Cp4.1LG03g01400 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCGTGAGAGAGTTATGAGAATAAGGCAAAAGCTCACATTTTTTCCGATACCCATTTCCAATTTCGCTCATCCAGAGGAATTATCATATTGGTAAGCCAAAAAGGAATCACATTTATTTCTCTGTTTCTTCTTTCTTCTTTCCACATTCTCATTTCGTTTTGTTTTTGCTTTAAAATCGCAAAAAAGATGAAGCAGAAATCAGTAATGTCGGCGCCGCCGTGGCTTGAGCCATTACTCACCACGCCCTTCTTCTCAATCTGCCACACCCACAGCCACGCGGCTAGGAGCGAGCGGAATATGTACTGCCTCGATTGCCACACTGACGCATTCTGCTTTTACTGCCGCTCATCGCATCACAAGGACCATCAAGTCATTCAGGTTGGTATCATAACTTTTGGGAAATTCTAAGACATGGGTATTGTTAAGCATTGTTTTTGAAGAAATGGGTTGGTTTTTGATTGTGGAAATTGGTTTTAGATTAGGAGATCTTCGTATCATGATGTGGTGAGAGTTGCAGAGATCGAAGATGCTTTGGATATCAGTGGTGTCCAAACGTATGTGATTAATAGCGCGAGAGTGATGTTCTTAAACGAGAGGCCTCAGCCAAAAGCCGGGAAAGGAGGAGCTCATATCTGTGAAATTTGTGGGAGAAGCTTATTGGATCCATTTCGTTTCTGTTCCCTCGGCTGTAAGGTCAGCATTACTCTGTTCTTCATTCAATTCTTCATAATTCATCATCTTTTGGTATAATTTCTATGGCGTTTATAGCTGGTAGGGGTGAAGAGGAATGGGGAAGATGCGAGCTTTAACGTGGAGGCGAAGAAAGAGGCAATGGGGATGGAAAGAAGAGAAGGAATTTCATCGAGGAGAAGGAAGGGTATTCCTCATAGGGCACCTTTTGGGGGTTGATTCAATGCTGCCTTTCCAAACCAATTCTTTCCATGATTTGGGGTATTTGTCCATACAAATATAGGGTATGTCCCTAAAAATCGAAATAAAATGATTAATTTTGAAAGGGTATTTGGATGTGAAGAGGCAATAATGGAGGGATTGTTATGTTCATAATTGCTAGGTGTATATTTGTTTATTGAGAAATTAAAAATAAATAAAGAATAGAACATGTCCTTGTGGAGTCCGTTTCATGGTTTTTCATGGGCCCATTATCCACATGGGCCGTTTATATAAATAAATACTTTCATTCT TCTCGTGAGAGAGTTATGAGAATAAGGCAAAAGCTCACATTTTTTCCGATACCCATTTCCAATTTCGCTCATCCAGAGGAATTATCATATTGATGAAGCAGAAATCAGTAATGTCGGCGCCGCCGTGGCTTGAGCCATTACTCACCACGCCCTTCTTCTCAATCTGCCACACCCACAGCCACGCGGCTAGGAGCGAGCGGAATATGTACTGCCTCGATTGCCACACTGACGCATTCTGCTTTTACTGCCGCTCATCGCATCACAAGGACCATCAAGTCATTCAGATTAGGAGATCTTCGTATCATGATGTGGTGAGAGTTGCAGAGATCGAAGATGCTTTGGATATCAGTGGTGTCCAAACGTATGTGATTAATAGCGCGAGAGTGATGTTCTTAAACGAGAGGCCTCAGCCAAAAGCCGGGAAAGGAGGAGCTCATATCTGTGAAATTTGTGGGAGAAGCTTATTGGATCCATTTCGTTTCTGTTCCCTCGGCTGTAAGCTGGTAGGGGTGAAGAGGAATGGGGAAGATGCGAGCTTTAACGTGGAGGCGAAGAAAGAGGCAATGGGGATGGAAAGAAGAGAAGGAATTTCATCGAGGAGAAGGAAGGGTATTCCTCATAGGGCACCTTTTGGGGGTTGATTCAATGCTGCCTTTCCAAACCAATTCTTTCCATGATTTGGGGTATTTGTCCATACAAATATAGGGTATGTCCCTAAAAATCGAAATAAAATGATTAATTTTGAAAGGGTATTTGGATGTGAAGAGGCAATAATGGAGGGATTGTTATGTTCATAATTGCTAGGTGTATATTTGTTTATTGAGAAATTAAAAATAAATAAAGAATAGAACATGTCCTTGTGGAGTCCGTTTCATGGTTTTTCATGGGCCCATTATCCACATGGGCCGTTTATATAAATAAATACTTTCATTCT ATGAAGCAGAAATCAGTAATGTCGGCGCCGCCGTGGCTTGAGCCATTACTCACCACGCCCTTCTTCTCAATCTGCCACACCCACAGCCACGCGGCTAGGAGCGAGCGGAATATGTACTGCCTCGATTGCCACACTGACGCATTCTGCTTTTACTGCCGCTCATCGCATCACAAGGACCATCAAGTCATTCAGATTAGGAGATCTTCGTATCATGATGTGGTGAGAGTTGCAGAGATCGAAGATGCTTTGGATATCAGTGGTGTCCAAACGTATGTGATTAATAGCGCGAGAGTGATGTTCTTAAACGAGAGGCCTCAGCCAAAAGCCGGGAAAGGAGGAGCTCATATCTGTGAAATTTGTGGGAGAAGCTTATTGGATCCATTTCGTTTCTGTTCCCTCGGCTGTAAGCTGGTAGGGGTGAAGAGGAATGGGGAAGATGCGAGCTTTAACGTGGAGGCGAAGAAAGAGGCAATGGGGATGGAAAGAAGAGAAGGAATTTCATCGAGGAGAAGGAAGGGTATTCCTCATAGGGCACCTTTTGGGGGTTGA MKQKSVMSAPPWLEPLLTTPFFSICHTHSHAARSERNMYCLDCHTDAFCFYCRSSHHKDHQVIQIRRSSYHDVVRVAEIEDALDISGVQTYVINSARVMFLNERPQPKAGKGGAHICEICGRSLLDPFRFCSLGCKLVGVKRNGEDASFNVEAKKEAMGMERREGISSRRRKGIPHRAPFGG Homology
BLAST of Cp4.1LG03g01400 vs. ExPASy Swiss-Prot
Match: Q1G3Q4 (Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=RITF1 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.5e-28 Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. NCBI nr
Match: XP_022935045.1 (uncharacterized protein At3g50808-like [Cucurbita moschata] >XP_023528012.1 uncharacterized protein At3g50808-like [Cucurbita pepo subsp. pepo] >XP_023528013.1 uncharacterized protein At3g50808-like [Cucurbita pepo subsp. pepo] >KAG7017400.1 hypothetical protein SDJN02_19265, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 375 bits (964), Expect = 1.88e-131 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. NCBI nr
Match: XP_022983115.1 (uncharacterized protein At3g50808-like [Cucurbita maxima] >XP_022983117.1 uncharacterized protein At3g50808-like [Cucurbita maxima]) HSP 1 Score: 369 bits (947), Expect = 7.34e-129 Identity = 178/182 (97.80%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. NCBI nr
Match: KAG6580644.1 (hypothetical protein SDJN03_20646, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 358 bits (919), Expect = 1.19e-124 Identity = 177/182 (97.25%), Postives = 177/182 (97.25%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. NCBI nr
Match: XP_038903535.1 (uncharacterized protein LOC120090101 isoform X2 [Benincasa hispida]) HSP 1 Score: 356 bits (913), Expect = 1.09e-123 Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. NCBI nr
Match: XP_038903534.1 (uncharacterized protein LOC120090101 isoform X1 [Benincasa hispida]) HSP 1 Score: 356 bits (913), Expect = 1.12e-123 Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. ExPASy TrEMBL
Match: A0A6J1F9G7 (uncharacterized protein At3g50808-like OS=Cucurbita moschata OX=3662 GN=LOC111442031 PE=4 SV=1) HSP 1 Score: 375 bits (964), Expect = 9.08e-132 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. ExPASy TrEMBL
Match: A0A6J1IYD5 (uncharacterized protein At3g50808-like OS=Cucurbita maxima OX=3661 GN=LOC111481760 PE=4 SV=1) HSP 1 Score: 369 bits (947), Expect = 3.56e-129 Identity = 178/182 (97.80%), Postives = 181/182 (99.45%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. ExPASy TrEMBL
Match: A0A1S3B782 (uncharacterized protein LOC103486541 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486541 PE=4 SV=1) HSP 1 Score: 352 bits (903), Expect = 1.70e-122 Identity = 172/179 (96.09%), Postives = 175/179 (97.77%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. ExPASy TrEMBL
Match: A0A1S3B5Z6 (uncharacterized protein LOC103486541 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486541 PE=4 SV=1) HSP 1 Score: 350 bits (898), Expect = 9.49e-122 Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. ExPASy TrEMBL
Match: A0A0A0LDT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G746610 PE=4 SV=1) HSP 1 Score: 349 bits (895), Expect = 2.72e-121 Identity = 170/178 (95.51%), Postives = 174/178 (97.75%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. TAIR 10
Match: AT2G27930.1 (PLATZ transcription factor family protein ) HSP 1 Score: 218.0 bits (554), Expect = 6.2e-57 Identity = 112/190 (58.95%), Postives = 131/190 (68.95%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. TAIR 10
Match: AT1G32700.1 (PLATZ transcription factor family protein ) HSP 1 Score: 189.1 bits (479), Expect = 3.1e-48 Identity = 99/198 (50.00%), Postives = 128/198 (64.65%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. TAIR 10
Match: AT4G17900.1 (PLATZ transcription factor family protein ) HSP 1 Score: 185.3 bits (469), Expect = 4.5e-47 Identity = 97/195 (49.74%), Postives = 121/195 (62.05%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. TAIR 10
Match: AT1G76590.1 (PLATZ transcription factor family protein ) HSP 1 Score: 182.2 bits (461), Expect = 3.8e-46 Identity = 84/137 (61.31%), Postives = 109/137 (79.56%), Query Frame = 0
BLAST of Cp4.1LG03g01400 vs. TAIR 10
Match: AT1G21000.1 (PLATZ transcription factor family protein ) HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45 Identity = 83/147 (56.46%), Postives = 111/147 (75.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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