Cp4.1LG02g11320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g11320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	sister chromatid cohesion protein SCC4
Location	Cp4.1LG02: 10154885 .. 10155789 (+)
RNA-Seq Expression	Cp4.1LG02g11320
Synteny	Cp4.1LG02g11320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTTTTTTCTCCCTTCTTCCACAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTCGTTGCACAATATTTGACGATTCTCGGGAGCTTGGCACTTGCTCTACATGACACTGTGCAAGCCAGAGAGATATTGAGATCATCTTTAACATTGGCAAAGAAGCTCTATGACATCCCAACGCAGATCTGGGTGCTATCAGTTCTAACAAGTATGCATATCATAATTCTTCCTAGTTACTATAAACATTTTGGTAGATTTTCACAAGGCACCTAGACTGAAGAACACATGCTGCGAGCAACTGTCTCAGGACATTTTTTCTTGCATATTTGGATAAAGGTTACAAGCGTAAACGTGGGAAGAAGGGAGCGAGTGTGTGAAGGGTTATTATAGGGGTGATGTTTGTGAGAGGAGCATATCATTTTTCTGCACGAACATTCTATTACATTAGTACACATACAAATTTACCTTTTTTTCTTCATATATTTATAGCTTTATACCAAGAATTGGGTGAAAAGGGAAATGAGATGGAGAACGCAGAATATCAATCTAAAAAGGCAGATGATCTGCAAAAGAGACTCGTCGATGCTCATTCATCCATTCATCACATCGATTTAGTAAGCCATTCATGTTGATCTAATCTTTCTTTCTGTTCTTTTTAAGAGAATGTTGTTCTAATCGTTTGATGAATACAGATCGAAAAAGTACGGCGTGAAATTCAGCAACTTAAGGAGGTCGATATGAAGCGTGCAATAGGTGGCCCGTCGCTTGGGGTTAATCTTGATATCCCAGAATCCATTGGGGTATCAGTTTCATTGCCTACTTCGTCGTTGAAGCTTATGGATATGGACACAGGGAGACGTGGGAAGAGGAAACTTTAG

mRNA sequence

ATGGTGTTTTTTTCTCCCTTCTTCCACAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTCGTTGCACAATATTTGACGATTCTCGGGAGCTTGGCACTTGCTCTACATGACACTGTGCAAGCCAGAGAGATATTGAGATCATCTTTAACATTGGCAAAGAAGCTCTATGACATCCCAACGCAGATCTGGGTGCTATCAGTTCTAACAACTTTATACCAAGAATTGGGTGAAAAGGGAAATGAGATGGAGAACGCAGAATATCAATCTAAAAAGGCAGATGATCTGCAAAAGAGACTCGTCGATGCTCATTCATCCATTCATCACATCGATTTAATCGAAAAAGTACGGCGTGAAATTCAGCAACTTAAGGAGGTCGATATGAAGCGTGCAATAGGTGGCCCGTCGCTTGGGGTTAATCTTGATATCCCAGAATCCATTGGGGTATCAGTTTCATTGCCTACTTCGTCGTTGAAGCTTATGGATATGGACACAGGGAGACGTGGGAAGAGGAAACTTTAG

Coding sequence (CDS)

ATGGTGTTTTTTTCTCCCTTCTTCCACAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTCGTTGCACAATATTTGACGATTCTCGGGAGCTTGGCACTTGCTCTACATGACACTGTGCAAGCCAGAGAGATATTGAGATCATCTTTAACATTGGCAAAGAAGCTCTATGACATCCCAACGCAGATCTGGGTGCTATCAGTTCTAACAACTTTATACCAAGAATTGGGTGAAAAGGGAAATGAGATGGAGAACGCAGAATATCAATCTAAAAAGGCAGATGATCTGCAAAAGAGACTCGTCGATGCTCATTCATCCATTCATCACATCGATTTAATCGAAAAAGTACGGCGTGAAATTCAGCAACTTAAGGAGGTCGATATGAAGCGTGCAATAGGTGGCCCGTCGCTTGGGGTTAATCTTGATATCCCAGAATCCATTGGGGTATCAGTTTCATTGCCTACTTCGTCGTTGAAGCTTATGGATATGGACACAGGGAGACGTGGGAAGAGGAAACTTTAG

Protein sequence

MVFFSPFFHRNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL

Homology

[Close]

BLAST of Cp4.1LG02g11320 vs. ExPASy Swiss-Prot
Match: Q9FGN7 (Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.1e-54
Identity = 112/176 (63.64%), Postives = 141/176 (80.11%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQ+ HNH+GNLQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 551 RNRLAKGLQIAHNHMGNLQLVAQYLTLLGNLALSLHDTVQAREILRSSLTLAKKLYDIPT 610

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           Q+WVLS+ T LYQ+LGEKGNEMEN E++ KK D+LQ RL +A  SIHHI+L+ K R E+ 
Sbjct: 611 QLWVLSIFTALYQQLGEKGNEMENEEFRKKKWDELQSRLAEARGSIHHIELVAKARIELY 670

Query: 130 QLKEVDMKRAI--GGPSLGVNLDIPESIGVSVSLPT-SSLKLMDMDTGRR-GKRKL 182
           Q+     ++++     S+  NLDIPES+G+    P  SS +L+ +DTG+R GKR++
Sbjct: 671 QIDNNPQEQSLVASAQSMQGNLDIPESVGIEGPSPAPSSSRLVGLDTGKRWGKRRM 726

[Close]

BLAST of Cp4.1LG02g11320 vs. NCBI nr
Match: XP_023524546.1 (sister chromatid cohesion protein SCC4-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325 bits (834), Expect = 3.53e-105
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 492 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 551

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 552 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 611

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 612 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 663

[Close]

BLAST of Cp4.1LG02g11320 vs. NCBI nr
Match: XP_023521217.1 (sister chromatid cohesion protein SCC4 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023521218.1 sister chromatid cohesion protein SCC4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325 bits (834), Expect = 1.47e-104
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 670 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. NCBI nr
Match: KAG6607383.1 (Sister chromatid cohesion protein SCC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325 bits (834), Expect = 1.47e-104
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 670 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. NCBI nr
Match: KAG7037052.1 (hypothetical protein SDJN02_00673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 325 bits (834), Expect = 1.47e-104
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 670 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. NCBI nr
Match: XP_022949168.1 (sister chromatid cohesion protein SCC4 [Cucurbita moschata])

HSP 1 Score: 325 bits (834), Expect = 1.47e-104
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 670 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. ExPASy TrEMBL
Match: A0A6J1GBA4 (sister chromatid cohesion protein SCC4 OS=Cucurbita moschata OX=3662 GN=LOC111452599 PE=3 SV=1)

HSP 1 Score: 325 bits (834), Expect = 7.14e-105
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 670 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. ExPASy TrEMBL
Match: A0A6J1KHQ8 (sister chromatid cohesion protein SCC4 OS=Cucurbita maxima OX=3661 GN=LOC111493351 PE=3 SV=1)

HSP 1 Score: 324 bits (830), Expect = 2.82e-104
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKK DDLQKRLVDAHSSIHHIDLIEKVRREIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKTDDLQKRLVDAHSSIHHIDLIEKVRREIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL
Sbjct: 670 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. ExPASy TrEMBL
Match: A0A6J1DVU1 (sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC111024925 PE=3 SV=1)

HSP 1 Score: 313 bits (803), Expect = 2.97e-100
Identity = 164/172 (95.35%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 550 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 609

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL DAHSSIHHI+LI+KVR EIQ
Sbjct: 610 QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLADAHSSIHHIELIDKVRLEIQ 669

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Sbjct: 670 QLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL 721

[Close]

BLAST of Cp4.1LG02g11320 vs. ExPASy TrEMBL
Match: A0A0A0L1H4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000020 PE=3 SV=1)

HSP 1 Score: 281 bits (718), Expect = 2.66e-94
Identity = 154/171 (90.06%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 11  NRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQ 70
           NRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQ
Sbjct: 14  NRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQ 73

Query: 71  IWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQ 130
           IWVLSVLTTLYQELGEKGNEMENAEYQ KKADDLQ+RLVDAHSSIHHI+LI+KVR EIQQ
Sbjct: 74  IWVLSVLTTLYQELGEKGNEMENAEYQCKKADDLQRRLVDAHSSIHHIELIDKVRLEIQQ 133

Query: 131 LKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           LK VD+KRA G  SLGV+LDIP SIGVSVS  TSSLKLMD+D+GRRGKRK+
Sbjct: 134 LKGVDIKRA-GSISLGVDLDIPGSIGVSVS--TSSLKLMDIDSGRRGKRKI 181

[Close]

BLAST of Cp4.1LG02g11320 vs. ExPASy TrEMBL
Match: A0A5D3CHS2 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00010 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 6.50e-88
Identity = 154/172 (89.53%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 539 RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 598

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           QIWVLSVLTTLYQELGEKGNEMENAEYQ KKADDLQ+RLVDAHSSIHHI+LI+KVR EIQ
Sbjct: 599 QIWVLSVLTTLYQELGEKGNEMENAEYQCKKADDLQRRLVDAHSSIHHIELIDKVRLEIQ 658

Query: 130 QLKEVDMKRAIGGPSLGVNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 181
           QLK VD+KRA G  SLGV+LDIP SIG SVS  TSSLKLMD+D+GRRGKRK+
Sbjct: 659 QLKGVDIKRA-GSISLGVDLDIPGSIGASVS--TSSLKLMDIDSGRRGKRKI 707

[Close]

BLAST of Cp4.1LG02g11320 vs. TAIR 10
Match: AT5G51340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-55
Identity = 112/176 (63.64%), Postives = 141/176 (80.11%), Query Frame = 0


Query: 10  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPT 69
           RNRLAKGLQ+ HNH+GNLQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYDIPT
Sbjct: 551 RNRLAKGLQIAHNHMGNLQLVAQYLTLLGNLALSLHDTVQAREILRSSLTLAKKLYDIPT 610

Query: 70  QIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQ 129
           Q+WVLS+ T LYQ+LGEKGNEMEN E++ KK D+LQ RL +A  SIHHI+L+ K R E+ 
Sbjct: 611 QLWVLSIFTALYQQLGEKGNEMENEEFRKKKWDELQSRLAEARGSIHHIELVAKARIELY 670

Query: 130 QLKEVDMKRAI--GGPSLGVNLDIPESIGVSVSLPT-SSLKLMDMDTGRR-GKRKL 182
           Q+     ++++     S+  NLDIPES+G+    P  SS +L+ +DTG+R GKR++
Sbjct: 671 QIDNNPQEQSLVASAQSMQGNLDIPESVGIEGPSPAPSSSRLVGLDTGKRWGKRRM 726

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g11320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGN7	2.1e-54	63.64	Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 P...	[more]

BLAST of Cp4.1LG02g11320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524546.1	3.53e-105	100.00	sister chromatid cohesion protein SCC4-like, partial [Cucurbita pepo subsp. pepo...	[more]
XP_023521217.1	1.47e-104	100.00	sister chromatid cohesion protein SCC4 isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]
KAG6607383.1	1.47e-104	100.00	Sister chromatid cohesion protein SCC4, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG7037052.1	1.47e-104	100.00	hypothetical protein SDJN02_00673, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022949168.1	1.47e-104	100.00	sister chromatid cohesion protein SCC4 [Cucurbita moschata]	[more]

BLAST of Cp4.1LG02g11320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBA4	7.14e-105	100.00	sister chromatid cohesion protein SCC4 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KHQ8	2.82e-104	99.42	sister chromatid cohesion protein SCC4 OS=Cucurbita maxima OX=3661 GN=LOC1114933...	[more]
A0A6J1DVU1	2.97e-100	95.35	sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0L1H4	2.66e-94	90.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000020 PE=3 SV=1	[more]
A0A5D3CHS2	6.50e-88	89.53	MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Cp4.1LG02g11320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51340.1	1.5e-55	63.64	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 10..139 e-value: 3.1E-6 score: 28.0
IPR019440	Chromatid cohesion factor MAU2	PANTHER	PTHR21394	UNCHARACTERIZED	coord: 10..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g11320.1	Cp4.1LG02g11320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
molecular_function	GO:0005515	protein binding