Cp4.1LG02g10320 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g10320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentose-5-phosphate 3-epimerase
Location	Cp4.1LG02: 9672939 .. 9677910 (-)
RNA-Seq Expression	Cp4.1LG02g10320
Synteny	Cp4.1LG02g10320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTAGAAAGAAGTCAAAATCTAAATTTGATTGTGAAAGGAAGACATTTGAATTTCTCTCGTTCATGTCAGCAAGATCGAAGGCCAACCATTGCCGATAAGCAATCCCTGAATTCTGGTGGTACGCCCCCCATCCTCAACCACTCATATTTCTTTCCCAATTTTCTTGTTTGGATTTGGCGGTCTTACTCTTACATGAGCGTGTTAAGTGAAGAACAACGAATCATCATTCTTCGCCTCCTTACCTAACCTTTCAAACCCAGAAATGGCTGTTGCTTCCCTATGCCAATCCACTATGAATTCCCAGGTCAGTGGGTTGATCGGAGGTCTCACTTTTCAGAAACTAGCCCTCTCTCAACCGACCTCTCTTACCTTTTCGAGGTAATTTGATTAATGGGTGCCCTTCGTTTTCTTCGTTTGATCGCTCTAAGATCCATTGGAGGCCTTGGAATTCAATCTCTCAATCTTTGACTGCGAATGAACTAACGATTGTGTTCTTACATTGCCCTGATTTTGAGAATACCTAATTTAATTTAGTTTAGTTTTCTGATTCTTGGCATGTGGTGATAATTCAGTTCTGTCTCATTGAAATTCTGAGATTGAACTGCTGAGCTTCTTGCAATTGTTCTTGTTTATTTGATTTGTGTGTTTTGCAAGAGCTTGCTTTCGTTTATGTTCTAAGTTCCTTCGATCCGTGGTGTAATAGAGTAGAATTAATGACACCCATTGCGGTATATGAAGAAATATTTGGTATACAATGTTCTCTTGTTTACTGTCTGTTGCTAACTTTCTAGGAGAAGCTACAAAAATGTGGTGAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGAAATCATTGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTTCTGTTCTGTGCTCTGATATTTCCATCATTTTTCTTTGTTATCAAATTGCTTTGGAGCTTTATACCAATGATTTTATAGATTGAAATTCTCGTCTTGTTTAGGTCAAAGCTGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGTTTTGTTCCAAATATCACGATTGGACCTCTTGTTGTCGATGCTCTACGCCCCGTGACAGATCTTCCTTTAGATGTGCATTTGGTATGCTTCTTTCTCATTTTTATTCTCTTTTGTTGTTGCACTGATTCTTGAGTACTTCTGTTAACATAAACTCGATGCATTGTAGATGATTGTGGAGCCAGAACAGCGTGTGCCAGACTTTATAAAAGCTGGTGCTGATATCGTTAGTGTTCATTGCGAGCAATCTTCTACAATCCATCTGCATCGCACCCTTAATCAAGTAAGTTTTCCTCCTCTGCGATGTAGTACGGAATTAGGTGCACGTGTGCGGTCCTAGCAAGATATAGATCTAAATGAAGAAAAAACTGCAAAATCTAAGACGTTTTTTAGAATACAATGGAAGTGGATATGTTCCTACATTGCTCAAGTAAGGTTCCCTTTGTGACGCAATTTGGGCTTAGGTTCACGTTTCTTTTCTTTGTTAAATCCTAATAAGATATAGATCGAAATGAAGATAAAACTATAAAATTCAACATGCTCTTAAGAATAAAACAAAGGCGTGGGTTCTTACTGTTCTTATTGTTCTGAAACTTTATGGATTAAAAATGTGAGATCTCACATCGGTTGAAGAGGAGAACGAAGCATTGCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGGCTTAGACTGTTACCAATGGTATTAGAGCCAGACACCGAGCAGTGTGCCAACGAGGACACTGGGCCCCCAAGGGGGTGGATTGTGAGATCCCACCTCGGTTGGAGAGAGGAACAAAGTATTGCTTATAAGGGTGTGAAAACCTCACCCTAACAAACGCGTTTTAAAAACCTTGAGAGAAAGCCCGAAGAAGACAATATCCACTACCGGTGAGCTAAGGCTTAGGCTGTTAAAGATAAAGATAATCATATTGTTGAAAACTGCTTTTACAGGAGTTTATGGCTGTTTTCTTGGTTCCGTTGTGCTTCATTCTTGAAGCATTACTTGCTTGACTTGCAAATGAAAATGACTTTAGTTTTAGACGGAATTCATGCATTTTATGGAAAGATCATATATCTTTATTCATAGGCCATTCCTTTAAATATGATTCAGATAAAAAGTCTTGGAGCTAAAGCTGGAGTGGTTCTAAATCCTGCTACTTCACTCAGCACAATAGAATATGTTCTTGATGGTGAGTGTTGTTGTAACGTGGAGTCTGAAGCTCATTTATAGCTTATTAAATTGTTATATAAAACTATATATCGAAAATAGTCTGAGCGTAGATAGTTATATATGGTAAAACTATGTATATAGTAAACTGGATCATATACATATATATATTTATGCGTTGCAGTGTTTCAAAAATATACTTTCTATTCTATCGTACATACTTGAAGTCATCAATATCGTTTAGCCAATATTTCTATTTGCTCTCTCTAGCGTTCTTTGTATATCAGCCTTTAGTCAATGTTCCTTTTTACTCTCTCCGGTTCTTTGTATTCACTTAGATTGAGTAATGTGCAAAATGACCAAGAAAAGTGATGGATTGATCGGATTAGAGAATAAGACCTGATATTTTGGAGCCATGCGGAGGTTAAGAGTGAATATTTCTAGGATGCCACTTCGTAGAATAACGCGTTAATTATGTGAACAAAACGAAAGGGATTGACAATGCCCTTTGCCTGTTTTCAGTGGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGAATTAAGAAGATTATGTGCTGAAAAGGTACAATTTTCCTTTCCTTTCTGTAGCTTATTCCATGAGTTTTAGAAGATTACAAGGAATCAAAAGCCATTGGCATTTCATTTACTTCGTCGCAGGGAGTTAACCCATGGATCGAAGTGGACGGTGGCGTCGGTCCAGCCAATGCATATAAGGTGCATACAATAACATTCCCACCATAACAACTCATACTACATAAGTTTCTAAACCAAGTTTTTGGATGGTCTTGCAGGTCATAGAGGCTGGAGCTAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCAGAGGGTATGTATGATCCAAACAGTTCCCTTACTCCCTCTTCTCACAAATCCTTAGAACATTTTAACTAAATTCTGCCCTCGAATCGATTCTCGAACAGCCATAAAAGGAATCAAAACGAGCAAAAGGCCCGAGGCAGTTCCAGTGTGAAAGTGACTTGTACAAGATCTGAGCTGTTTCAATTAATAGTATTGCTGTGTTCTTCATTGCCACGTAAGTTGTCCCTCGTCGTCGTTTCGGTTGATCGAAAACGAATATGATTCTGTATGATCCACGACATCTGCTGCTGTCACGGTGCTACCTGATCTTACCACTTGTTTCTTCTTGTAAATGCAGAGATAAATCTCCAACTGCATAGATAGCAGAACGTTGTGTTCTTCAAGCTCGTCTCAGCTATGGTTGCCAGCTTCACAGTTTTATTCCCGTGTGAAAAGAAGCCTGTAGATTTGTTATGTACTATAGCATCTCAGTATAAATTCAATAATATAAACAAATGACTTGACTTGGATTCAAGTGAATAAAAATTTTATGAATCGGGTTATTATTGGTTCCTAAAATTAAATTGGATTAAACCGAAAAAATTTAAATTTATGTTAATTTAAAAACATATAATATAATTATATATACATGTAATTATTCATTCTTTAACCACGTTTAAAAATAATTTTTAATTATTTTCAAGGTAATTTTTAAAAACATATATTAAAATTGAGTTAAAAATCTTAATTAAATATTTAAAAATAAATAAATGGATATTTTACAAACTAATATTTTTTTTTTAATTTTTATTGATAACAAAAATTTGAAAATCGCTCAATTTATTTCTTACGTTCATAATTGAACTACAAAATTCTCAATTTTATCATTTATTGAAGTGTCAATTGCAAGAAATCTTTCATTCCAGAAGATTTTGACGCTGGTGTCCTAGTCGCATTGTGTCGAATCTGGAAGATAAATGCAAGTTAACGAAACCGCCATTTCCGCCATTGGCAGAAGCTCCAGAGCCAGGCAACAATTTCTCTTCTCTCTATTGAAGTGCTGTAAATCCGTTCGTAATCTTACGAAAATTCATGCCCAGATAGTCACCAGCGGCTTGACCCAGAAAAATTTCATCCTCGTCAATCTTTTATCGCTCTATGTCTCTTTCGGCTCTCTTAGAACTGCCCAGAAAGTATTCGAGGACGTTAGTTCGCCGAGTACGACTGTGTGGAACCAGATAATCAGAGGCCATGCGCGGAGCAAAACGCCTCAAGAATCAATTGAGCTGTTTAAGCGAATGGCGGCGGCGGAAGTTGAGGCTGATGAGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGCGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTGGCAAATGGGTATCACTCCAACACGTATGTTAGATCGAATTTGATCAATTTGTACGCAGATGTAGCGGGGGGTTTTGATCTCGAGAGAGCTCGTTACATGTTTGATGAAATGCTTGAAAGAAATGTCGTGGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTCGATGAGATGCCTGAGAGAAATGTCCGGACATGGACTACCATGGTAGCAGGGCTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCAATATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAGGTGGCATTGGTGGCTGCTTTGACA

mRNA sequence

ATGGTGAAGAACAACGAATCATCATTCTTCGCCTCCTTACCTAACCTTTCAAACCCAGAAATGGCTGTTGCTTCCCTATGCCAATCCACTATGAATTCCCAGGTCAGTGGGTTGATCGGAGGTCTCACTTTTCAGAAACTAGCCCTCTCTCAACCGACCTCTCTTACCTTTTCGAGGAGAAGCTACAAAAATGTGGTGAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGAAATCATTGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCTGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGTTTTGTTCCAAATATCACGATTGGACCTCTTGTTGTCGATGCTCTACGCCCCGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCAGAACAGCGTGTGCCAGACTTTATAAAAGCTGGTGCTGATATCGTTAGTGTTCATTGCGAGCAATCTTCTACAATCCATCTGCATCGCACCCTTAATCAAATAAAAATGGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGAATTAAGAAGATTATGTGCTGAAAAGGGAGTTAACCCATGGATCGAAGTGGACGGTGGCGTCGGTCCAGCCAATGCATATAAGGTCATAGAGGCTGGAGCTAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCAGAGGTTAACGAAACCGCCATTTCCGCCATTGGCAGAAGCTCCAGAGCCAGGCAACAATTTCTCTTCTCTCTATTGAAGTGCTGTAAATCCGTTCGTAATCTTACGAAAATTCATGCCCAGATAGTCACCAGCGGCTTGACCCAGAAAAATTTCATCCTCGTCAATCTTTTATCGCTCTATGTCTCTTTCGGCTCTCTTAGAACTGCCCAGAAAGTATTCGAGGACGTTAGTTCGCCGAGTACGACTGTGTGGAACCAGATAATCAGAGGCCATGCGCGGAGCAAAACGCCTCAAGAATCAATTGAGCTGTTTAAGCGAATGGCGGCGGCGGAAGTTGAGGCTGATGAGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGCGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTGGCAAATGGGTATCACTCCAACACGTATGTTAGATCGAATTTGATCAATTTGTACGCAGATGTAGCGGGGGGTTTTGATCTCGAGAGAGCTCGTTACATGTTTGATGAAATGCTTGAAAGAAATGTCGTGGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTCGATGAGATGCCTGAGAGAAATGTCCGGACATGGACTACCATGGTAGCAGGGCTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCAATATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAGGTGGCATTGGTGGCTGCTTTGACA

Coding sequence (CDS)

ATGGTGAAGAACAACGAATCATCATTCTTCGCCTCCTTACCTAACCTTTCAAACCCAGAAATGGCTGTTGCTTCCCTATGCCAATCCACTATGAATTCCCAGGTCAGTGGGTTGATCGGAGGTCTCACTTTTCAGAAACTAGCCCTCTCTCAACCGACCTCTCTTACCTTTTCGAGGAGAAGCTACAAAAATGTGGTGAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGAAATCATTGTCTCTCCCTCAATCCTCTCTGCTAACTTTGCCAAATTGGGAGAGCAGGTCAAAGCTGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGTTTTGTTCCAAATATCACGATTGGACCTCTTGTTGTCGATGCTCTACGCCCCGTGACAGATCTTCCTTTAGATGTGCATTTGATGATTGTGGAGCCAGAACAGCGTGTGCCAGACTTTATAAAAGCTGGTGCTGATATCGTTAGTGTTCATTGCGAGCAATCTTCTACAATCCATCTGCATCGCACCCTTAATCAAATAAAAATGGTTGATTTGGTCTTAATTATGTCGGTAAATCCTGGTTTTGGTGGGCAAAGCTTTATTGAGAGCCAAGTAAAGAAAATCTCAGAATTAAGAAGATTATGTGCTGAAAAGGGAGTTAACCCATGGATCGAAGTGGACGGTGGCGTCGGTCCAGCCAATGCATATAAGGTCATAGAGGCTGGAGCTAATGCTTTAGTTGCAGGTTCTGCTGTTTTTGGAGCTAAAGATTATGCAGAGGTTAACGAAACCGCCATTTCCGCCATTGGCAGAAGCTCCAGAGCCAGGCAACAATTTCTCTTCTCTCTATTGAAGTGCTGTAAATCCGTTCGTAATCTTACGAAAATTCATGCCCAGATAGTCACCAGCGGCTTGACCCAGAAAAATTTCATCCTCGTCAATCTTTTATCGCTCTATGTCTCTTTCGGCTCTCTTAGAACTGCCCAGAAAGTATTCGAGGACGTTAGTTCGCCGAGTACGACTGTGTGGAACCAGATAATCAGAGGCCATGCGCGGAGCAAAACGCCTCAAGAATCAATTGAGCTGTTTAAGCGAATGGCGGCGGCGGAAGTTGAGGCTGATGAGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGCGAGATCGAGGTTATTCAGAGAGGGGGAACAGATTCATGGGAGAGTTTTGGCAAATGGGTATCACTCCAACACGTATGTTAGATCGAATTTGATCAATTTGTACGCAGATGTAGCGGGGGGTTTTGATCTCGAGAGAGCTCGTTACATGTTTGATGAAATGCTTGAAAGAAATGTCGTGGGTTGGAATTCCTTGCTCGCAGGGTATGTTAGACGTGGTGATTTTGATGGGGCTAGAAAAGTTTTCGATGAGATGCCTGAGAGAAATGTCCGGACATGGACTACCATGGTAGCAGGGCTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCAATATTTAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAGGTGGCATTGGTGGCTGCTTTGACA

Protein sequence

MVKNNESSFFASLPNLSNPEMAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKMVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLYVSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYSFLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEMLERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFNQMRRAGVELDQVALVAALT

Homology

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BLAST of Cp4.1LG02g10320 vs. ExPASy Swiss-Prot
Match: Q43157 (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPE PE=1 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 3.6e-110
Identity = 214/283 (75.62%), Postives = 233/283 (82.33%), Query Frame = 0


Query: 21  MAVASLCQSTMNSQVSGLIGGLTFQKL--ALSQPTSLTFSRRSYKNVVKASARVDKYSKS 80
           M+ ASLCQST+ SQ++G  GGL  +KL  + S P SLTF+RR  + +VKA++RVDK+SKS
Sbjct: 1   MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60

Query: 81  EIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 140
           +IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61  DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120

Query: 141 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK-------------- 200
           PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK              
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180

Query: 201 ----------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVG 260
                     +VDLVLIMSVNPGFGGQSFIESQVKKIS+LR++C EKGVNPWIEVDGGV 
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVT 240

Query: 261 PANAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 278
           PANAYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 241 PANAYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKASKR 279

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BLAST of Cp4.1LG02g10320 vs. ExPASy Swiss-Prot
Match: Q9SAU2 (Ribulose-5-phosphate-3-epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPE PE=2 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 6.9e-106
Identity = 212/280 (75.71%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 22  AVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEII 81
           + ASLC S  ++QV+G   GL  ++  L QPTS +FSRR    +VKAS+RVD++SKS+II
Sbjct: 4   SAASLCCS--STQVNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDII 63

Query: 82  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 141
           VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 64  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 123

Query: 142 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK----------------- 201
           VHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT+NQIK                 
Sbjct: 124 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 183

Query: 202 -------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPAN 261
                  MVDLVLIMSVNPGFGGQSFIESQVKKIS+LR++CAEKGVNPWIEVDGGV PAN
Sbjct: 184 AIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPAN 243

Query: 262 AYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 278
           AYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 244 AYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKASKR 275

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy Swiss-Prot
Match: Q43843 (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 1.3e-104
Identity = 204/278 (73.38%), Postives = 224/278 (80.58%), Query Frame = 0


Query: 25  SLCQST-MNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEIIVS 84
           SL  ST + SQ+SG  G    QK++ S P SLTF+RR  + VV AS+RVDK+SKS+IIVS
Sbjct: 1   SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVS 60

Query: 85  PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 144
           PSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVH
Sbjct: 61  PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVH 120

Query: 145 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK------------------- 204
           LMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK                   
Sbjct: 121 LMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 180

Query: 205 -----MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPANAY 264
                 VDLVLIMSVNPGFGGQSFIESQVKKIS+LR++CAE+G+NPWIEVDGGVGP NAY
Sbjct: 181 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAY 240

Query: 265 KVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 278
           KVIEAGANALVAGSAVFGA DYAE    AI  I  S R
Sbjct: 241 KVIEAGANALVAGSAVFGAPDYAE----AIKGIKTSKR 274

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy Swiss-Prot
Match: Q9ZTP5 (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPE PE=1 SV=2)

HSP 1 Score: 361.3 bits (926), Expect = 1.8e-98
Identity = 197/264 (74.62%), Postives = 217/264 (82.20%), Query Frame = 0


Query: 24  ASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEIIVS 83
           +SLC ST  S  +  +G    ++LA S P      R++++  V+AS+RVDK+SK++IIVS
Sbjct: 8   SSLC-STFASPRAASLG----RRLAFSSP------RKAFR--VRASSRVDKFSKNDIIVS 67

Query: 84  PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 143
           PSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH
Sbjct: 68  PSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 127

Query: 144 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK------------------- 203
           LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK                   
Sbjct: 128 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAI 187

Query: 204 -----MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPANAY 263
                +VDLVLIMSVNPGFGGQSFIESQVKKI+ELRRLCAEKGVNPWIEVDGGVGP NAY
Sbjct: 188 DYVLDVVDLVLIMSVNPGFGGQSFIESQVKKIAELRRLCAEKGVNPWIEVDGGVGPKNAY 247

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy Swiss-Prot
Match: P74061 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpe PE=1 SV=3)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-66
Identity = 133/226 (58.85%), Postives = 166/226 (73.45%), Query Frame = 0


Query: 80  IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 139
           I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   
Sbjct: 5   IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKT 64

Query: 140 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK--------------- 199
           LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI+               
Sbjct: 65  LDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTP 124

Query: 200 ---------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGP 259
                    + DL+LIMSVNPGFGGQSFI   + KI  LR++C E+G++PWIEVDGG+ P
Sbjct: 125 LDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP 184

Query: 260 ANAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSRARQQ 282
            N ++V+EAGANA+VAGSAVF A +YAE    AI+ +  S R   Q
Sbjct: 185 NNTWQVLEAGANAIVAGSAVFNAPNYAE----AIAGVRNSKRPEPQ 226

[Close]

BLAST of Cp4.1LG02g10320 vs. NCBI nr
Match: XP_023525439.1 (pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 506 bits (1302), Expect = 1.54e-171
Identity = 258/259 (99.61%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 263 EVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 322
           +VNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY
Sbjct: 2   QVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 61

Query: 323 VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 382
           VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS
Sbjct: 62  VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 121

Query: 383 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 442
           FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM
Sbjct: 122 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 181

Query: 443 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 502
           LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN
Sbjct: 182 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 241

Query: 503 QMRRAGVELDQVALVAALT 521
           QMRRAGVELDQVALVAALT
Sbjct: 242 QMRRAGVELDQVALVAALT 260

[Close]

BLAST of Cp4.1LG02g10320 vs. NCBI nr
Match: KAG6607462.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037118.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 503 bits (1294), Expect = 2.50e-170
Identity = 256/259 (98.84%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 263 EVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 322
           +VNETAISAIGRSSRARQQFLFS+LKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY
Sbjct: 2   QVNETAISAIGRSSRARQQFLFSVLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 61

Query: 323 VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 382
           VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS
Sbjct: 62  VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 121

Query: 383 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 442
           FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYA+VAGGFDLERARYMFDEM
Sbjct: 122 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYANVAGGFDLERARYMFDEM 181

Query: 443 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 502
           LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN
Sbjct: 182 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 241

Query: 503 QMRRAGVELDQVALVAALT 521
           QMRRAGVELDQVALVAALT
Sbjct: 242 QMRRAGVELDQVALVAALT 260

[Close]

BLAST of Cp4.1LG02g10320 vs. NCBI nr
Match: XP_022948853.1 (pentatricopeptide repeat-containing protein At5g66520-like isoform X1 [Cucurbita moschata] >XP_022948854.1 pentatricopeptide repeat-containing protein At5g66520-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 501 bits (1290), Expect = 1.01e-169
Identity = 255/259 (98.46%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 263 EVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 322
           +VNETAISAIGRSSRARQQFLFS+LKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY
Sbjct: 2   QVNETAISAIGRSSRARQQFLFSVLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 61

Query: 323 VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 382
           VSFGSLRTAQKVFEDVSSP TTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS
Sbjct: 62  VSFGSLRTAQKVFEDVSSPGTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 121

Query: 383 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 442
           FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYA+VAGGFDLERARYMFDEM
Sbjct: 122 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYANVAGGFDLERARYMFDEM 181

Query: 443 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 502
           LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN
Sbjct: 182 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 241

Query: 503 QMRRAGVELDQVALVAALT 521
           QMRRAGVELDQVALVAALT
Sbjct: 242 QMRRAGVELDQVALVAALT 260

[Close]

BLAST of Cp4.1LG02g10320 vs. NCBI nr
Match: XP_022997984.1 (pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima])

HSP 1 Score: 489 bits (1260), Expect = 3.45e-165
Identity = 248/259 (95.75%), Postives = 256/259 (98.84%), Query Frame = 0


Query: 263 EVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 322
           +VNETAISA+GR+SRARQQFLFS+LKCCKSVRNLT+IHAQIVTSGLTQKNFILVNLLSLY
Sbjct: 2   QVNETAISAVGRNSRARQQFLFSVLKCCKSVRNLTEIHAQIVTSGLTQKNFILVNLLSLY 61

Query: 323 VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 382
           VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRM AAEVEADEFTYS
Sbjct: 62  VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMTAAEVEADEFTYS 121

Query: 383 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 442
           FLLSACARSRLFREGEQIHGRVLANG HSNTYVRSNLINLY +VAGGFDLERARYMFDEM
Sbjct: 122 FLLSACARSRLFREGEQIHGRVLANGCHSNTYVRSNLINLYLNVAGGFDLERARYMFDEM 181

Query: 443 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 502
           LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNV+TWTTMVAGLAQNGHCKLALSIFN
Sbjct: 182 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVQTWTTMVAGLAQNGHCKLALSIFN 241

Query: 503 QMRRAGVELDQVALVAALT 521
           QMRRAGVELDQVALVAAL+
Sbjct: 242 QMRRAGVELDQVALVAALS 260

[Close]

BLAST of Cp4.1LG02g10320 vs. NCBI nr
Match: XP_023521868.1 (ribulose-phosphate 3-epimerase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456 bits (1173), Expect = 4.07e-156
Identity = 247/281 (87.90%), Postives = 248/281 (88.26%), Query Frame = 0


Query: 21  MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEI 80
           MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEI
Sbjct: 1   MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEI 60

Query: 81  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 140
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 141 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------------- 200
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK                
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 201 --------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 260
                   +VDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 240

Query: 261 NAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 277
           NAYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 241 NAYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKTSKR 277

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy TrEMBL
Match: A0A6J1GB58 (pentatricopeptide repeat-containing protein At5g66520-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452391 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 4.88e-170
Identity = 255/259 (98.46%), Postives = 258/259 (99.61%), Query Frame = 0


Query: 263 EVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 322
           +VNETAISAIGRSSRARQQFLFS+LKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY
Sbjct: 2   QVNETAISAIGRSSRARQQFLFSVLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 61

Query: 323 VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 382
           VSFGSLRTAQKVFEDVSSP TTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS
Sbjct: 62  VSFGSLRTAQKVFEDVSSPGTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 121

Query: 383 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 442
           FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYA+VAGGFDLERARYMFDEM
Sbjct: 122 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYANVAGGFDLERARYMFDEM 181

Query: 443 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 502
           LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN
Sbjct: 182 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 241

Query: 503 QMRRAGVELDQVALVAALT 521
           QMRRAGVELDQVALVAALT
Sbjct: 242 QMRRAGVELDQVALVAALT 260

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy TrEMBL
Match: A0A6J1KD31 (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita maxima OX=3661 GN=LOC111492775 PE=4 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 1.67e-165
Identity = 248/259 (95.75%), Postives = 256/259 (98.84%), Query Frame = 0


Query: 263 EVNETAISAIGRSSRARQQFLFSLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLY 322
           +VNETAISA+GR+SRARQQFLFS+LKCCKSVRNLT+IHAQIVTSGLTQKNFILVNLLSLY
Sbjct: 2   QVNETAISAVGRNSRARQQFLFSVLKCCKSVRNLTEIHAQIVTSGLTQKNFILVNLLSLY 61

Query: 323 VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYS 382
           VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRM AAEVEADEFTYS
Sbjct: 62  VSFGSLRTAQKVFEDVSSPSTTVWNQIIRGHARSKTPQESIELFKRMTAAEVEADEFTYS 121

Query: 383 FLLSACARSRLFREGEQIHGRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEM 442
           FLLSACARSRLFREGEQIHGRVLANG HSNTYVRSNLINLY +VAGGFDLERARYMFDEM
Sbjct: 122 FLLSACARSRLFREGEQIHGRVLANGCHSNTYVRSNLINLYLNVAGGFDLERARYMFDEM 181

Query: 443 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFN 502
           LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNV+TWTTMVAGLAQNGHCKLALSIFN
Sbjct: 182 LERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVQTWTTMVAGLAQNGHCKLALSIFN 241

Query: 503 QMRRAGVELDQVALVAALT 521
           QMRRAGVELDQVALVAAL+
Sbjct: 242 QMRRAGVELDQVALVAALS 260

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy TrEMBL
Match: A0A6J1KAF8 (Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111493142 PE=3 SV=1)

HSP 1 Score: 455 bits (1170), Expect = 5.62e-156
Identity = 246/281 (87.54%), Postives = 248/281 (88.26%), Query Frame = 0


Query: 21  MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEI 80
           MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKS+I
Sbjct: 1   MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSDI 60

Query: 81  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 140
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 141 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------------- 200
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK                
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 201 --------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 260
                   +VDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 240

Query: 261 NAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 277
           NAYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 241 NAYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKTSKR 277

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy TrEMBL
Match: A0A6J1GD21 (Pentose-5-phosphate 3-epimerase OS=Cucurbita moschata OX=3662 GN=LOC111452869 PE=3 SV=1)

HSP 1 Score: 452 bits (1163), Expect = 6.47e-155
Identity = 245/281 (87.19%), Postives = 247/281 (87.90%), Query Frame = 0


Query: 21  MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEI 80
           MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTS TFSRRSYKNVVKASARVDKYSKS+I
Sbjct: 1   MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSHTFSRRSYKNVVKASARVDKYSKSDI 60

Query: 81  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 140
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 141 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------------- 200
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK                
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 201 --------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 260
                   +VDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 240

Query: 261 NAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 277
           NAYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 241 NAYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKTSKR 277

[Close]

BLAST of Cp4.1LG02g10320 vs. ExPASy TrEMBL
Match: A0A6J1KPK9 (Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111495357 PE=3 SV=1)

HSP 1 Score: 436 bits (1122), Expect = 1.06e-148
Identity = 236/281 (83.99%), Postives = 240/281 (85.41%), Query Frame = 0


Query: 21  MAVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEI 80
           MAVASLCQSTM  QVSG IGGLTFQK ALSQPTSL FSRR ++NV KASARVDKYSKS+I
Sbjct: 1   MAVASLCQSTMQPQVSGFIGGLTFQKPALSQPTSLPFSRRRFRNVAKASARVDKYSKSDI 60

Query: 81  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 140
           IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61  IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120

Query: 141 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------------- 200
           DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK                
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPATSL 180

Query: 201 --------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPA 260
                   +VDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGP 
Sbjct: 181 TTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPG 240

Query: 261 NAYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 277
           NAYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 241 NAYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKTSKR 277

[Close]

BLAST of Cp4.1LG02g10320 vs. TAIR 10
Match: AT5G61410.1 (D-ribulose-5-phosphate-3-epimerase )

HSP 1 Score: 386.0 bits (990), Expect = 4.9e-107
Identity = 212/280 (75.71%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 22  AVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEII 81
           + ASLC S  ++QV+G   GL  ++  L QPTS +FSRR    +VKAS+RVD++SKS+II
Sbjct: 4   SAASLCCS--STQVNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDII 63

Query: 82  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 141
           VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 64  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 123

Query: 142 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK----------------- 201
           VHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT+NQIK                 
Sbjct: 124 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 183

Query: 202 -------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPAN 261
                  MVDLVLIMSVNPGFGGQSFIESQVKKIS+LR++CAEKGVNPWIEVDGGV PAN
Sbjct: 184 AIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPAN 243

Query: 262 AYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 278
           AYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 244 AYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKASKR 275

[Close]

BLAST of Cp4.1LG02g10320 vs. TAIR 10
Match: AT5G61410.2 (D-ribulose-5-phosphate-3-epimerase )

HSP 1 Score: 386.0 bits (990), Expect = 4.9e-107
Identity = 212/280 (75.71%), Postives = 228/280 (81.43%), Query Frame = 0


Query: 22  AVASLCQSTMNSQVSGLIGGLTFQKLALSQPTSLTFSRRSYKNVVKASARVDKYSKSEII 81
           + ASLC S  ++QV+G   GL  ++  L QPTS +FSRR    +VKAS+RVD++SKS+II
Sbjct: 4   SAASLCCS--STQVNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDII 63

Query: 82  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 141
           VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 64  VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 123

Query: 142 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK----------------- 201
           VHLMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT+NQIK                 
Sbjct: 124 VHLMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLS 183

Query: 202 -------MVDLVLIMSVNPGFGGQSFIESQVKKISELRRLCAEKGVNPWIEVDGGVGPAN 261
                  MVDLVLIMSVNPGFGGQSFIESQVKKIS+LR++CAEKGVNPWIEVDGGV PAN
Sbjct: 184 AIEYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPAN 243

Query: 262 AYKVIEAGANALVAGSAVFGAKDYAEVNETAISAIGRSSR 278
           AYKVIEAGANALVAGSAVFGAKDYAE    AI  I  S R
Sbjct: 244 AYKVIEAGANALVAGSAVFGAKDYAE----AIKGIKASKR 275

[Close]

BLAST of Cp4.1LG02g10320 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-40
Identity = 87/240 (36.25%), Postives = 144/240 (60.00%), Query Frame = 0


Query: 285 SLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLYV---SFGSLRTAQKVFEDVSSP 344
           SLL  CK++++L  IHAQ++  GL   N+ L  L+   +    F  L  A  VF+ +  P
Sbjct: 38  SLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEP 97

Query: 345 STTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYSFLLSACARSRLFREGEQIH 404
           +  +WN + RGHA S  P  +++L+  M +  +  + +T+ F+L +CA+S+ F+EG+QIH
Sbjct: 98  NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIH 157

Query: 405 GRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEMLERNVVGWNSLLAGYVRRG 464
           G VL  G   + YV ++LI++Y  V  G  LE A  +FD+   R+VV + +L+ GY  RG
Sbjct: 158 GHVLKLGCDLDLYVHTSLISMY--VQNG-RLEDAHKVFDKSPHRDVVSYTALIKGYASRG 217

Query: 465 DFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFNQMRRAGVELDQVALVAALT 522
             + A+K+FDE+P ++V +W  M++G A+ G+ K AL +F  M +  V  D+  +V  ++
Sbjct: 218 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 274

[Close]

BLAST of Cp4.1LG02g10320 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-38
Identity = 90/240 (37.50%), Postives = 138/240 (57.50%), Query Frame = 0


Query: 285 SLLKCCKSVRNLTKIHAQIVTSGLTQKNFILVNLLSLYVSFGS---LRTAQKVFEDVSSP 344
           S L+ C     L +IHA+++ +GL Q ++ +   LS  +S  S   L  AQ VF+    P
Sbjct: 19  SCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRP 78

Query: 345 STTVWNQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYSFLLSACARSRLFREGEQIH 404
            T +WN +IRG + S  P+ S+ L++RM  +    + +T+  LL AC+    F E  QIH
Sbjct: 79  DTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138

Query: 405 GRVLANGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEMLERNVVGWNSLLAGYVRRG 464
            ++   GY ++ Y  ++LIN YA V G F L  A  +FD + E + V WNS++ GYV+ G
Sbjct: 139 AQITKLGYENDVYAVNSLINSYA-VTGNFKL--AHLLFDRIPEPDDVSWNSVIKGYVKAG 198

Query: 465 DFDGARKVFDEMPERNVRTWTTMVAGLAQNGHCKLALSIFNQMRRAGVELDQVALVAALT 522
             D A  +F +M E+N  +WTTM++G  Q    K AL +F++M+ + VE D V+L  AL+
Sbjct: 199 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255

[Close]

BLAST of Cp4.1LG02g10320 vs. TAIR 10
Match: AT5G15300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 146.7 bits (369), Expect = 5.0e-35
Identity = 84/266 (31.58%), Postives = 142/266 (53.38%), Query Frame = 0


Query: 290 CKSVRNLTKIHAQIVTSGLTQKNFILVNLL---SLYVSFGSLRTAQKVFEDVSSPSTTVW 349
           CK++R L +IHA +V +GL     ++  L+   SL V  G+L+ A K+F+++  P  ++ 
Sbjct: 22  CKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVP-GALKYAHKLFDEIPKPDVSIC 81

Query: 350 NQIIRGHARSKTPQESIELFKRMAAAEVEADEFTYSFLLSACARSRLFREGEQIHGRVLA 409
           N ++RG A+S  P++++ L+  M    V  D +T++F+L AC++      G   HG+V+ 
Sbjct: 82  NHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVR 141

Query: 410 NGYHSNTYVRSNLINLYADVAGGFDLERARYMFDEMLERNVVGWNSLLAGYVRRGDFDGA 469
           +G+  N YV++ LI  +A+     DL  A  +FD+  + + V W+S+ +GY +RG  D A
Sbjct: 142 HGFVLNEYVKNALILFHANCG---DLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEA 201

Query: 470 RKVFDEMP-------------------------------ERNVRTWTTMVAGLAQNGHCK 522
            ++FDEMP                               E++V TW  M++G    G+ K
Sbjct: 202 MRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPK 261

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g10320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43157	3.6e-110	75.62	Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea OX=3562 GN=RP...	[more]
Q9SAU2	6.9e-106	75.71	Ribulose-5-phosphate-3-epimerase, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q43843	1.3e-104	73.38	Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum OX...	[more]
Q9ZTP5	1.8e-98	74.62	Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica OX...	[more]
P74061	1.1e-66	58.85	Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) O...	[more]

BLAST of Cp4.1LG02g10320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525439.1	1.54e-171	99.61	pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita pepo subsp...	[more]
KAG6607462.1	2.50e-170	98.84	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022948853.1	1.01e-169	98.46	pentatricopeptide repeat-containing protein At5g66520-like isoform X1 [Cucurbita...	[more]
XP_022997984.1	3.45e-165	95.75	pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima]	[more]
XP_023521868.1	4.07e-156	87.90	ribulose-phosphate 3-epimerase, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG02g10320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GB58	4.88e-170	98.46	pentatricopeptide repeat-containing protein At5g66520-like isoform X1 OS=Cucurbi...	[more]
A0A6J1KD31	1.67e-165	95.75	pentatricopeptide repeat-containing protein At5g66520-like OS=Cucurbita maxima O...	[more]
A0A6J1KAF8	5.62e-156	87.54	Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111493142 PE=3...	[more]
A0A6J1GD21	6.47e-155	87.19	Pentose-5-phosphate 3-epimerase OS=Cucurbita moschata OX=3662 GN=LOC111452869 PE...	[more]
A0A6J1KPK9	1.06e-148	83.99	Pentose-5-phosphate 3-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111495357 PE=3...	[more]

BLAST of Cp4.1LG02g10320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61410.1	4.9e-107	75.71	D-ribulose-5-phosphate-3-epimerase	[more]
AT5G61410.2	4.9e-107	75.71	D-ribulose-5-phosphate-3-epimerase	[more]
AT1G08070.1	1.8e-40	36.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G66520.1	1.7e-38	37.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G15300.1	5.0e-35	31.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 70..183 e-value: 4.2E-45 score: 155.4
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 184..280 e-value: 1.7E-31 score: 111.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 281..428 e-value: 7.8E-19 score: 70.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 429..521 e-value: 3.6E-24 score: 87.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 480..512 e-value: 2.6E-7 score: 28.4 coord: 450..478 e-value: 1.9E-7 score: 28.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 445..478 e-value: 3.3E-8 score: 33.6 coord: 341..390 e-value: 6.2E-8 score: 32.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 480..509 e-value: 7.4E-7 score: 29.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 446..480 score: 12.112294
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 342..376 score: 9.152743
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 377..411 score: 9.437737
IPR000056	Ribulose-phosphate 3-epimerase-like	PFAM	PF00834	Ribul_P_3_epim	coord: 82..184 e-value: 2.4E-41 score: 141.3
IPR000056	Ribulose-phosphate 3-epimerase-like	PANTHER	PTHR11749	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	coord: 20..184 coord: 185..272
IPR000056	Ribulose-phosphate 3-epimerase-like	PROSITE	PS01085	RIBUL_P_3_EPIMER_1	coord: 109..123
IPR000056	Ribulose-phosphate 3-epimerase-like	PROSITE	PS01086	RIBUL_P_3_EPIMER_2	coord: 189..211
IPR000056	Ribulose-phosphate 3-epimerase-like	CDD	cd00429	RPE	coord: 81..264 e-value: 2.82422E-107 score: 317.114
None	No IPR available	PIRSR	PIRSR001461-2	PIRSR001461-2	coord: 81..184 e-value: 6.2E-39 score: 131.2
None	No IPR available	PIRSR	PIRSR001461-3	PIRSR001461-3	coord: 81..184 e-value: 1.0E-38 score: 130.5 coord: 280..312 e-value: 190.0 score: -1.0
None	No IPR available	PANTHER	PTHR11749:SF13	SUBFAMILY NOT NAMED	coord: 185..272
None	No IPR available	PANTHER	PTHR11749:SF13	SUBFAMILY NOT NAMED	coord: 20..184
IPR026019	Ribulose-phosphate 3-epimerase	HAMAP	MF_02227	RPE	coord: 79..271 score: 49.077141
IPR011060	Ribulose-phosphate binding barrel	SUPERFAMILY	51366	Ribulose-phoshate binding barrel	coord: 80..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g10320.1	Cp4.1LG02g10320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0019323	pentose catabolic process
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005829	cytosol
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004750	ribulose-phosphate 3-epimerase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives