Cp4.1LG02g09780 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g09780
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Cp4.1LG02: 8747885 .. 8749265 (-)
RNA-Seq Expression	Cp4.1LG02g09780
Synteny	Cp4.1LG02g09780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCTTGGCACCCTCCACCGCCTCCGCCTCTCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCAGCTTCCTCTGCTTCTAGCCCGGTCACCTCCAAGATCGTGGCCCTTTTCGGGAAGAAGCCAGCCCCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCAGCCAATGACGAGCTCGCCAAGTGGTATGGTAAGTCCAACCGTTAAGACCCAGAAACAAAAGTACTCTTCTCCCTCTTTCCATTGCTCTAATACCACCATGTTAAAATTGAGAAACAAATTCCGTCATAAAGCTTTGAAGTAGTGATAATTCACACGCTTATACATATTTTCTTTTTCTTGAGCTGATCTCGAGTGTATTCATCGCTATTAATTAGGTCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGAGTATGACTTAATTTCTTATCCTCTTTCCTATAATTTTCTTAAGCTTCGTTTGATAATCATTTAATTGGGCCGATTACGATTGCAGCTACGGTTACGACCCCTTCGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAGTAAATAAAAATTCTGAATTAATTTAGAATTGAGTTGAAGTAGTAAAGAAGAGCTTAGTGGGTTTGTTTATTGGCAGATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTGTGGTTCAAGGTCTAATTCTCTGCACTAATAATCTCTGTTTGGAAGTGCTTTTAAGCTAAAACTGCTCAATTCTGATCCAATATGGGATGTTGCAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGCTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGGTACGTTTTGAATGATGAAAAATTATGAAAAGGGTATGAAGTATTTGAGCTGAATGATGGTTTTGTGTAGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA

mRNA sequence

ATGGCCTCCTTGGCACCCTCCACCGCCTCCGCCTCTCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCAGCTTCCTCTGCTTCTAGCCCGGTCACCTCCAAGATCGTGGCCCTTTTCGGGAAGAAGCCAGCCCCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCAGCCAATGACGAGCTCGCCAAGTGGTATGGTCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTGTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGCTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA

Coding sequence (CDS)

ATGGCCTCCTTGGCACCCTCCACCGCCTCCGCCTCTCTCGGTGTCTCTGAAATGCTGAGAAATCCCCTCAGCTTCTCCGGCGCCTCCGCCAGGTCAGCTTCCTCTGCTTCTAGCCCGGTCACCTCCAAGATCGTGGCCCTTTTCGGGAAGAAGCCAGCCCCCGCTCCCAAGCCCAAGCCCTCCGCTGTCTCTCCAGCCAATGACGAGCTCGCCAAGTGGTATGGTCCCGACAGGAGGATTTTCCTCCCCGACGGGTTATTGGACCGATCCGAGATCCCCGAATACCTGAACGGAGAAGTCCCCGGAGACTACGGTTACGACCCCTTCGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCATTTGAGTTGATCCACGCACGATGGGCCATGCTTGGAGCTGCTGGGTTCATCATCCCTGAGGCCTTCAACAAATTCGGTGCCAACTGCGGCCCTGAGGCTGTGTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCGATCAACCTCATTGTCGCGGTCGCTGCAGAGGTTGTTCTTGTCGGTGGTGCAGAGTACTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTCCACCCGGGCGGTCCGTTCGACCCGTTGGGGCTGGCGGACGACCCGGACCAGGCGGCGATCTTGAAGGTGAAGGAGATCAAGAATGGAAGACTGGCAATGTTTGCAATGCTGGGGTTTTACTTCCAGGCCTACGTGACCGGAGAAGGGCCGGTGGAGAATTTGGCGAAGCATTTGAGCGATCCTTTTGCAAACAATTTGCTCACAGTCATTTCTGGGAATGCAGAGAGAGTTCCAACTCTTTGA

Protein sequence

MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKPSAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL

Homology

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy Swiss-Prot
Match: Q9XF89 (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 1.4e-132
Identity = 236/282 (83.69%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 11  ASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFG-KKPAPAPKPKPSAVSPANDE 70
           ASLGVSEML  PL+F   S  SA  ASSP T K VALF  KKPAPA   K  AVS  +DE
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPA---KSKAVSETSDE 61

Query: 71  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHA 130
           LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F+KYQAFELIHA
Sbjct: 62  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 121

Query: 131 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVAAE 190
           RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NIPINL++AV AE
Sbjct: 122 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 181

Query: 191 VVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLG 250
           VVL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLG
Sbjct: 182 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 241

Query: 251 FYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           F+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AER PTL
Sbjct: 242 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy Swiss-Prot
Match: P27517 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta OX=3047 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.6e-57
Identity = 118/239 (49.37%), Postives = 151/239 (63.18%), Query Frame = 0


Query: 44  IVALFGKKPAPAPKPKPSAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGD 103
           ++A  G K     + +   ++       ++YGPDR  FL  G    ++ PEYL GE PGD
Sbjct: 4   LIARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGD 63

Query: 104 YGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 163
           YG+D  GLS  P+ F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA
Sbjct: 64  YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 123

Query: 164 LLLDGNTLNYFGNNIPI---NLIVAVAAEVVLVGGAEYYRIING----LNFEDKLHPGGP 223
            +     LNY GN   I   ++I  +A +VVL+G AE YR   G    L+  D L+PGGP
Sbjct: 124 QIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP 183

Query: 224 FDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFAN 276
           FDPLGLADDPD  A LKVKEIKNGRLAMF+ LGF+ QA VTG+GPV+NL  HL+DP  N
Sbjct: 184 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy Swiss-Prot
Match: P12330 (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB1R PE=2 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-56
Identity = 134/262 (51.15%), Postives = 161/262 (61.45%), Query Frame = 0


Query: 26  SGASARSASSASSPVTSKIVALFG------KKPAPAPKPKPSAVSPANDELAKWYGPDRR 85
           S   AR+A S SS       ALFG      +K A  PKP  S+ SP       WYG DR 
Sbjct: 10  SPVMARAAPSTSS-------ALFGEARITMRKTAAKPKPAASSGSP-------WYGADRV 69

Query: 86  IFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGF 145
           ++L  G L   E P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWAMLGA G 
Sbjct: 70  LYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC 129

Query: 146 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NLIVAVAAEVVLVGGA 205
           + PE   + G   G EAVWFK G+ +     L+Y GN   I   +++   A +VVL+G  
Sbjct: 130 VFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAV 189

Query: 206 EYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQA 265
           E YRI  G   E  D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+M GF+ QA
Sbjct: 190 EGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 249

Query: 266 YVTGEGPVENLAKHLSDPFANN 277
            VTG+GP+ENLA HL+DP  NN
Sbjct: 250 IVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy Swiss-Prot
Match: P12331 (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB2R PE=2 SV=2)

HSP 1 Score: 219.5 bits (558), Expect = 4.8e-56
Identity = 121/227 (53.30%), Postives = 147/227 (64.76%), Query Frame = 0


Query: 55  APKPKPSAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKK 114
           A KPKP+A        + WYG DR ++L  G L   E P YL GE PGDYG+D  GLS  
Sbjct: 33  AAKPKPAASG------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSAD 92

Query: 115 PEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 174
           PE F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y 
Sbjct: 93  PETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 152

Query: 175 GNNIPI---NLIVAVAAEVVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQA 234
           GN   I   +++   A +VVL+G  E YRI  G   E  D L+PGG FDPLGLADDP+  
Sbjct: 153 GNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 212

Query: 235 AILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANN 277
           A LKVKEIKNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 213 AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy Swiss-Prot
Match: P15194 (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris OX=3349 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-55
Identity = 112/216 (51.85%), Postives = 141/216 (65.28%), Query Frame = 0


Query: 66  ANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFE 125
           A+   + WYGPDR ++L        E P YL GE PGDYG+D  GLS  PE+F+K +  E
Sbjct: 51  ASASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELE 110

Query: 126 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NL 185
           +IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y GN   +   ++
Sbjct: 111 VIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSI 170

Query: 186 IVAVAAEVVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 245
           +   A +V+L+G  E YRI  G   E  D ++PGG FDPLGLA+DP+  A LKVKEIKNG
Sbjct: 171 LAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNG 230

Query: 246 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANN 277
           RLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 231 RLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262

[Close]

BLAST of Cp4.1LG02g09780 vs. NCBI nr
Match: XP_023523842.1 (chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584 bits (1505), Expect = 2.72e-210
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP
Sbjct: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. NCBI nr
Match: XP_022932496.1 (chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 580 bits (1494), Expect = 1.29e-208
Identity = 289/291 (99.31%), Postives = 290/291 (99.66%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. NCBI nr
Match: KAG6607551.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 578 bits (1490), Expect = 5.27e-208
Identity = 288/291 (98.97%), Postives = 289/291 (99.31%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAP PKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPTPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. NCBI nr
Match: KAG7037190.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 576 bits (1484), Expect = 4.33e-207
Identity = 287/291 (98.63%), Postives = 289/291 (99.31%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVA+FGKKPA APKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. NCBI nr
Match: XP_022973438.1 (chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima])

HSP 1 Score: 570 bits (1470), Expect = 5.90e-205
Identity = 284/291 (97.59%), Postives = 286/291 (98.28%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLS SGASARSASSASSPVTSKIVA+FGKKPA APKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy TrEMBL
Match: A0A6J1EWI5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438899 PE=3 SV=1)

HSP 1 Score: 580 bits (1494), Expect = 6.26e-209
Identity = 289/291 (99.31%), Postives = 290/291 (99.66%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy TrEMBL
Match: A0A6J1ID20 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471983 PE=3 SV=1)

HSP 1 Score: 570 bits (1470), Expect = 2.85e-205
Identity = 284/291 (97.59%), Postives = 286/291 (98.28%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLS SGASARSASSASSPVTSKIVA+FGKKPA APKPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SAVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy TrEMBL
Match: A0A0A0KXR5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G646700 PE=3 SV=1)

HSP 1 Score: 542 bits (1396), Expect = 4.87e-194
Identity = 271/291 (93.13%), Postives = 274/291 (94.16%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSFS    RSA S S+P T K VALFGKKPA   KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSS---RSAPSPSTPATFKTVALFGKKPAAPAKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           SA SP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy TrEMBL
Match: A0A6J1DTI7 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022982 PE=3 SV=1)

HSP 1 Score: 541 bits (1393), Expect = 1.50e-193
Identity = 272/291 (93.47%), Postives = 274/291 (94.16%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSF G S RSA SASS VT K VALFGKKPA   KP  
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFGGGSPRSAPSASSSVTVKTVALFGKKPAAKAKPS- 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           +AVSP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  AAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGN ERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNVERVPTL 290

[Close]

BLAST of Cp4.1LG02g09780 vs. ExPASy TrEMBL
Match: A0A1S3CBI9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498611 PE=3 SV=1)

HSP 1 Score: 540 bits (1391), Expect = 2.92e-193
Identity = 271/291 (93.13%), Postives = 273/291 (93.81%), Query Frame = 0


Query: 1   MASLAPSTASASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60
           MASLA STA+ASLGVSEMLRNPLSFS  SA    SASSP T K VALFGKKPA   KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPP--SASSPATFKTVALFGKKPAAPSKPKP 60

Query: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120
           +  SP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK
Sbjct: 61  APASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289

[Close]

BLAST of Cp4.1LG02g09780 vs. TAIR 10
Match: AT4G10340.1 (light harvesting complex of photosystem II 5 )

HSP 1 Score: 473.8 bits (1218), Expect = 1.0e-133
Identity = 236/282 (83.69%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 11  ASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFG-KKPAPAPKPKPSAVSPANDE 70
           ASLGVSEML  PL+F   S  SA  ASSP T K VALF  KKPAPA   K  AVS  +DE
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPA---KSKAVSETSDE 61

Query: 71  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHA 130
           LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F+KYQAFELIHA
Sbjct: 62  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 121

Query: 131 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVAAE 190
           RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NIPINL++AV AE
Sbjct: 122 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 181

Query: 191 VVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLG 250
           VVL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLG
Sbjct: 182 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 241

Query: 251 FYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 292
           F+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AER PTL
Sbjct: 242 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of Cp4.1LG02g09780 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 208.0 bits (528), Expect = 1.0e-53
Identity = 112/209 (53.59%), Postives = 136/209 (65.07%), Query Frame = 0


Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYGPDR  +L          P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWA
Sbjct: 49  WYGPDRPKYLGP---FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 108

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAV-AAE 192
           MLGA G   PE  +K G   G EAVWFK G+ +     L+Y GN   I    I+A+ A +
Sbjct: 109 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 168

Query: 193 VVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 252
           VVL+G  E YRI  G   E  D L+PGG FDPL LA+DP+  + LKVKE+KNGRLAMF+M
Sbjct: 169 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 228

Query: 253 LGFYFQAYVTGEGPVENLAKHLSDPFANN 277
            GF+ QA VTG+GP+ENL  HL+DP ANN
Sbjct: 229 FGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of Cp4.1LG02g09780 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-53
Identity = 111/209 (53.11%), Postives = 136/209 (65.07%), Query Frame = 0


Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYGPDR  +L          P YL GE PGDYG+D  GLS  PE F+K +  E+IH+RWA
Sbjct: 50  WYGPDRPKYLGP---FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 109

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAV-AAE 192
           MLGA G   PE  +K G   G EAVWFK G+ +     L+Y GN   I    I+A+ A +
Sbjct: 110 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 169

Query: 193 VVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAM 252
           VVL+G  E YRI  G   E  D L+PGG FDPL LA+DP+  + LKVKE+KNGRLAMF+M
Sbjct: 170 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 229

Query: 253 LGFYFQAYVTGEGPVENLAKHLSDPFANN 277
            GF+ QA VTG+GP+ENL  H++DP ANN
Sbjct: 230 FGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]

BLAST of Cp4.1LG02g09780 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 204.9 bits (520), Expect = 8.7e-53
Identity = 121/270 (44.81%), Postives = 160/270 (59.26%), Query Frame = 0


Query: 13  LGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKPSAVSPANDELAK 72
           +  S M  +  +F+G + + + +AS  + S  V +         KPK  + SP       
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTM----RKTVAKPKGPSGSP------- 60

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYG DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWA
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 120

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NLIVAVAAE 192
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +   +++   A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 180

Query: 193 VVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 252
           V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+
Sbjct: 181 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 240

Query: 253 MLGFYFQAYVTGEGPVENLAKHLSDPFANN 277
           M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of Cp4.1LG02g09780 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-52
Identity = 121/270 (44.81%), Postives = 159/270 (58.89%), Query Frame = 0


Query: 13  LGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKPSAVSPANDELAK 72
           +  S M  +  +F+G +   + +AS  + S  V +         KPK  + SP       
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTM----RKTVAKPKGPSGSP------- 60

Query: 73  WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 132
           WYG DR  +L        E P YL GE PGDYG+D  GLS  PE F++ +  E+IH+RWA
Sbjct: 61  WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 120

Query: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI---NLIVAVAAE 192
           MLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   +   +++   A +
Sbjct: 121 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 180

Query: 193 VVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 252
           V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+
Sbjct: 181 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 240

Query: 253 MLGFYFQAYVTGEGPVENLAKHLSDPFANN 277
           M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 241 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g09780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF89	1.4e-132	83.69	Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P27517	2.6e-57	49.37	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella ter...	[more]
P12330	1.3e-56	51.15	Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
P12331	4.8e-56	53.30	Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
P15194	1.4e-55	51.85	Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvest...	[more]

BLAST of Cp4.1LG02g09780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523842.1	2.72e-210	100.00	chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita pepo subsp. ...	[more]
XP_022932496.1	1.29e-208	99.31	chlorophyll a-b binding protein CP26, chloroplastic-like [Cucurbita moschata]	[more]
KAG6607551.1	5.27e-208	98.97	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]
KAG7037190.1	4.33e-207	98.63	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]
XP_022973438.1	5.90e-205	97.59	chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima]	[more]

BLAST of Cp4.1LG02g09780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWI5	6.26e-209	99.31	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1ID20	2.85e-205	97.59	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0KXR5	4.87e-194	93.13	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1DTI7	1.50e-193	93.47	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3CBI9	2.92e-193	93.13	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Cp4.1LG02g09780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10340.1	1.0e-133	83.69	light harvesting complex of photosystem II 5	[more]
AT2G05100.1	1.0e-53	53.59	photosystem II light harvesting complex gene 2.1	[more]
AT3G27690.1	1.8e-53	53.11	photosystem II light harvesting complex gene 2.3	[more]
AT1G29930.1	8.7e-53	44.81	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	1.5e-52	44.81	chlorophyll A/B binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 93..254 e-value: 7.0E-46 score: 156.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 80..291 e-value: 2.0E-89 score: 300.8
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..291
None	No IPR available	PANTHER	PTHR21649:SF104	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..291
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 73..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g09780.1	Cp4.1LG02g09780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding