Cp4.1LG02g06940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG MAGINLISAAAVLLVLASIFNNNISHTQGLRLLPMEQEHPAVHLNSSPQSFHPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH Homology
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KAG6608491.1 (hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 179 bits (454), Expect = 1.72e-56 Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa]) HSP 1 Score: 87.4 bits (215), Expect = 6.55e-20 Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa]) HSP 1 Score: 82.8 bits (203), Expect = 4.33e-18 Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 75.5 bits (184), Expect = 2.72e-15 Identity = 52/97 (53.61%), Postives = 58/97 (59.79%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus]) HSP 1 Score: 71.2 bits (173), Expect = 1.50e-13 Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.17e-20 Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 2.09e-18 Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 7.27e-14 Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0
BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A2J6MI11 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 6.38e-04 Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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