Cp4.1LG02g06940 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g06940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG02: 855637 .. 855921 (-)
RNA-Seq ExpressionCp4.1LG02g06940
SyntenyCp4.1LG02g06940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

mRNA sequence

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Coding sequence (CDS)

ATGGCCGGAATCAATCTCATCTCCGCCGCCGCCGTCCTCCTGGTTTTAGCTTCTATCTTCAATAATAACATTTCACACACCCAAGGACTAAGGTTGCTGCCAATGGAGCAGGAGCATCCAGCCGTCCATCTCAATTCGAGCCCACAGTCATTTCACCCCTCTCCCATTGCTGCTACAGACGTGGACGTGCATGGCGGCGACTTCCGTCCCACCACACCCGGCCACAGCCCCGGCGCCGGTCACGGCCTTGCGCCGGACAGCCACGTGGATTCCAAAATCCATTAG

Protein sequence

MAGINLISAAAVLLVLASIFNNNISHTQGLRLLPMEQEHPAVHLNSSPQSFHPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH
Homology
BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KAG6608491.1 (hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (454), Expect = 1.72e-56
Identity = 92/96 (95.83%), Postives = 92/96 (95.83%), Query Frame = 0

Query: 1  MAGINLISAAA--VLLVLASIFNNNISHTQGLRLLPMEQEHPAVHLNSSPQSFHPSPIAA 60
          MAGINLISAAA  VLLVLASIFNNNI HTQGLRLLPMEQEHPAVHLNS PQSFHPSPIAA
Sbjct: 1  MAGINLISAAAAAVLLVLASIFNNNIPHTQGLRLLPMEQEHPAVHLNSRPQSFHPSPIAA 60

Query: 61 TDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
          TDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH
Sbjct: 61 TDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 96

BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: TYK20222.1 (hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 6.55e-20
Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 4   INLISAAAVLLVLASIFNNNISHTQGLRLLPMEQ---------------EHPAVH-LNSS 63
           I LIS  A +L+L+S FN  ISHTQ  RLLPME                E  AV  L S 
Sbjct: 6   IKLISTFAAILILSSTFN--ISHTQA-RLLPMENPDLVNIPEDLHRKTVETVAVAPLKSG 65

Query: 64  PQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           P +F H +  A  DV+V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDHDTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KAA0064365.1 (hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 4.33e-18
Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 4   INLISAAAVLLVLASIFNNNISHTQGLRLLPMEQ---------------EHPAVH-LNSS 63
           I LIS  A +L+L+S FN  ISHTQ  RLLP+E                E  AV  L S 
Sbjct: 6   IKLISTFAAILILSSTFN--ISHTQA-RLLPVENPDLVNIPEDIHRKTVETVAVAPLKSG 65

Query: 64  PQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           P +F H +  A  DV+V GGDFRPTT GHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDHDTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KAG6591363.1 (Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 2.72e-15
Identity = 52/97 (53.61%), Postives = 58/97 (59.79%), Query Frame = 0

Query: 14  LVLASIFNNNISHTQGLRLLPMEQEHPAVH--------------LNSSPQSFHPSPIAAT 73
           L+L+SI N  ISHT G RLLP+E  HP V               L S P +F  +  +  
Sbjct: 12  LILSSICN--ISHTHG-RLLPVE--HPIVGNLHRKIVETAGVAPLGSRPPAFQRTTSSPG 71

Query: 74  DVD--VHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           D D  V GGDFRPTTPGHSPG GH LAP SHVDSKIH
Sbjct: 72  DGDAEVLGGDFRPTTPGHSPGVGHSLAPASHVDSKIH 103

BLAST of Cp4.1LG02g06940 vs. NCBI nr
Match: KGN55172.1 (hypothetical protein Csa_012400 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.50e-13
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0

Query: 4   INLISAAAVLLVLASIFNNNISHTQGLRLLPMEQE---------HPAVH-------LNSS 63
           I LIS    +L+L+S F+  +SHTQ  R+ P +           HP +        L S 
Sbjct: 6   IKLISTFVAILILSSTFH--VSHTQA-RMPPTKNLDRVEISKDLHPKIEETVAVAPLKSE 65

Query: 64  PQSFHPSPIAAT-DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           P +F       T + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A5D3D9H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003590 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.17e-20
Identity = 59/108 (54.63%), Postives = 67/108 (62.04%), Query Frame = 0

Query: 4   INLISAAAVLLVLASIFNNNISHTQGLRLLPMEQ---------------EHPAVH-LNSS 63
           I LIS  A +L+L+S FN  ISHTQ  RLLPME                E  AV  L S 
Sbjct: 6   IKLISTFAAILILSSTFN--ISHTQA-RLLPMENPDLVNIPEDLHRKTVETVAVAPLKSG 65

Query: 64  PQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           P +F H +  A  DV+V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDHDTSFATIDVEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A5A7VEP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00660 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.09e-18
Identity = 57/108 (52.78%), Postives = 66/108 (61.11%), Query Frame = 0

Query: 4   INLISAAAVLLVLASIFNNNISHTQGLRLLPMEQ---------------EHPAVH-LNSS 63
           I LIS  A +L+L+S FN  ISHTQ  RLLP+E                E  AV  L S 
Sbjct: 6   IKLISTFAAILILSSTFN--ISHTQA-RLLPVENPDLVNIPEDIHRKTVETVAVAPLKSG 65

Query: 64  PQSF-HPSPIAATDVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           P +F H +  A  DV+V GGDFRPTT GHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDHDTSFATIDVEVLGGDFRPTTSGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A0A0L3I5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.27e-14
Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0

Query: 4   INLISAAAVLLVLASIFNNNISHTQGLRLLPMEQE---------HPAVH-------LNSS 63
           I LIS    +L+L+S F+  +SHTQ  R+ P +           HP +        L S 
Sbjct: 6   IKLISTFVAILILSSTFH--VSHTQA-RMPPTKNLDRVEISKDLHPKIEETVAVAPLKSE 65

Query: 64  PQSFHPSPIAAT-DVDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSKIH 94
           P +F       T + +V GGDFRPTTPGHSPGAGH +AP SH+DSKIH
Sbjct: 66  PLAFDRDTFFTTSNAEVLGGDFRPTTPGHSPGAGHSVAPTSHMDSKIH 110

BLAST of Cp4.1LG02g06940 vs. ExPASy TrEMBL
Match: A0A2J6MI11 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.38e-04
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 61 VDVHGGDFRPTTPGHSPGAGHGLAPDSHVDSK 92
          V ++ GDFRPTTPGHSPGAGH + P +  D +
Sbjct: 65 VVINEGDFRPTTPGHSPGAGHSVGPTATFDPQ 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608491.11.72e-5695.83hypothetical protein SDJN03_01833, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK20222.16.55e-2054.63hypothetical protein E5676_scaffold134G003590 [Cucumis melo var. makuwa][more]
KAA0064365.14.33e-1852.78hypothetical protein E6C27_scaffold255G00660 [Cucumis melo var. makuwa][more]
KAG6591363.12.72e-1553.61Precursor of CEP5, partial [Cucurbita argyrosperma subsp. sororia][more]
KGN55172.11.50e-1344.44hypothetical protein Csa_012400 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3D9H83.17e-2054.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VEP22.09e-1852.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0L3I57.27e-1444.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639110 PE=4 SV=1[more]
A0A2J6MI116.38e-0459.38Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_6X113501 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g06940.1Cp4.1LG02g06940.1mRNA