Cp4.1LG02g02540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L18a
Location	Cp4.1LG02: 3758438 .. 3760839 (+)
RNA-Seq Expression	Cp4.1LG02g02540
Synteny	Cp4.1LG02g02540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGTGGAAACAAAAAACACAGACGCATTTTGGGCCGGGCCGGTCCAGTACTCGTGCGACCCAAGTGCGAAGCAGATCTGTTTAGGGTTTTACTGAGCGTGGCGCTGTGGAGAGAACCAGCTCAAAGCACGTTGCCGATCTCTCTCAGATTATCGAGTGCAAAATGGTCTCATTCAGGGTAAGAATCTGCTTCATGGACGCTCAAATCGAGTCGGTTGTTCTTTTACATTTTTTTTTTCTGAACTTTTTCATTTCTGATAAGAATTGAGTTACAGTTGTAAAAGAATGCGTTGCAGTTGTTCATTGGGTTCTTTTCATCCATTTGGAAGTGAATTTGCAAGATTTTGATCTGTTTTTCATTTGTTTTCTCCCTTGCTTTCACGGAAAGCAGTTTCATCAGTACCAGGTCGTGGGGAGGGCTCTTCCTTCTGAAGCGGATGAGCATCCCAAGATTTATCGGATGAAGCTTTGGGCTACCAACGAGGTCCGGGCCAAATCCAAGTTCTGGTATGCTGTTTAATCCGTCGAGTATTATGTTTTGCTTGTTTACTGGGGAGAATTATGGAGTTTGAACAATTATGTTCATCTTGATCCTGTAGTCCTAGTTTAGCAGTTCTAAAATTTTCATATTACTGTTCATCAGTGCATTTAAGTTGTACAGTATCATTCTTTTTGCAAATTCATAGAAGTGTATGACTCATTAGATGGAAGATGTATTTTGTTCATTCAGGGATCTCTCATTTACTGTGTTCTATTTCTACCTATGATTTCAAACTCCAAGACAAAATTTGAAAGCAAAAAAGATTTGGTTTTCAGAAACTTGTTTCTGTTTTTTGATAATTGGTTCAAAATTCAATCTAGTCCTTAAGAAAGACAAGAAAAACATACTGAAAAAATGTTTTCATATATATTGCAAATTCAAAATTCAAACTTGTTTCTTCTCAAATGGATTTATGTTGTTATCCTGATTTCCTGATCCTCACACTGATAGGTACTTTTTGAGGAAGTTGAAGAAAGTCAAGAAGAGCAATGGTCAAGTTCTTGCCATTAACGAGGTATTGGGTCTAGAACACGCTTTTATATATTATGTCTTTTTTGTGCGACAATGCCAGTAGTCAATTGAGCTAGTTTCAGCTTTTTTGGTGCTCAACTCAAATCTGTTAGGTTTCTTTTGTCTACTAACTCCTCTATTTTATGCACAAACTTCTGCATATCATTCCTCCGAATGAAAAAAGAACATAGCTGGTTCATTCAAGTCTTGATGTATGCTTGCTGCGTTGTCGTATGTTTCATAAAGCGTGTGCGTTTCTTCTAAAGCTTTCCTTAGTTTCTAGAATATGTATGCATATTTATGTTTTTTTCGGATGAGATATAAGTATAATGGGAGCATTTGCCATTCCATCTGAATAGTTACTCCTAAGGGGTTATTTGGTTGGATGTTTTGTTTAAGATGCTATGTATGAGAATAGAATGTCGGGGAATCTGATAACTGTGTTTGATGTTAAATGAGAATGATATTAGAATTTCATATAAATAGATCATATTATTGTTTGGTTCCCACAATTACTTCTAGCAGTCTTATTACATTAGTTAATTTTAGATAATAAACGGTGGTTAGTTTATGTTTTCGAGTTAATTTAGCAACCAATCTTAATAATTATTTTCAAATAAATGAATTTAATATAGTTTTATAAACTTTTAATGGTGAATAATTCGTACAATAATTGAATAAGAAGAAGAGGAGAGTAAAGTTGATTCTTATAGTTTCATGTAAGATTCTTGGCTGCAAGTGAGCATCCCTTTTCTATTCCTTAGTTTCCTCCCTTAATGTTGCCTCCATGCTCTAAATCATTGATCTCAAATTCGTTTTGCAATTTGTAGATTTTTGAAAAGAACCCAACCAAGATTAAGAACTACGGTATTTGGCTGCGGTATCAGAGTCGAACTGGTTATCACAACATGTACAAGGAGTTTCGGGATACGACACTGAACGGGGGTGTTGAACAAATGTATAACGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACTGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACGAAGCAGTTTCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGACCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAACCCAACTTGTTTATGTAATTGTGTTCATCTTTCATTTAATTATTGATATGGGTATAGATTTACTTAGAGAATTAGATGAAATTTCTGCCAAACCATTCTTTTCTGTAGCACAATTATTCCTCTGTTTTGGAGACTGAGATGAGATTCACAATTTTGGTTGGACTGATATAAAGCAAATTTTCTTGCTTGATGTTAG

mRNA sequence

TATAGTGGAAACAAAAAACACAGACGCATTTTGGGCCGGGCCGGTCCAGTACTCGTGCGACCCAAGTGCGAAGCAGATCTGTTTAGGGTTTTACTGAGCGTGGCGCTGTGGAGAGAACCAGCTCAAAGCACGTTGCCGATCTCTCTCAGATTATCGAGTGCAAAATGGTCTCATTCAGGTTTCATCAGTACCAGGTCGTGGGGAGGGCTCTTCCTTCTGAAGCGGATGAGCATCCCAAGATTTATCGGATGAAGCTTTGGGCTACCAACGAGGTCCGGGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTCAAGAAGAGCAATGGTCAAGTTCTTGCCATTAACGAGATTTTTGAAAAGAACCCAACCAAGATTAAGAACTACGGTATTTGGCTGCGGTATCAGAGTCGAACTGGTTATCACAACATGTACAAGGAGTTTCGGGATACGACACTGAACGGGGGTGTTGAACAAATGTATAACGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACTGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACGAAGCAGTTTCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGACCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAACCCAACTTGTTTATGTAATTGTGTTCATCTTTCATTTAATTATTGATATGGGTATAGATTTACTTAGAGAATTAGATGAAATTTCTGCCAAACCATTCTTTTCTGTAGCACAATTATTCCTCTGTTTTGGAGACTGAGATGAGATTCACAATTTTGGTTGGACTGATATAAAGCAAATTTTCTTGCTTGATGTTAG

Coding sequence (CDS)

ATGGTCTCATTCAGGTTTCATCAGTACCAGGTCGTGGGGAGGGCTCTTCCTTCTGAAGCGGATGAGCATCCCAAGATTTATCGGATGAAGCTTTGGGCTACCAACGAGGTCCGGGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTCAAGAAGAGCAATGGTCAAGTTCTTGCCATTAACGAGATTTTTGAAAAGAACCCAACCAAGATTAAGAACTACGGTATTTGGCTGCGGTATCAGAGTCGAACTGGTTATCACAACATGTACAAGGAGTTTCGGGATACGACACTGAACGGGGGTGTTGAACAAATGTATAACGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACTGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACGAAGCAGTTTCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGACCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAACCCAACTTGTTTATGTAA

Protein sequence

MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRCPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM

Homology

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-91
Identity = 161/178 (90.45%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGR LPSE DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTAT+PAKLCKRES+KQFH+SKIKFPLV +K+RPP+RKLKT YKAS+PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-90
Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKE+RDTTLNGGVEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYKASKPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 332.8 bits (852), Expect = 2.4e-90
Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M +FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYKA+KPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.2e-88
Identity = 156/178 (87.64%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M +FRFHQYQVVGR LP+  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATV  KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KAS+PNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 4.2e-87
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA+KPNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: KAE8649787.1 (hypothetical protein Csa_012172 [Cucumis sativus])

HSP 1 Score: 355 bits (910), Expect = 2.38e-123
Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: XP_038898916.1 (60S ribosomal protein L18a [Benincasa hispida])

HSP 1 Score: 355 bits (910), Expect = 2.38e-123
Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: KAB1221347.1 (60S ribosomal protein L18a [Morella rubra])

HSP 1 Score: 353 bits (907), Expect = 6.82e-123
Identity = 170/178 (95.51%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALP+EADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNGGVEQMYNEMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: RDY14285.1 (60S ribosomal protein L18a [Mucuna pruriens])

HSP 1 Score: 352 bits (903), Expect = 2.78e-122
Identity = 170/178 (95.51%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALP+EADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMYNEMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKA KPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: XP_031736225.1 (60S ribosomal protein L18a [Cucumis sativus] >KAE8653191.1 hypothetical protein Csa_019606 [Cucumis sativus])

HSP 1 Score: 352 bits (903), Expect = 2.78e-122
Identity = 172/178 (96.63%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MVSFRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVSFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTK+KNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A6A1WBI9 (60S ribosomal protein L18a OS=Morella rubra OX=262757 GN=CJ030_MR2G005412 PE=3 SV=1)

HSP 1 Score: 353 bits (907), Expect = 3.30e-123
Identity = 170/178 (95.51%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALP+EADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNGGVEQMYNEMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKASRPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A371IH36 (60S ribosomal protein L18a OS=Mucuna pruriens OX=157652 GN=RPL18A PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.34e-122
Identity = 170/178 (95.51%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALP+EADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMYNEMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKA KPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A4D6NT19 (60S ribosomal protein L18a OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3825 PE=3 SV=1)

HSP 1 Score: 352 bits (903), Expect = 1.34e-122
Identity = 169/178 (94.94%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALP+EAD+HPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNGGVEQMYNEMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYNEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTAT+PAKLCKRESTKQFH+SKIKFPLVFKKVRPP+RKLKTTYKA KPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPSRKLKTTYKAKKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A5A7UDW7 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold504G00440 PE=3 SV=1)

HSP 1 Score: 352 bits (902), Expect = 1.91e-122
Identity = 170/178 (95.51%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVRC
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRC 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLV+KKVRPPTRKLKTTYKASKPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVYKKVRPPTRKLKTTYKASKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A6J1KGM6 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111495598 PE=3 SV=1)

HSP 1 Score: 352 bits (902), Expect = 1.91e-122
Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           MV+FRFHQYQVVGRALPSE+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV
Sbjct: 1   MVTFRFHQYQVVGRALPSESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKE+RDTTLNG VEQMYNEMASRHRVR 
Sbjct: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRH 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 178
           PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTR+LKTTYKASKPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRRLKTTYKASKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 334.0 bits (855), Expect = 7.6e-92
Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M  FRFHQYQVVGRALP+E DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQ+
Sbjct: 1   MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKE+RDTTLNGGVEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATVPAKLCKRE TKQFH+SKIKFPLVF+KVRPP+RKLKTTYKASKPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-91
Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M +FRFHQYQVVGRALP+E D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1   MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATVPAKLCKRESTKQFH+SKIKFPLVF+KVRPP+RKLKTTYKA+KPNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein )

HSP 1 Score: 322.0 bits (824), Expect = 3.0e-88
Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQV 60
           M   R HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+
Sbjct: 1   MSVIRLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQM 60

Query: 61  LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRC 120
           LAINEIFEKNPT IKN+GIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR 
Sbjct: 61  LAINEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120

Query: 121 PCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           PCIQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA+KPNLFM
Sbjct: 121 PCIQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 178

[Close]

BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 320.5 bits (820), Expect = 8.7e-88
Identity = 154/176 (87.50%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 3   SFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLA 62
           S   HQYQVVGRALP+E DE PKIYRMKLWATNEV AKSKFWY+LR+ KKVKKSNGQ+LA
Sbjct: 137 SIALHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLA 196

Query: 63  INEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRCPC 122
           INEIFEKNPT IKN+GIWLRYQSRTGYHNMYKE+RDTTLNG VEQMY EMASRHRVR PC
Sbjct: 197 INEIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPC 256

Query: 123 IQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM 179
           IQIIKTATVPA LCKRESTKQFH+SKIKFPLVF+KVRPPTRKLKTT+KA+KPNLFM
Sbjct: 257 IQIIKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLFM 312

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ATF5	1.3e-91	90.45	60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1	[more]
Q9LUD4	1.1e-90	90.45	60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=...	[more]
P51418	2.4e-90	89.89	60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=...	[more]
Q943F3	2.2e-88	87.64	60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE...	[more]
Q8L7K0	4.2e-87	87.08	60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=...	[more]

BLAST of Cp4.1LG02g02540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649787.1	2.38e-123	96.63	hypothetical protein Csa_012172 [Cucumis sativus]	[more]
XP_038898916.1	2.38e-123	96.63	60S ribosomal protein L18a [Benincasa hispida]	[more]
KAB1221347.1	6.82e-123	95.51	60S ribosomal protein L18a [Morella rubra]	[more]
RDY14285.1	2.78e-122	95.51	60S ribosomal protein L18a [Mucuna pruriens]	[more]
XP_031736225.1	2.78e-122	96.63	60S ribosomal protein L18a [Cucumis sativus] >KAE8653191.1 hypothetical protein ...	[more]

BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1WBI9	3.30e-123	95.51	60S ribosomal protein L18a OS=Morella rubra OX=262757 GN=CJ030_MR2G005412 PE=3 S...	[more]
A0A371IH36	1.34e-122	95.51	60S ribosomal protein L18a OS=Mucuna pruriens OX=157652 GN=RPL18A PE=3 SV=1	[more]
A0A4D6NT19	1.34e-122	94.94	60S ribosomal protein L18a OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3825 PE=3 ...	[more]
A0A5A7UDW7	1.91e-122	95.51	60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1KGM6	1.91e-122	96.63	60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111495598 PE=3 SV=1	[more]

BLAST of Cp4.1LG02g02540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14600.1	7.6e-92	90.45	Ribosomal protein L18ae/LX family protein	[more]
AT2G34480.1	1.7e-91	89.89	Ribosomal protein L18ae/LX family protein	[more]
AT1G29965.1	3.0e-88	87.08	Ribosomal protein L18ae/LX family protein	[more]
AT1G29970.2	8.7e-88	87.50	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021138	60S ribosomal protein L18a/ L20, eukaryotes	PIRSF	PIRSF002190	Ribosomal_L18a	coord: 1..178 e-value: 3.6E-71 score: 236.2
None	No IPR available	GENE3D	3.10.20.10		coord: 72..147 e-value: 7.5E-41 score: 140.4
None	No IPR available	GENE3D	3.10.20.10		coord: 1..71 e-value: 3.0E-38 score: 131.5
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 1..137
None	No IPR available	PANTHER	PTHR10052:SF45	60S RIBOSOMAL PROTEIN L18A	coord: 138..178
None	No IPR available	SUPERFAMILY	160374	RplX-like	coord: 71..146
IPR023573	Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A	PFAM	PF01775	Ribosomal_L18A	coord: 7..128 e-value: 2.4E-53 score: 179.4
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 138..178
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	PANTHER	PTHR10052	60S RIBOSOMAL PROTEIN L18A	coord: 1..137
IPR028877	50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a	HAMAP	MF_00273	Ribosomal_L18Ae	coord: 6..69 score: 24.336386

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02540.1	Cp4.1LG02g02540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome