Cp4.1LG02g02540 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAGTGGAAACAAAAAACACAGACGCATTTTGGGCCGGGCCGGTCCAGTACTCGTGCGACCCAAGTGCGAAGCAGATCTGTTTAGGGTTTTACTGAGCGTGGCGCTGTGGAGAGAACCAGCTCAAAGCACGTTGCCGATCTCTCTCAGATTATCGAGTGCAAAATGGTCTCATTCAGGGTAAGAATCTGCTTCATGGACGCTCAAATCGAGTCGGTTGTTCTTTTACATTTTTTTTTTCTGAACTTTTTCATTTCTGATAAGAATTGAGTTACAGTTGTAAAAGAATGCGTTGCAGTTGTTCATTGGGTTCTTTTCATCCATTTGGAAGTGAATTTGCAAGATTTTGATCTGTTTTTCATTTGTTTTCTCCCTTGCTTTCACGGAAAGCAGTTTCATCAGTACCAGGTCGTGGGGAGGGCTCTTCCTTCTGAAGCGGATGAGCATCCCAAGATTTATCGGATGAAGCTTTGGGCTACCAACGAGGTCCGGGCCAAATCCAAGTTCTGGTATGCTGTTTAATCCGTCGAGTATTATGTTTTGCTTGTTTACTGGGGAGAATTATGGAGTTTGAACAATTATGTTCATCTTGATCCTGTAGTCCTAGTTTAGCAGTTCTAAAATTTTCATATTACTGTTCATCAGTGCATTTAAGTTGTACAGTATCATTCTTTTTGCAAATTCATAGAAGTGTATGACTCATTAGATGGAAGATGTATTTTGTTCATTCAGGGATCTCTCATTTACTGTGTTCTATTTCTACCTATGATTTCAAACTCCAAGACAAAATTTGAAAGCAAAAAAGATTTGGTTTTCAGAAACTTGTTTCTGTTTTTTGATAATTGGTTCAAAATTCAATCTAGTCCTTAAGAAAGACAAGAAAAACATACTGAAAAAATGTTTTCATATATATTGCAAATTCAAAATTCAAACTTGTTTCTTCTCAAATGGATTTATGTTGTTATCCTGATTTCCTGATCCTCACACTGATAGGTACTTTTTGAGGAAGTTGAAGAAAGTCAAGAAGAGCAATGGTCAAGTTCTTGCCATTAACGAGGTATTGGGTCTAGAACACGCTTTTATATATTATGTCTTTTTTGTGCGACAATGCCAGTAGTCAATTGAGCTAGTTTCAGCTTTTTTGGTGCTCAACTCAAATCTGTTAGGTTTCTTTTGTCTACTAACTCCTCTATTTTATGCACAAACTTCTGCATATCATTCCTCCGAATGAAAAAAGAACATAGCTGGTTCATTCAAGTCTTGATGTATGCTTGCTGCGTTGTCGTATGTTTCATAAAGCGTGTGCGTTTCTTCTAAAGCTTTCCTTAGTTTCTAGAATATGTATGCATATTTATGTTTTTTTCGGATGAGATATAAGTATAATGGGAGCATTTGCCATTCCATCTGAATAGTTACTCCTAAGGGGTTATTTGGTTGGATGTTTTGTTTAAGATGCTATGTATGAGAATAGAATGTCGGGGAATCTGATAACTGTGTTTGATGTTAAATGAGAATGATATTAGAATTTCATATAAATAGATCATATTATTGTTTGGTTCCCACAATTACTTCTAGCAGTCTTATTACATTAGTTAATTTTAGATAATAAACGGTGGTTAGTTTATGTTTTCGAGTTAATTTAGCAACCAATCTTAATAATTATTTTCAAATAAATGAATTTAATATAGTTTTATAAACTTTTAATGGTGAATAATTCGTACAATAATTGAATAAGAAGAAGAGGAGAGTAAAGTTGATTCTTATAGTTTCATGTAAGATTCTTGGCTGCAAGTGAGCATCCCTTTTCTATTCCTTAGTTTCCTCCCTTAATGTTGCCTCCATGCTCTAAATCATTGATCTCAAATTCGTTTTGCAATTTGTAGATTTTTGAAAAGAACCCAACCAAGATTAAGAACTACGGTATTTGGCTGCGGTATCAGAGTCGAACTGGTTATCACAACATGTACAAGGAGTTTCGGGATACGACACTGAACGGGGGTGTTGAACAAATGTATAACGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACTGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACGAAGCAGTTTCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGACCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAACCCAACTTGTTTATGTAATTGTGTTCATCTTTCATTTAATTATTGATATGGGTATAGATTTACTTAGAGAATTAGATGAAATTTCTGCCAAACCATTCTTTTCTGTAGCACAATTATTCCTCTGTTTTGGAGACTGAGATGAGATTCACAATTTTGGTTGGACTGATATAAAGCAAATTTTCTTGCTTGATGTTAG TATAGTGGAAACAAAAAACACAGACGCATTTTGGGCCGGGCCGGTCCAGTACTCGTGCGACCCAAGTGCGAAGCAGATCTGTTTAGGGTTTTACTGAGCGTGGCGCTGTGGAGAGAACCAGCTCAAAGCACGTTGCCGATCTCTCTCAGATTATCGAGTGCAAAATGGTCTCATTCAGGTTTCATCAGTACCAGGTCGTGGGGAGGGCTCTTCCTTCTGAAGCGGATGAGCATCCCAAGATTTATCGGATGAAGCTTTGGGCTACCAACGAGGTCCGGGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTCAAGAAGAGCAATGGTCAAGTTCTTGCCATTAACGAGATTTTTGAAAAGAACCCAACCAAGATTAAGAACTACGGTATTTGGCTGCGGTATCAGAGTCGAACTGGTTATCACAACATGTACAAGGAGTTTCGGGATACGACACTGAACGGGGGTGTTGAACAAATGTATAACGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACTGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACGAAGCAGTTTCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGACCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAACCCAACTTGTTTATGTAATTGTGTTCATCTTTCATTTAATTATTGATATGGGTATAGATTTACTTAGAGAATTAGATGAAATTTCTGCCAAACCATTCTTTTCTGTAGCACAATTATTCCTCTGTTTTGGAGACTGAGATGAGATTCACAATTTTGGTTGGACTGATATAAAGCAAATTTTCTTGCTTGATGTTAG ATGGTCTCATTCAGGTTTCATCAGTACCAGGTCGTGGGGAGGGCTCTTCCTTCTGAAGCGGATGAGCATCCCAAGATTTATCGGATGAAGCTTTGGGCTACCAACGAGGTCCGGGCCAAATCCAAGTTCTGGTACTTTTTGAGGAAGTTGAAGAAAGTCAAGAAGAGCAATGGTCAAGTTCTTGCCATTAACGAGATTTTTGAAAAGAACCCAACCAAGATTAAGAACTACGGTATTTGGCTGCGGTATCAGAGTCGAACTGGTTATCACAACATGTACAAGGAGTTTCGGGATACGACACTGAACGGGGGTGTTGAACAAATGTATAACGAGATGGCTTCTCGCCATAGGGTGAGGTGCCCATGCATCCAAATCATTAAGACAGCAACTGTTCCTGCAAAACTGTGCAAGAGGGAAAGTACGAAGCAGTTTCATGACTCAAAGATCAAATTCCCCTTGGTGTTTAAGAAGGTGAGACCACCCACCAGGAAGCTCAAGACAACATACAAAGCATCTAAACCCAACTTGTTTATGTAA MVSFRFHQYQVVGRALPSEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEFRDTTLNGGVEQMYNEMASRHRVRCPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASKPNLFM Homology
BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q9ATF5 (60S ribosomal protein L18a OS=Castanea sativa OX=21020 GN=RPL18A PE=2 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 1.3e-91 Identity = 161/178 (90.45%), Postives = 171/178 (96.07%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q9LUD4 (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18AC PE=2 SV=1) HSP 1 Score: 334.0 bits (855), Expect = 1.1e-90 Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: P51418 (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18AB PE=1 SV=2) HSP 1 Score: 332.8 bits (852), Expect = 2.4e-90 Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q943F3 (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18A PE=1 SV=1) HSP 1 Score: 326.2 bits (835), Expect = 2.2e-88 Identity = 156/178 (87.64%), Postives = 166/178 (93.26%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy Swiss-Prot
Match: Q8L7K0 (60S ribosomal protein L18a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18AA PE=2 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 4.2e-87 Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: KAE8649787.1 (hypothetical protein Csa_012172 [Cucumis sativus]) HSP 1 Score: 355 bits (910), Expect = 2.38e-123 Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: XP_038898916.1 (60S ribosomal protein L18a [Benincasa hispida]) HSP 1 Score: 355 bits (910), Expect = 2.38e-123 Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: KAB1221347.1 (60S ribosomal protein L18a [Morella rubra]) HSP 1 Score: 353 bits (907), Expect = 6.82e-123 Identity = 170/178 (95.51%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: RDY14285.1 (60S ribosomal protein L18a [Mucuna pruriens]) HSP 1 Score: 352 bits (903), Expect = 2.78e-122 Identity = 170/178 (95.51%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. NCBI nr
Match: XP_031736225.1 (60S ribosomal protein L18a [Cucumis sativus] >KAE8653191.1 hypothetical protein Csa_019606 [Cucumis sativus]) HSP 1 Score: 352 bits (903), Expect = 2.78e-122 Identity = 172/178 (96.63%), Postives = 175/178 (98.31%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A6A1WBI9 (60S ribosomal protein L18a OS=Morella rubra OX=262757 GN=CJ030_MR2G005412 PE=3 SV=1) HSP 1 Score: 353 bits (907), Expect = 3.30e-123 Identity = 170/178 (95.51%), Postives = 178/178 (100.00%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A371IH36 (60S ribosomal protein L18a OS=Mucuna pruriens OX=157652 GN=RPL18A PE=3 SV=1) HSP 1 Score: 352 bits (903), Expect = 1.34e-122 Identity = 170/178 (95.51%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A4D6NT19 (60S ribosomal protein L18a OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3825 PE=3 SV=1) HSP 1 Score: 352 bits (903), Expect = 1.34e-122 Identity = 169/178 (94.94%), Postives = 177/178 (99.44%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A5A7UDW7 (60S ribosomal protein L18a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold504G00440 PE=3 SV=1) HSP 1 Score: 352 bits (902), Expect = 1.91e-122 Identity = 170/178 (95.51%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. ExPASy TrEMBL
Match: A0A6J1KGM6 (60S ribosomal protein L18a OS=Cucurbita maxima OX=3661 GN=LOC111495598 PE=3 SV=1) HSP 1 Score: 352 bits (902), Expect = 1.91e-122 Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT3G14600.1 (Ribosomal protein L18ae/LX family protein ) HSP 1 Score: 334.0 bits (855), Expect = 7.6e-92 Identity = 161/178 (90.45%), Postives = 168/178 (94.38%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT2G34480.1 (Ribosomal protein L18ae/LX family protein ) HSP 1 Score: 332.8 bits (852), Expect = 1.7e-91 Identity = 160/178 (89.89%), Postives = 170/178 (95.51%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT1G29965.1 (Ribosomal protein L18ae/LX family protein ) HSP 1 Score: 322.0 bits (824), Expect = 3.0e-88 Identity = 155/178 (87.08%), Postives = 165/178 (92.70%), Query Frame = 0
BLAST of Cp4.1LG02g02540 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 ) HSP 1 Score: 320.5 bits (820), Expect = 8.7e-88 Identity = 154/176 (87.50%), Postives = 164/176 (93.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|