Cp4.1LG02g02270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG02g02270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG02: 3995483 .. 3996862 (+)
RNA-Seq ExpressionCp4.1LG02g02270
SyntenyCp4.1LG02g02270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACCCACAAATTGATTTCACCCTTTCGTCTGTGTTCCCTTCTTCGTCTCCAAAAGGATCCTAAACTCGCTTTTCAACTCTTCCTGAACCCTAATCCCAGCTCTACAAAACCCCCCAAACCCTTCCGTTACTCTTTACTTTCCTATGATCTTATCATCACCAAGCTCGGGCGTGCCAAAATGTTCGATGAAATGGAAGAAATCCTCCATCAGCTCAAGCAAGAGACTCGGTTTGCTCCTAACGAGATTATCTTCTGTAATGTCATTTCGTTCTATGGTCGAGCCCGCCTCCTTGACCGTGCCTTTCAAGTGTTTGATAAAATTCCATCCTATGGTTGCAAGCGGACGGTGAAATCAGCGAATTCGTTGTTGGATGCGTTGTTGAAGTGCAGGGAGTTTGAGAAAATGGCGGAAGTTTTTGTGAGCATTGGTAACTATGGCTCCCCTGATGCTTGTACTTTTAACATTTTGATTCATGCTGCTTGTTTGTGTGGGGATTTGGATGATGCATGGGAGGTGTTTGATGAAATGCCAAAGAGAGGTGTGAAGCCGAATGTGGTCACTTTTGGAACTTTGATTTATGGACTTTCTCTGAATTCTAAGTTGGATGAAGCATTAAGGTTGAAAGAGGATATGGTGAGAGTCTATGGGATTTTGCCGAATGCGTCGATATATGCTACATTGATCAAAGGGTTCTGTGGGATTGGAGATTTGAATTTGGCTTTCAAGCTAAAAGAGGAGATGGTGACTAACAAGGTAAAACTGGACTCGGCAATTTATTCTACTTTCATCAGTGCACTCTTCAAACATGGTAGGAAAGAAGAAGTTCCTGAGATTTTAGCAGAAATGGGAGAGAACGGGTGCAAACCCGACACGGTCACCTACAATGCCATGATCAATGGGCAATGTAAAGAGAACGATCTTGAATCTGCATATAAAGTTTTGGATGAGATGGTGAAGAAGGGGTGTAAGCCAGATGTGATCAGTTTCAATACAATCATGGGGAGATTATGCAAGGAGGGGAAATGGGATAAGGCTATGGACTTGCTTGCAGATATGCCAAGACGAGGTTGCTCTCCTGATGTGGTATCATACAGGACTCTTTTTGATGGGCTGTGTGAAATGATGCAGTTACAGGAAGCAACTTCGATACTGGACGAGATGATCTTCAAGGGCTACGTGCCTCGTTCCGAGAGCATAAACAAACTCATTGACAGGTTGTGCCAGGAATCCAACATGGAGCTGTTGTGGATGGTTTTAAACAGTCTAGGAAGAGGAAATGTCATGAACGTAGATATATGGGCAAGAGTTGTGGCATTTGTTTGCAAGGTGAAGGCATCAGAAGCCTCCAAGTTATGTGATTTATTGATTAGTTGA

mRNA sequence

ATGAAGACCCACAAATTGATTTCACCCTTTCGTCTGTGTTCCCTTCTTCGTCTCCAAAAGGATCCTAAACTCGCTTTTCAACTCTTCCTGAACCCTAATCCCAGCTCTACAAAACCCCCCAAACCCTTCCGTTACTCTTTACTTTCCTATGATCTTATCATCACCAAGCTCGGGCGTGCCAAAATGTTCGATGAAATGGAAGAAATCCTCCATCAGCTCAAGCAAGAGACTCGGTTTGCTCCTAACGAGATTATCTTCTGTAATGTCATTTCGTTCTATGGTCGAGCCCGCCTCCTTGACCGTGCCTTTCAAGTGTTTGATAAAATTCCATCCTATGGTTGCAAGCGGACGGTGAAATCAGCGAATTCGTTGTTGGATGCGTTGTTGAAGTGCAGGGAGTTTGAGAAAATGGCGGAAGTTTTTGTGAGCATTGGTAACTATGGCTCCCCTGATGCTTGTACTTTTAACATTTTGATTCATGCTGCTTGTTTGTGTGGGGATTTGGATGATGCATGGGAGGTGTTTGATGAAATGCCAAAGAGAGGTGTGAAGCCGAATGTGGTCACTTTTGGAACTTTGATTTATGGACTTTCTCTGAATTCTAAGTTGGATGAAGCATTAAGGTTGAAAGAGGATATGGTGAGAGTCTATGGGATTTTGCCGAATGCGTCGATATATGCTACATTGATCAAAGGGTTCTGTGGGATTGGAGATTTGAATTTGGCTTTCAAGCTAAAAGAGGAGATGGTGACTAACAAGGTAAAACTGGACTCGGCAATTTATTCTACTTTCATCAGTGCACTCTTCAAACATGGTAGGAAAGAAGAAGTTCCTGAGATTTTAGCAGAAATGGGAGAGAACGGGTGCAAACCCGACACGGTCACCTACAATGCCATGATCAATGGGCAATGTAAAGAGAACGATCTTGAATCTGCATATAAAGTTTTGGATGAGATGGTGAAGAAGGGGTGTAAGCCAGATGTGATCAGTTTCAATACAATCATGGGGAGATTATGCAAGGAGGGGAAATGGGATAAGGCTATGGACTTGCTTGCAGATATGCCAAGACGAGGTTGCTCTCCTGATGTGGTATCATACAGGACTCTTTTTGATGGGCTGTGTGAAATGATGCAGTTACAGGAAGCAACTTCGATACTGGACGAGATGATCTTCAAGGGCTACGTGCCTCGTTCCGAGAGCATAAACAAACTCATTGACAGGTTGTGCCAGGAATCCAACATGGAGCTGTTGTGGATGGTTTTAAACAGTCTAGGAAGAGGAAATGTCATGAACGTAGATATATGGGCAAGAGTTGTGGCATTTGTTTGCAAGGTGAAGGCATCAGAAGCCTCCAAGTTATGTGATTTATTGATTAGTTGA

Coding sequence (CDS)

ATGAAGACCCACAAATTGATTTCACCCTTTCGTCTGTGTTCCCTTCTTCGTCTCCAAAAGGATCCTAAACTCGCTTTTCAACTCTTCCTGAACCCTAATCCCAGCTCTACAAAACCCCCCAAACCCTTCCGTTACTCTTTACTTTCCTATGATCTTATCATCACCAAGCTCGGGCGTGCCAAAATGTTCGATGAAATGGAAGAAATCCTCCATCAGCTCAAGCAAGAGACTCGGTTTGCTCCTAACGAGATTATCTTCTGTAATGTCATTTCGTTCTATGGTCGAGCCCGCCTCCTTGACCGTGCCTTTCAAGTGTTTGATAAAATTCCATCCTATGGTTGCAAGCGGACGGTGAAATCAGCGAATTCGTTGTTGGATGCGTTGTTGAAGTGCAGGGAGTTTGAGAAAATGGCGGAAGTTTTTGTGAGCATTGGTAACTATGGCTCCCCTGATGCTTGTACTTTTAACATTTTGATTCATGCTGCTTGTTTGTGTGGGGATTTGGATGATGCATGGGAGGTGTTTGATGAAATGCCAAAGAGAGGTGTGAAGCCGAATGTGGTCACTTTTGGAACTTTGATTTATGGACTTTCTCTGAATTCTAAGTTGGATGAAGCATTAAGGTTGAAAGAGGATATGGTGAGAGTCTATGGGATTTTGCCGAATGCGTCGATATATGCTACATTGATCAAAGGGTTCTGTGGGATTGGAGATTTGAATTTGGCTTTCAAGCTAAAAGAGGAGATGGTGACTAACAAGGTAAAACTGGACTCGGCAATTTATTCTACTTTCATCAGTGCACTCTTCAAACATGGTAGGAAAGAAGAAGTTCCTGAGATTTTAGCAGAAATGGGAGAGAACGGGTGCAAACCCGACACGGTCACCTACAATGCCATGATCAATGGGCAATGTAAAGAGAACGATCTTGAATCTGCATATAAAGTTTTGGATGAGATGGTGAAGAAGGGGTGTAAGCCAGATGTGATCAGTTTCAATACAATCATGGGGAGATTATGCAAGGAGGGGAAATGGGATAAGGCTATGGACTTGCTTGCAGATATGCCAAGACGAGGTTGCTCTCCTGATGTGGTATCATACAGGACTCTTTTTGATGGGCTGTGTGAAATGATGCAGTTACAGGAAGCAACTTCGATACTGGACGAGATGATCTTCAAGGGCTACGTGCCTCGTTCCGAGAGCATAAACAAACTCATTGACAGGTTGTGCCAGGAATCCAACATGGAGCTGTTGTGGATGGTTTTAAACAGTCTAGGAAGAGGAAATGTCATGAACGTAGATATATGGGCAAGAGTTGTGGCATTTGTTTGCAAGGTGAAGGCATCAGAAGCCTCCAAGTTATGTGATTTATTGATTAGTTGA

Protein sequence

MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRAKMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKSANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMVLNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS
Homology
[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy Swiss-Prot
Match: Q9MAG8 (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 2.0e-149
Identity = 254/444 (57.21%), Postives = 323/444 (72.75%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           M   K +S FRL SLLR + DP  A +LF NP+P ST P +PFRYSLL YD+IITKLG +
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGS 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDE++++L  LK +TR  P EIIFCNVI+F+GR +L  RA  +FD++P Y C+RTVKS
Sbjct: 61  KMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
            NSLL ALLKC E EKM E   SI  +G PDACT+NILIH     G  DDA ++FDEM K
Sbjct: 121 LNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           + VKP  VTFGTLI+GL  +S++ EAL++K DM++VYG+ P   IYA+LIK  C IG+L+
Sbjct: 181 KKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELS 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
            AFKLK+E    K+K+D+AIYST IS+L K GR  EV  IL EM E GCKPDTVTYN +I
Sbjct: 241 FAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NG C END ESA +VLDEMV+KG KPDVIS+N I+G   +  KW++A  L  DMPRRGCS
Sbjct: 301 NGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PD +SYR +FDGLCE +Q +EA  ILDEM+FKGY PR + +   + +LC+   +E+L  V
Sbjct: 361 PDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCK 445
           ++SL RG   + D+W+ ++  +CK
Sbjct: 421 ISSLHRGIAGDADVWSVMIPTMCK 444

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy Swiss-Prot
Match: Q9FFE3 (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-53
Identity = 125/412 (30.34%), Postives = 228/412 (55.34%), Query Frame = 0 

Query: 9   PFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRAKMFDEMEE 68
           P RL S++  Q++  LA Q+FL     + K    F ++  +Y  I+ KL RA+ FD +E 
Sbjct: 49  PKRLVSMITQQQNIDLALQIFL----YAGKSHPGFTHNYDTYHSILFKLSRARAFDPVES 108

Query: 69  ILHQLKQETRFAP---NEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKSANSLL 128
           ++  L+    + P    E +F +++  YG A   + + ++F +IP +G KR+V+S N+LL
Sbjct: 109 LMADLRNS--YPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLL 168

Query: 129 DALLKCREFEKMAEVFV-SIGNYG-SPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGV 188
           + L++ + F+ +  +F  S  ++G +P+  T N+L+ A C   D++ A++V DE+P  G+
Sbjct: 169 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL 228

Query: 189 KPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLNLAF 248
            PN+VT+ T++ G      ++ A R+ E+M+   G  P+A+ Y  L+ G+C +G  + A 
Sbjct: 229 VPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSEAA 288

Query: 249 KLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQ 308
            + ++M  N+++ +   Y   I AL K  +  E   +  EM E    PD+     +I+  
Sbjct: 289 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 348

Query: 309 CKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDV 368
           C+++ ++ A  +  +M+K  C PD    +T++  LCKEG+  +A  L  D   +G  P +
Sbjct: 349 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLF-DEFEKGSIPSL 408

Query: 369 VSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNME 416
           ++Y TL  G+CE  +L EA  + D+M  +   P + + N LI+ L +  N++
Sbjct: 409 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVK 452

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-53
Identity = 113/389 (29.05%), Postives = 200/389 (51.41%), Query Frame = 0 

Query: 43  FRYSLLSYDLIITKLGRAKMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRA 102
           F   +LSY+ ++    R+K      E + +   E++ +PN   +  +I  +  A  +D A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224

Query: 103 FQVFDKIPSYGCKRTVKSANSLLDALLKCREFEKMAEVFVSIGNYG-SPDACTFNILIHA 162
             +FDK+ + GC   V + N+L+D   K R+ +   ++  S+   G  P+  ++N++I+ 
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284

Query: 163 ACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILP 222
            C  G + +   V  EM +RG   + VT+ TLI G        +AL +  +M+R +G+ P
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLTP 344

Query: 223 NASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEIL 282
           +   Y +LI   C  G++N A +  ++M    +  +   Y+T +    + G   E   +L
Sbjct: 345 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 404

Query: 283 AEMGENGCKPDTVTYNAMINGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKE 342
            EM +NG  P  VTYNA+ING C    +E A  VL++M +KG  PDV+S++T++   C+ 
Sbjct: 405 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 464

Query: 343 GKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESI 402
              D+A+ +  +M  +G  PD ++Y +L  G CE  + +EA  + +EM+  G  P   + 
Sbjct: 465 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 524

Query: 403 NKLIDRLCQESNMELLWMVLNSLGRGNVM 431
             LI+  C E ++E    + N +    V+
Sbjct: 525 TALINAYCMEGDLEKALQLHNEMVEKGVL 552

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy Swiss-Prot
Match: Q3E9F0 (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX=3702 GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.1e-52
Identity = 135/462 (29.22%), Postives = 237/462 (51.30%), Query Frame = 0 

Query: 5   KLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRAKMFD 64
           K IS     SL++ ++DP+    +F     +     K F ++  +Y +++  L R K F 
Sbjct: 52  KFISHESAVSLMKRERDPQGVLDIF-----NKASQQKGFNHNNATYSVLLDNLVRHKKFL 111

Query: 65  EMEEILHQLKQET-RFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYG-CKRTVKSAN 124
            ++ ILHQ+K ET RF   E +F N++  + R+ L D+  ++F+ I      K ++ + +
Sbjct: 112 AVDAILHQMKYETCRF--QESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAIS 171

Query: 125 SLLDALLKCREFEKMAEVFV-SIGNYG-SPDACTFNILIHAACLCGDLDDAWEVFDEMPK 184
           + L+ L+   E     ++ + +  N G  P+ C FNIL+   C  GD++ A+ V +EM +
Sbjct: 172 TCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKR 231

Query: 185 RGVK-PNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDL 244
            G+  PN +T+ TL+  L  +S+  EA+ L EDM+   GI P+   +  +I GFC  G++
Sbjct: 232 SGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEV 291

Query: 245 NLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAM 304
             A K+ + M  N    +   YS  ++   K G+ +E  +   E+ + G K DTV Y  +
Sbjct: 292 ERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTL 351

Query: 305 INGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGC 364
           +N  C+  + + A K+L EM    C+ D +++N I+  L  EG+ ++A+ +L      G 
Sbjct: 352 MNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGV 411

Query: 365 SPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMEL-LW 424
             +  SYR + + LC   +L++A   L  M  +G  P   + N+L+ RLC+    E+ + 
Sbjct: 412 HLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVR 471

Query: 425 MVLNSLGRGNVMNVDIWARVVAFVCKV-KASEASKLCDLLIS 460
           +++  L  G +     W  VV  +CK  K     +L D L+S
Sbjct: 472 VLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.6e-52
Identity = 140/453 (30.91%), Postives = 223/453 (49.23%), Query Frame = 0 

Query: 11  RLCSLLRLQKDPKLAFQLFLNPNPSSTKP---PKPFRYSLLSYDLIITKLGRAKMFDEME 70
           +L   LR Q D   A +LF   N +S KP   P+P       Y+ I+ +LGR+  FD+M+
Sbjct: 52  KLLDSLRSQPDDSAALRLF---NLASKKPNFSPEP-----ALYEEILLRLGRSGSFDDMK 111

Query: 71  EILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFD-KIPSYGCKRTVKSANSLLD 130
           +IL  +K  +R       F  +I  Y +  L D    V D  I  +G K      N +L+
Sbjct: 112 KILEDMK-SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLN 171

Query: 131 ALLKCREFEKMAEVFVSIGNYG-SPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKP 190
            L+     + +      +  +G  PD  TFN+LI A C    L  A  + ++MP  G+ P
Sbjct: 172 LLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVP 231

Query: 191 NVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLNLAFKL 250
           +  TF T++ G      LD ALR++E MV       N S+   ++ GFC  G +  A   
Sbjct: 232 DEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV-NVIVHGFCKEGRVEDALNF 291

Query: 251 KEEMVTNKVKL-DSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQC 310
            +EM        D   ++T ++ L K G  +   EI+  M + G  PD  TYN++I+G C
Sbjct: 292 IQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC 351

Query: 311 KENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVV 370
           K  +++ A +VLD+M+ + C P+ +++NT++  LCKE + ++A +L   +  +G  PDV 
Sbjct: 352 KLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC 411

Query: 371 SYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNM-ELLWMVLNS 430
           ++ +L  GLC     + A  + +EM  KG  P   + N LID LC +  + E L M+   
Sbjct: 412 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 471

Query: 431 LGRGNVMNVDIWARVVAFVCKV-KASEASKLCD 456
              G   +V  +  ++   CK  K  EA ++ D
Sbjct: 472 ELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494

[Close]
BLAST of Cp4.1LG02g02270 vs. NCBI nr
Match: XP_023523314.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 929 bits (2402), Expect = 0.0
Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS
Sbjct: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN
Sbjct: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI
Sbjct: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV
Sbjct: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS
Sbjct: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459

[Close]
BLAST of Cp4.1LG02g02270 vs. NCBI nr
Match: XP_022941521.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita moschata])

HSP 1 Score: 909 bits (2349), Expect = 0.0
Identity = 448/459 (97.60%), Postives = 453/459 (98.69%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 19  MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 78

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRFAP+EIIFCNVISFYGRARLLDRAFQVFDKIPS+GCKRTVKS
Sbjct: 79  KMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGCKRTVKS 138

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFEKMAEVFV IGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 139 ANSLLDALLKCREFEKMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 198

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVY ILPNASIYATLIKGFCG GDLN
Sbjct: 199 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFCGSGDLN 258

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVP ILAEMGENGCKPDTVTYNAMI
Sbjct: 259 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPGILAEMGENGCKPDTVTYNAMI 318

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAY+VLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 319 NGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 378

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+DRLCQESNMELLWMV
Sbjct: 379 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNMELLWMV 438

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           +NSL RGNVMNVDIWARVVAFVCK KASEASKLCDLLIS
Sbjct: 439 VNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 477

[Close]
BLAST of Cp4.1LG02g02270 vs. NCBI nr
Match: KAG7037464.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 908 bits (2346), Expect = 0.0
Identity = 447/459 (97.39%), Postives = 452/459 (98.47%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKT KLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 1   MKTQKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRFAP+EIIFCNVISFYGRARLLDRAFQVFDKIPS+GCKRTVKS
Sbjct: 61  KMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGCKRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFEKMAEVFV IGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 121 ANSLLDALLKCREFEKMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RG KPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVY ILPNASIYATLIKGFCGIGDLN
Sbjct: 181 RGAKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFCGIGDLN 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISA FKHGRKEEVPEILAEMGENGCKPDTVTYNAMI
Sbjct: 241 LAFKLKEEMVTNKVKLDSAIYSTFISAFFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAY+VLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 301 NGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+DRLCQESNMELLWMV
Sbjct: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNMELLWMV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           +NSL RGNVMNVDIWARVVAFVCK KASEASKLCDLLIS
Sbjct: 421 VNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 459

[Close]
BLAST of Cp4.1LG02g02270 vs. NCBI nr
Match: KAG6607949.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 907 bits (2343), Expect = 0.0
Identity = 447/459 (97.39%), Postives = 453/459 (98.69%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKT KLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 1   MKTQKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRFAP+EIIFCNVISFYGRARLLDRAFQVFDKIPS+GCKRTVKS
Sbjct: 61  KMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGCKRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFEKMAEVFV IGNYGSPDAC+FNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 121 ANSLLDALLKCREFEKMAEVFVGIGNYGSPDACSFNILIHAACLCGDLDDAWEVFDEMPK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVY ILPNASIYATLIKGFCGIGDLN
Sbjct: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFCGIGDLN 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVP ILAEMGENGCKPDTVTYNAMI
Sbjct: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPGILAEMGENGCKPDTVTYNAMI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAY+VLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 301 NGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+DRLCQESNMELLWMV
Sbjct: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNMELLWMV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           +NSL RGNVMNVDIWARVVAFVCK KASEASKLCDLLIS
Sbjct: 421 VNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 459

[Close]
BLAST of Cp4.1LG02g02270 vs. NCBI nr
Match: XP_022982178.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita maxima])

HSP 1 Score: 904 bits (2335), Expect = 0.0
Identity = 446/459 (97.17%), Postives = 451/459 (98.26%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNP+STKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPNSTKPPKPFRYSLLSYDLIITKLGRA 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRF+P+EIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS
Sbjct: 61  KMFDEMEEILHQLKQETRFSPHEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFE+MAEVFV IGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 121 ANSLLDALLKCREFERMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVY ILPNASIYATLIKGFCGIGDLN
Sbjct: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFCGIGDLN 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYN MI
Sbjct: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNTMI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAY+VLDEMVKKGCKPDVISFNTIM RLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 301 NGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMERLCKEGKWDKAMDLLADMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV
Sbjct: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
            NSLGRGNVMNVDIWARVVAFVCK K SEASKL DLLIS
Sbjct: 421 ANSLGRGNVMNVDIWARVVAFVCKEKPSEASKLVDLLIS 459

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy TrEMBL
Match: A0A6J1FLC2 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita moschata OX=3662 GN=LOC111446799 PE=4 SV=1)

HSP 1 Score: 909 bits (2349), Expect = 0.0
Identity = 448/459 (97.60%), Postives = 453/459 (98.69%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 19  MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 78

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRFAP+EIIFCNVISFYGRARLLDRAFQVFDKIPS+GCKRTVKS
Sbjct: 79  KMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGCKRTVKS 138

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFEKMAEVFV IGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 139 ANSLLDALLKCREFEKMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 198

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVY ILPNASIYATLIKGFCG GDLN
Sbjct: 199 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFCGSGDLN 258

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVP ILAEMGENGCKPDTVTYNAMI
Sbjct: 259 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPGILAEMGENGCKPDTVTYNAMI 318

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAY+VLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 319 NGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 378

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+DRLCQESNMELLWMV
Sbjct: 379 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNMELLWMV 438

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           +NSL RGNVMNVDIWARVVAFVCK KASEASKLCDLLIS
Sbjct: 439 VNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 477

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy TrEMBL
Match: A0A6J1J467 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxima OX=3661 GN=LOC111481084 PE=4 SV=1)

HSP 1 Score: 904 bits (2335), Expect = 0.0
Identity = 446/459 (97.17%), Postives = 451/459 (98.26%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNP+STKPPKPFRYSLLSYDLIITKLGRA
Sbjct: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPNSTKPPKPFRYSLLSYDLIITKLGRA 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEILHQLKQETRF+P+EIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS
Sbjct: 61  KMFDEMEEILHQLKQETRFSPHEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFE+MAEVFV IGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK
Sbjct: 121 ANSLLDALLKCREFERMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVY ILPNASIYATLIKGFCGIGDLN
Sbjct: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFCGIGDLN 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYN MI
Sbjct: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNTMI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NGQCKENDLESAY+VLDEMVKKGCKPDVISFNTIM RLCKEGKWDKAMDLLADMPRRGCS
Sbjct: 301 NGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMERLCKEGKWDKAMDLLADMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV
Sbjct: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
            NSLGRGNVMNVDIWARVVAFVCK K SEASKL DLLIS
Sbjct: 421 ANSLGRGNVMNVDIWARVVAFVCKEKPSEASKLVDLLIS 459

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy TrEMBL
Match: A0A6J1BRW9 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica charantia OX=3673 GN=LOC111004838 PE=4 SV=1)

HSP 1 Score: 794 bits (2051), Expect = 3.75e-288
Identity = 388/459 (84.53%), Postives = 426/459 (92.81%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKTHK ISPFRLCSLLRLQKDPK+AFQ F +PNPS+ KPPKPFRYSLLSYDLII+KLGRA
Sbjct: 1   MKTHKPISPFRLCSLLRLQKDPKIAFQHFQSPNPSAAKPPKPFRYSLLSYDLIISKLGRA 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           K+FDEME++L QLKQETRFAP+EIIFCNVISFYGRARL DRAFQVF++IPS+GC RTVKS
Sbjct: 61  KLFDEMEQVLLQLKQETRFAPSEIIFCNVISFYGRARLPDRAFQVFERIPSFGCNRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
           ANSLLDALLKCREFEKMAEVFV IG+YGSPDACTFNILIHAA LCG+ DDAWEVFDEM K
Sbjct: 121 ANSLLDALLKCREFEKMAEVFVGIGSYGSPDACTFNILIHAAYLCGNSDDAWEVFDEMRK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RG+ PNVVTFGTLIYGLSLNSKL EAL+LKEDMVRV GILPNASIYATLIKGFCGIG+L 
Sbjct: 181 RGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFCGIGELI 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
           LAF+LKEEMVT+KVK+DSAIYST ISALFKHGRKEEV +IL EM ENGCKPDTVTYNAMI
Sbjct: 241 LAFELKEEMVTSKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTVTYNAMI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           +G CKENDLESA++VLDEMV+KGCKPDVISFN+I+G LCK+GKW++A+DLL DMPRRGCS
Sbjct: 301 SGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAIDLLEDMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKL+D LCQE ++ELLWMV
Sbjct: 361 PDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDVELLWMV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           L+SLGRGN MN+D WARV+A VCK   SEASKL D L+S
Sbjct: 421 LDSLGRGNAMNMDTWARVIALVCKENMSEASKLVDSLVS 459

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy TrEMBL
Match: A0A5A7VBA5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004190 PE=4 SV=1)

HSP 1 Score: 778 bits (2008), Expect = 2.61e-281
Identity = 385/459 (83.88%), Postives = 414/459 (90.20%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKT K ISPFRL SLLRL+KDPKLA QLFLNPNPSS++PPKPFRYSLLSYDLII+KLGRA
Sbjct: 19  MKTQKPISPFRLSSLLRLEKDPKLALQLFLNPNPSSSEPPKPFRYSLLSYDLIISKLGRA 78

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEIL QLKQETRFAP+E+IFCNVI+FYGRARL DRAFQVF++IP++ CKRTVKS
Sbjct: 79  KMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRARLPDRAFQVFERIPTFRCKRTVKS 138

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
            NSLLDALLK REF KM EV V IGN+GSPDACTFNILIHAACLCGDLD  W VFDEM K
Sbjct: 139 VNSLLDALLKSREFGKMMEVLVGIGNHGSPDACTFNILIHAACLCGDLDAVWGVFDEMRK 198

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGV+PNVVTFGTLIYGLSLNSKL EALRLKEDMVRVY I PNASIY TLIKGFCG+G+LN
Sbjct: 199 RGVQPNVVTFGTLIYGLSLNSKLKEALRLKEDMVRVYMIKPNASIYTTLIKGFCGVGELN 258

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
            AFKLKEEMVT+KVKLDS IYST ISALFKHGRKEEV +IL EMGENGCKPDT TYNAMI
Sbjct: 259 FAFKLKEEMVTSKVKLDSKIYSTLISALFKHGRKEEVSDILREMGENGCKPDTATYNAMI 318

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NG CKENDLESA +V+DEMV+KGCKPDVISFNTI+G LCKEGK DKAMDLL DMPRRGC 
Sbjct: 319 NGHCKENDLESANRVVDEMVEKGCKPDVISFNTIIGGLCKEGKLDKAMDLLEDMPRRGCP 378

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDV+SYR +FDGLCEMMQL+EATSILDEMIFKGYVPR+ESINKL+DRLCQE NMELLWMV
Sbjct: 379 PDVLSYRIVFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMV 438

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           LNSLGRGN MN+D WARVVAF+ K    E+S L D LIS
Sbjct: 439 LNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 477

[Close]
BLAST of Cp4.1LG02g02270 vs. ExPASy TrEMBL
Match: A0A1S3BT71 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo OX=3656 GN=LOC103493464 PE=4 SV=1)

HSP 1 Score: 778 bits (2008), Expect = 1.55e-280
Identity = 385/459 (83.88%), Postives = 414/459 (90.20%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           MKT K ISPFRL SLLRL+KDPKLA QLFLNPNPSS++PPKPFRYSLLSYDLII+KLGRA
Sbjct: 67  MKTQKPISPFRLSSLLRLEKDPKLALQLFLNPNPSSSEPPKPFRYSLLSYDLIISKLGRA 126

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDEMEEIL QLKQETRFAP+E+IFCNVI+FYGRARL DRAFQVF++IP++ CKRTVKS
Sbjct: 127 KMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRARLPDRAFQVFERIPTFRCKRTVKS 186

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
            NSLLDALLK REF KM EV V IGN+GSPDACTFNILIHAACLCGDLD  W VFDEM K
Sbjct: 187 VNSLLDALLKSREFGKMMEVLVGIGNHGSPDACTFNILIHAACLCGDLDAVWGVFDEMRK 246

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           RGV+PNVVTFGTLIYGLSLNSKL EALRLKEDMVRVY I PNASIY TLIKGFCG+G+LN
Sbjct: 247 RGVQPNVVTFGTLIYGLSLNSKLKEALRLKEDMVRVYMIKPNASIYTTLIKGFCGVGELN 306

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
            AFKLKEEMVT+KVKLDS IYST ISALFKHGRKEEV +IL EMGENGCKPDT TYNAMI
Sbjct: 307 FAFKLKEEMVTSKVKLDSKIYSTLISALFKHGRKEEVSDILREMGENGCKPDTATYNAMI 366

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NG CKENDLESA +V+DEMV+KGCKPDVISFNTI+G LCKEGK DKAMDLL DMPRRGC 
Sbjct: 367 NGHCKENDLESANRVVDEMVEKGCKPDVISFNTIIGGLCKEGKLDKAMDLLEDMPRRGCP 426

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PDV+SYR +FDGLCEMMQL+EATSILDEMIFKGYVPR+ESINKL+DRLCQE NMELLWMV
Sbjct: 427 PDVLSYRIVFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNMELLWMV 486

Query: 421 LNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459
           LNSLGRGN MN+D WARVVAF+ K    E+S L D LIS
Sbjct: 487 LNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 525

[Close]
BLAST of Cp4.1LG02g02270 vs. TAIR 10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 530.4 bits (1365), Expect = 1.4e-150
Identity = 254/444 (57.21%), Postives = 323/444 (72.75%), Query Frame = 0 

Query: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRA 60
           M   K +S FRL SLLR + DP  A +LF NP+P ST P +PFRYSLL YD+IITKLG +
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGS 60

Query: 61  KMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKS 120
           KMFDE++++L  LK +TR  P EIIFCNVI+F+GR +L  RA  +FD++P Y C+RTVKS
Sbjct: 61  KMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQRTVKS 120

Query: 121 ANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEVFDEMPK 180
            NSLL ALLKC E EKM E   SI  +G PDACT+NILIH     G  DDA ++FDEM K
Sbjct: 121 LNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEMVK 180

Query: 181 RGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLN 240
           + VKP  VTFGTLI+GL  +S++ EAL++K DM++VYG+ P   IYA+LIK  C IG+L+
Sbjct: 181 KKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELS 240

Query: 241 LAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMI 300
            AFKLK+E    K+K+D+AIYST IS+L K GR  EV  IL EM E GCKPDTVTYN +I
Sbjct: 241 FAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLI 300

Query: 301 NGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCS 360
           NG C END ESA +VLDEMV+KG KPDVIS+N I+G   +  KW++A  L  DMPRRGCS
Sbjct: 301 NGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCS 360

Query: 361 PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMELLWMV 420
           PD +SYR +FDGLCE +Q +EA  ILDEM+FKGY PR + +   + +LC+   +E+L  V
Sbjct: 361 PDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKV 420

Query: 421 LNSLGRGNVMNVDIWARVVAFVCK 445
           ++SL RG   + D+W+ ++  +CK
Sbjct: 421 ISSLHRGIAGDADVWSVMIPTMCK 444

[Close]
BLAST of Cp4.1LG02g02270 vs. TAIR 10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 211.8 bits (538), Expect = 1.1e-54
Identity = 125/412 (30.34%), Postives = 228/412 (55.34%), Query Frame = 0 

Query: 9   PFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRAKMFDEMEE 68
           P RL S++  Q++  LA Q+FL     + K    F ++  +Y  I+ KL RA+ FD +E 
Sbjct: 49  PKRLVSMITQQQNIDLALQIFL----YAGKSHPGFTHNYDTYHSILFKLSRARAFDPVES 108

Query: 69  ILHQLKQETRFAP---NEIIFCNVISFYGRARLLDRAFQVFDKIPSYGCKRTVKSANSLL 128
           ++  L+    + P    E +F +++  YG A   + + ++F +IP +G KR+V+S N+LL
Sbjct: 109 LMADLRNS--YPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLL 168

Query: 129 DALLKCREFEKMAEVFV-SIGNYG-SPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGV 188
           + L++ + F+ +  +F  S  ++G +P+  T N+L+ A C   D++ A++V DE+P  G+
Sbjct: 169 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL 228

Query: 189 KPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLNLAF 248
            PN+VT+ T++ G      ++ A R+ E+M+   G  P+A+ Y  L+ G+C +G  + A 
Sbjct: 229 VPNLVTYTTILGGYVARGDMESAKRVLEEMLD-RGWYPDATTYTVLMDGYCKLGRFSEAA 288

Query: 249 KLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQ 308
            + ++M  N+++ +   Y   I AL K  +  E   +  EM E    PD+     +I+  
Sbjct: 289 TVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDAL 348

Query: 309 CKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDV 368
           C+++ ++ A  +  +M+K  C PD    +T++  LCKEG+  +A  L  D   +G  P +
Sbjct: 349 CEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLF-DEFEKGSIPSL 408

Query: 369 VSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNME 416
           ++Y TL  G+CE  +L EA  + D+M  +   P + + N LI+ L +  N++
Sbjct: 409 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVK 452

[Close]
BLAST of Cp4.1LG02g02270 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 211.1 bits (536), Expect = 1.9e-54
Identity = 113/389 (29.05%), Postives = 200/389 (51.41%), Query Frame = 0 

Query: 43  FRYSLLSYDLIITKLGRAKMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRA 102
           F   +LSY+ ++    R+K      E + +   E++ +PN   +  +I  +  A  +D A
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224

Query: 103 FQVFDKIPSYGCKRTVKSANSLLDALLKCREFEKMAEVFVSIGNYG-SPDACTFNILIHA 162
             +FDK+ + GC   V + N+L+D   K R+ +   ++  S+   G  P+  ++N++I+ 
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284

Query: 163 ACLCGDLDDAWEVFDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILP 222
            C  G + +   V  EM +RG   + VT+ TLI G        +AL +  +M+R +G+ P
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLTP 344

Query: 223 NASIYATLIKGFCGIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEIL 282
           +   Y +LI   C  G++N A +  ++M    +  +   Y+T +    + G   E   +L
Sbjct: 345 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 404

Query: 283 AEMGENGCKPDTVTYNAMINGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKE 342
            EM +NG  P  VTYNA+ING C    +E A  VL++M +KG  PDV+S++T++   C+ 
Sbjct: 405 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 464

Query: 343 GKWDKAMDLLADMPRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESI 402
              D+A+ +  +M  +G  PD ++Y +L  G CE  + +EA  + +EM+  G  P   + 
Sbjct: 465 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 524

Query: 403 NKLIDRLCQESNMELLWMVLNSLGRGNVM 431
             LI+  C E ++E    + N +    V+
Sbjct: 525 TALINAYCMEGDLEKALQLHNEMVEKGVL 552

[Close]
BLAST of Cp4.1LG02g02270 vs. TAIR 10
Match: AT5G18475.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 206.8 bits (525), Expect = 3.6e-53
Identity = 135/462 (29.22%), Postives = 237/462 (51.30%), Query Frame = 0 

Query: 5   KLISPFRLCSLLRLQKDPKLAFQLFLNPNPSSTKPPKPFRYSLLSYDLIITKLGRAKMFD 64
           K IS     SL++ ++DP+    +F     +     K F ++  +Y +++  L R K F 
Sbjct: 52  KFISHESAVSLMKRERDPQGVLDIF-----NKASQQKGFNHNNATYSVLLDNLVRHKKFL 111

Query: 65  EMEEILHQLKQET-RFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYG-CKRTVKSAN 124
            ++ ILHQ+K ET RF   E +F N++  + R+ L D+  ++F+ I      K ++ + +
Sbjct: 112 AVDAILHQMKYETCRF--QESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAIS 171

Query: 125 SLLDALLKCREFEKMAEVFV-SIGNYG-SPDACTFNILIHAACLCGDLDDAWEVFDEMPK 184
           + L+ L+   E     ++ + +  N G  P+ C FNIL+   C  GD++ A+ V +EM +
Sbjct: 172 TCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKR 231

Query: 185 RGVK-PNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDL 244
            G+  PN +T+ TL+  L  +S+  EA+ L EDM+   GI P+   +  +I GFC  G++
Sbjct: 232 SGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEV 291

Query: 245 NLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAM 304
             A K+ + M  N    +   YS  ++   K G+ +E  +   E+ + G K DTV Y  +
Sbjct: 292 ERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTL 351

Query: 305 INGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGC 364
           +N  C+  + + A K+L EM    C+ D +++N I+  L  EG+ ++A+ +L      G 
Sbjct: 352 MNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGV 411

Query: 365 SPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNMEL-LW 424
             +  SYR + + LC   +L++A   L  M  +G  P   + N+L+ RLC+    E+ + 
Sbjct: 412 HLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVR 471

Query: 425 MVLNSLGRGNVMNVDIWARVVAFVCKV-KASEASKLCDLLIS 460
           +++  L  G +     W  VV  +CK  K     +L D L+S
Sbjct: 472 VLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506

[Close]
BLAST of Cp4.1LG02g02270 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 4.7e-53
Identity = 140/453 (30.91%), Postives = 223/453 (49.23%), Query Frame = 0 

Query: 11  RLCSLLRLQKDPKLAFQLFLNPNPSSTKP---PKPFRYSLLSYDLIITKLGRAKMFDEME 70
           +L   LR Q D   A +LF   N +S KP   P+P       Y+ I+ +LGR+  FD+M+
Sbjct: 52  KLLDSLRSQPDDSAALRLF---NLASKKPNFSPEP-----ALYEEILLRLGRSGSFDDMK 111

Query: 71  EILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFD-KIPSYGCKRTVKSANSLLD 130
           +IL  +K  +R       F  +I  Y +  L D    V D  I  +G K      N +L+
Sbjct: 112 KILEDMK-SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLN 171

Query: 131 ALLKCREFEKMAEVFVSIGNYG-SPDACTFNILIHAACLCGDLDDAWEVFDEMPKRGVKP 190
            L+     + +      +  +G  PD  TFN+LI A C    L  A  + ++MP  G+ P
Sbjct: 172 LLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVP 231

Query: 191 NVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFCGIGDLNLAFKL 250
           +  TF T++ G      LD ALR++E MV       N S+   ++ GFC  G +  A   
Sbjct: 232 DEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV-NVIVHGFCKEGRVEDALNF 291

Query: 251 KEEMVTNKVKL-DSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTVTYNAMINGQC 310
            +EM        D   ++T ++ L K G  +   EI+  M + G  PD  TYN++I+G C
Sbjct: 292 IQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC 351

Query: 311 KENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADMPRRGCSPDVV 370
           K  +++ A +VLD+M+ + C P+ +++NT++  LCKE + ++A +L   +  +G  PDV 
Sbjct: 352 KLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC 411

Query: 371 SYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNM-ELLWMVLNS 430
           ++ +L  GLC     + A  + +EM  KG  P   + N LID LC +  + E L M+   
Sbjct: 412 TFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 471

Query: 431 LGRGNVMNVDIWARVVAFVCKV-KASEASKLCD 456
              G   +V  +  ++   CK  K  EA ++ D
Sbjct: 472 ELSGCARSVITYNTLIDGFCKANKTREAEEIFD 494

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g02270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9MAG82.0e-14957.21Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th... [more]
Q9FFE31.6e-5330.34Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
Q9FIX32.7e-5329.05Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX... [more]
Q3E9F05.1e-5229.22Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX... [more]
Q9LFF16.6e-5230.91Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG02g02270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023523314.10.0100.00putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo s... [more]
XP_022941521.10.097.60LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53... [more]
KAG7037464.10.097.39putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
KAG6607949.10.097.39putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
XP_022982178.10.097.17putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita maxima... [more]
BLAST of Cp4.1LG02g02270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FLC20.097.60LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53... [more]
A0A6J1J4670.097.17putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxi... [more]
A0A6J1BRW93.75e-28884.53putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica char... [more]
A0A5A7VBA52.61e-28183.88Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A1S3BT711.55e-28083.88putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo O... [more]
BLAST of Cp4.1LG02g02270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G53330.11.4e-15057.21Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G16420.11.1e-5430.34Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT5G39710.11.9e-5429.05Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G18475.13.6e-5329.22Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G53700.14.7e-5330.91Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 85..114
e-value: 0.022
score: 15.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 294..328
e-value: 7.4E-12
score: 42.7
coord: 329..363
e-value: 1.9E-10
score: 38.3
coord: 153..187
e-value: 1.2E-10
score: 38.8
coord: 225..257
e-value: 4.3E-5
score: 21.4
coord: 260..293
e-value: 7.4E-7
score: 27.0
coord: 188..223
e-value: 9.5E-5
score: 20.3
coord: 85..117
e-value: 4.2E-4
score: 18.3
coord: 364..396
e-value: 6.8E-5
score: 20.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 326..374
e-value: 2.5E-18
score: 66.0
coord: 150..197
e-value: 7.4E-16
score: 58.1
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 287..320
e-value: 1.8E-14
score: 53.2
coord: 218..250
e-value: 6.4E-8
score: 32.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 151..185
score: 13.877064
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 362..396
score: 11.103854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 327..361
score: 13.328999
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 11.224429
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 222..256
score: 9.646002
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 8.747175
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 186..221
score: 8.604678
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 14.348399
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 237..339
e-value: 1.2E-30
score: 109.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 340..454
e-value: 1.4E-19
score: 72.1
coord: 147..236
e-value: 1.4E-26
score: 95.0
coord: 41..146
e-value: 3.9E-16
score: 60.9
NoneNo IPR availablePANTHERPTHR47933:SF24OS05G0207200 PROTEINcoord: 1..452
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 1..452

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g02270.1Cp4.1LG02g02270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0048364 root development
biological_process GO:0048367 shoot system development
molecular_function GO:0005515 protein binding