Cp4.1LG02g02020 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02020
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cp4.1LG02: 4223462 .. 4224082 (-)
RNA-Seq Expression	Cp4.1LG02g02020
Synteny	Cp4.1LG02g02020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACTAGTAAAGGCAACGACGTTGGAGAAGGATCGTCATCGAGTTCGTCTTCTCTAGTTATCGTTGATGATAACAATCAACAACAGCACCAACAACAACAGCTTGTTCCAGTGAGTCGTTATGAGTCGCAAAAGAGGCGAGACTGGTACACTTTTGGGCAATATTTGAGAAATCAACGCCCTCCCTTGGCAATTTCGCAATGTAATTCAAGTCATGTGTTGGATTTCCTTCGTTATCTCGACCAATTTGGTAAGACAAAAGTTCACTTAAATGGGTGTGGTTTTTTTGGACAACCTGAACCACCGGGACCTTGTACTTGCCCTCTTAAACAAGCTTGGGGTAGTCTTGATGCTCTTATTGGTCGACTTAGAGCTGCTTATGAAGAAAATGGAGGTTCTTCGGAGACTAATCCATTTGCAAGTGGTGCTATAAGAATTTATCTACGAGAAATAAGAGACTCCCAATCAAAAGCAAGAGGAATTCCATATAAGAAGAAGAAAAAGAAGAACCCAACAAAGACTGATGAAGGTAATACCCGATCAATCTCGTTTCTTATTACTGGCAAAACTACTCATCGAACAAGTCCTACGATGAGTATTAGAACATTCGATCTCTAG

mRNA sequence

ATGTCGACTAGTAAAGGCAACGACGTTGGAGAAGGATCGTCATCGAGTTCGTCTTCTCTAGTTATCGTTGATGATAACAATCAACAACAGCACCAACAACAACAGCTTGTTCCAGTGAGTCGTTATGAGTCGCAAAAGAGGCGAGACTGGTACACTTTTGGGCAATATTTGAGAAATCAACGCCCTCCCTTGGCAATTTCGCAATGTAATTCAAGTCATGTGTTGGATTTCCTTCGTTATCTCGACCAATTTGGTAAGACAAAAGTTCACTTAAATGGGTGTGGTTTTTTTGGACAACCTGAACCACCGGGACCTTGTACTTGCCCTCTTAAACAAGCTTGGGGTAGTCTTGATGCTCTTATTGGTCGACTTAGAGCTGCTTATGAAGAAAATGGAGGTTCTTCGGAGACTAATCCATTTGCAAGTGGTGCTATAAGAATTTATCTACGAGAAATAAGAGACTCCCAATCAAAAGCAAGAGGAATTCCATATAAGAAGAAGAAAAAGAAGAACCCAACAAAGACTGATGAAGGTAATACCCGATCAATCTCGTTTCTTATTACTGGCAAAACTACTCATCGAACAAGTCCTACGATGAGTATTAGAACATTCGATCTCTAG

Coding sequence (CDS)

ATGTCGACTAGTAAAGGCAACGACGTTGGAGAAGGATCGTCATCGAGTTCGTCTTCTCTAGTTATCGTTGATGATAACAATCAACAACAGCACCAACAACAACAGCTTGTTCCAGTGAGTCGTTATGAGTCGCAAAAGAGGCGAGACTGGTACACTTTTGGGCAATATTTGAGAAATCAACGCCCTCCCTTGGCAATTTCGCAATGTAATTCAAGTCATGTGTTGGATTTCCTTCGTTATCTCGACCAATTTGGTAAGACAAAAGTTCACTTAAATGGGTGTGGTTTTTTTGGACAACCTGAACCACCGGGACCTTGTACTTGCCCTCTTAAACAAGCTTGGGGTAGTCTTGATGCTCTTATTGGTCGACTTAGAGCTGCTTATGAAGAAAATGGAGGTTCTTCGGAGACTAATCCATTTGCAAGTGGTGCTATAAGAATTTATCTACGAGAAATAAGAGACTCCCAATCAAAAGCAAGAGGAATTCCATATAAGAAGAAGAAAAAGAAGAACCCAACAAAGACTGATGAAGGTAATACCCGATCAATCTCGTTTCTTATTACTGGCAAAACTACTCATCGAACAAGTCCTACGATGAGTATTAGAACATTCGATCTCTAG

Protein sequence

MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEGNTRSISFLITGKTTHRTSPTMSIRTFDL

Homology

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.4e-64
Identity = 112/137 (81.75%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 37  VPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGF 96
           V  SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F
Sbjct: 21  VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMF 80

Query: 97  FGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQ 156
           +GQPEPP PCTCPL+QAWGSLDALIGRLRAAYEENGG  ETNPFASGAIR+YLRE+R+ Q
Sbjct: 81  YGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQ 140

Query: 157 SKARGIPYKKKKKKNPT 174
           +KARGIPYKKKKKK PT
Sbjct: 141 AKARGIPYKKKKKKKPT 157

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-59
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0


Query: 3   TSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVP----VSRYESQKRRDWYTFGQYLR 62
           ++KG  + EGSS   S         Q Q  Q Q  P    +SRYESQKRRDW TF QYLR
Sbjct: 5   SNKGKGIAEGSSQPQS-------QPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLR 64

Query: 63  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLD 122
           NQ+PP+ ISQC S+H+LDFL+YLDQFGKTKVH++GC FFGQ EP G C CPLKQAWGSLD
Sbjct: 65  NQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLD 124

Query: 123 ALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY---KKKKKKNPTKT 179
           ALIGRLRAA+EENGG  E NPFA G IR++LRE+RDSQ+KARG+PY   KK+KK+NP K+
Sbjct: 125 ALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKS 180

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.3e-59
Identity = 101/132 (76.52%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 39  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFG 98
           +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV++FLRYLDQFGKTKVH +GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 99  QPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSK 158
           QP PPGPC CPL+QAWGSLDALIGRLRAAYEE+GG+ E+NPFA+ A+RIYLRE+RDSQ+K
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 159 ARGIPYKKKKKK 171
           ARGIPY+KKK+K
Sbjct: 149 ARGIPYEKKKRK 160

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.3e-59
Identity = 101/132 (76.52%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 39  VSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFG 98
           +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV++FLRYLDQFGKTKVH +GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 99  QPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSK 158
           QP PPGPC CPL+QAWGSLDALIGRLRAAYEE+GG+ E+NPFA+ A+RIYLRE+RDSQ+K
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 159 ARGIPYKKKKKK 171
           ARGIPY+KKK+K
Sbjct: 149 ARGIPYEKKKRK 160

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.8e-58
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 13  SSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSS 72
           +SSSSSS       NQ          +SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +
Sbjct: 30  TSSSSSSSSGGSGTNQ----------LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGA 89

Query: 73  HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENG 132
           HVL+FLRYLDQFGKTKVH + C FFG P PP PC CPL+QAWGSLDALIGRLRAA+EENG
Sbjct: 90  HVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENG 149

Query: 133 GSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNP 173
           GS ETNPF + A+R+YLRE+RDSQ+KARGI Y+KKK+K P
Sbjct: 150 GSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cp4.1LG02g02020 vs. NCBI nr
Match: XP_023524645.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360 bits (923), Expect = 7.99e-125
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178

[Close]

BLAST of Cp4.1LG02g02020 vs. NCBI nr
Match: KAG6607912.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 356 bits (913), Expect = 2.67e-123
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKG DVGEGSSSSSSSLVIVDDNNQQQHQQQQL PVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQHQQQQLAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178

[Close]

BLAST of Cp4.1LG02g02020 vs. NCBI nr
Match: XP_022940383.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 354 bits (909), Expect = 1.09e-122
Identity = 175/178 (98.31%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKG DVGEGSSSSSSSLVIVDDNNQQQHQQQQ  PVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQHQQQQFAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178

[Close]

BLAST of Cp4.1LG02g02020 vs. NCBI nr
Match: KAG7037439.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354 bits (908), Expect = 1.55e-122
Identity = 175/178 (98.31%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKG DVGEGSSSSSSSLVIVDDNNQQQHQQQQL PVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQHQQQQLAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHL+GCGFFGQPEPPGPCTCPLKQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLDGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178

[Close]

BLAST of Cp4.1LG02g02020 vs. NCBI nr
Match: XP_022981128.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 345 bits (886), Expect = 3.75e-119
Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKG DVGEGSSSSSSSLVIVDDNNQQQ QQQQL PVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTD 176
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKT+
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTN 176

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy TrEMBL
Match: A0A6J1FP48 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111446008 PE=3 SV=1)

HSP 1 Score: 354 bits (909), Expect = 5.27e-123
Identity = 175/178 (98.31%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKG DVGEGSSSSSSSLVIVDDNNQQQHQQQQ  PVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQHQQQQFAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTDEG 178

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy TrEMBL
Match: A0A6J1J187 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111480369 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 1.81e-119
Identity = 171/176 (97.16%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQ 60
           MSTSKG DVGEGSSSSSSSLVIVDDNNQQQ QQQQL PVSRYESQKRRDWYTFGQYLRNQ
Sbjct: 1   MSTSKGKDVGEGSSSSSSSLVIVDDNNQQQQQQQQLAPVSRYESQKRRDWYTFGQYLRNQ 60

Query: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDAL 120
           RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSLDAL
Sbjct: 61  RPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTD 176
           IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKT+
Sbjct: 121 IGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTN 176

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy TrEMBL
Match: A0A6J1IH94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111476929 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 2.56e-105
Identity = 155/181 (85.64%), Postives = 167/181 (92.27%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSS----LVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQY 60
           MSTSKGND GEGSSS+SSS    + ++DD NQQQ QQ   VPVSRYESQKRRDWYTFGQY
Sbjct: 38  MSTSKGNDFGEGSSSNSSSSSSFVAVIDDRNQQQ-QQAVAVPVSRYESQKRRDWYTFGQY 97

Query: 61  LRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGS 120
           LRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGS
Sbjct: 98  LRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGS 157

Query: 121 LDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNPTKTD 177
           LDALIGRLRAAYEENGG+S+TNPFASGAIR+YLRE++DSQSKARGIPYKKKKKK P+ T 
Sbjct: 158 LDALIGRLRAAYEENGGTSDTNPFASGAIRVYLRELKDSQSKARGIPYKKKKKKIPSHTH 217

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 303 bits (775), Expect = 4.82e-102
Identity = 153/182 (84.07%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSS----LVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQY 60
           MSTSKGNDVGEGSSS+SSS    + +++D NQ       + PVSRYESQKRRDWYTFGQY
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQPAATA--VAPVSRYESQKRRDWYTFGQY 92

Query: 61  LRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGS 120
           LRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGS
Sbjct: 93  LRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGS 152

Query: 121 LDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKN-PTKT 177
           LDALIGRLRAAYEENGGSS+TNPFASGAIR+YLRE++DSQSKARGIPYKKKKKK  PT T
Sbjct: 153 LDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHT 212

[Close]

BLAST of Cp4.1LG02g02020 vs. ExPASy TrEMBL
Match: A0A0A0L028 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 SV=1)

HSP 1 Score: 292 bits (747), Expect = 5.45e-98
Identity = 150/190 (78.95%), Postives = 162/190 (85.26%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSSSSS-----LVIVDDNNQQQHQQQ------QLVP---------VS 60
           MS+SKG DV EGSSS+SSS     +V+VDD+N  Q QQQ      Q  P         +S
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQP 120
           RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+P
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKAR 170
           EP GPCTCPL+QAWGSLDALIGRLRAAYEENGGSS+TNPFASGAIR+YLRE+RDSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

[Close]

BLAST of Cp4.1LG02g02020 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-65
Identity = 112/137 (81.75%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 37  VPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGF 96
           V  SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F
Sbjct: 21  VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMF 80

Query: 97  FGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQ 156
           +GQPEPP PCTCPL+QAWGSLDALIGRLRAAYEENGG  ETNPFASGAIR+YLRE+R+ Q
Sbjct: 81  YGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQ 140

Query: 157 SKARGIPYKKKKKKNPT 174
           +KARGIPYKKKKKK PT
Sbjct: 141 AKARGIPYKKKKKKKPT 157

[Close]

BLAST of Cp4.1LG02g02020 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.1 bits (627), Expect = 2.4e-65
Identity = 112/137 (81.75%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 37  VPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGF 96
           V  SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVLDFLRYLDQFGKTKVH+ GC F
Sbjct: 21  VTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMF 80

Query: 97  FGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQ 156
           +GQPEPP PCTCPL+QAWGSLDALIGRLRAAYEENGG  ETNPFASGAIR+YLRE+R+ Q
Sbjct: 81  YGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQ 140

Query: 157 SKARGIPYKKKKKKNPT 174
           +KARGIPYKKKKKK PT
Sbjct: 141 AKARGIPYKKKKKKKPT 157

[Close]

BLAST of Cp4.1LG02g02020 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.1 bits (588), Expect = 8.0e-61
Identity = 118/183 (64.48%), Postives = 139/183 (75.96%), Query Frame = 0


Query: 3   TSKGNDVGEGSSSSSSSLVIVDDNNQQQHQQQQLVP----VSRYESQKRRDWYTFGQYLR 62
           ++KG  + EGSS   S         Q Q  Q Q  P    +SRYESQKRRDW TF QYLR
Sbjct: 5   SNKGKGIAEGSSQPQS-------QPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLR 64

Query: 63  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLD 122
           NQ+PP+ ISQC S+H+LDFL+YLDQFGKTKVH++GC FFGQ EP G C CPLKQAWGSLD
Sbjct: 65  NQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLD 124

Query: 123 ALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKARGIPY---KKKKKKNPTKT 179
           ALIGRLRAA+EENGG  E NPFA G IR++LRE+RDSQ+KARG+PY   KK+KK+NP K+
Sbjct: 125 ALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKS 180

[Close]

BLAST of Cp4.1LG02g02020 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 225.7 bits (574), Expect = 3.4e-59
Identity = 109/160 (68.12%), Postives = 128/160 (80.00%), Query Frame = 0


Query: 13  SSSSSSSLVIVDDNNQQQHQQQQLVPVSRYESQKRRDWYTFGQYLRNQRPPLAISQCNSS 72
           +SSSSSS       NQ          +SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +
Sbjct: 30  TSSSSSSSSGGSGTNQ----------LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGA 89

Query: 73  HVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLDALIGRLRAAYEENG 132
           HVL+FLRYLDQFGKTKVH + C FFG P PP PC CPL+QAWGSLDALIGRLRAA+EENG
Sbjct: 90  HVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENG 149

Query: 133 GSSETNPFASGAIRIYLREIRDSQSKARGIPYKKKKKKNP 173
           GS ETNPF + A+R+YLRE+RDSQ+KARGI Y+KKK+K P
Sbjct: 150 GSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Cp4.1LG02g02020 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.6 bits (571), Expect = 7.5e-59
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 40  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQ 99
           SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +HVL+FLRYLDQFGKTKVH N C F+G 
Sbjct: 53  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGH 112

Query: 100 PEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSETNPFASGAIRIYLREIRDSQSKA 159
           P PP PC CPL+QAWGSLDALIGRLRAA+EENGG  ETNPF + A+R+YLRE+RD QSKA
Sbjct: 113 PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKA 172

Query: 160 RGIPYKKKKKKNPTKTDEGNTRS 183
           RG+ Y+KKK+K P  +   ++ S
Sbjct: 173 RGVSYEKKKRKRPLPSSSTSSSS 195

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	3.4e-64	81.75	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	1.1e-59	64.48	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	3.3e-59	76.52	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	3.3e-59	76.52	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9LW68	4.8e-58	68.13	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Cp4.1LG02g02020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524645.1	7.99e-125	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
KAG6607912.1	2.67e-123	98.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022940383.1	1.09e-122	98.31	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
KAG7037439.1	1.55e-122	98.31	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022981128.1	3.75e-119	97.16	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG02g02020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP48	5.27e-123	98.31	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1J187	1.81e-119	97.16	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1IH94	2.56e-105	85.64	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FB04	4.82e-102	84.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0L028	5.45e-98	78.95	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 S...	[more]

BLAST of Cp4.1LG02g02020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	2.4e-65	81.75	Protein of unknown function (DUF640)	[more]
AT2G42610.2	2.4e-65	81.75	Protein of unknown function (DUF640)	[more]
AT1G78815.1	8.0e-61	64.48	Protein of unknown function (DUF640)	[more]
AT3G23290.2	3.4e-59	68.13	Protein of unknown function (DUF640)	[more]
AT2G31160.1	7.5e-59	69.93	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 34..154 e-value: 5.2E-62 score: 207.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 41..168 score: 75.939873
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..182
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 2..178
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 2..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g02020.1	Cp4.1LG02g02020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus