Cp4.1LG02g01840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g01840
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	CLAVATA3/ESR-RELATED 3
Location	Cp4.1LG02: 4272347 .. 4272595 (-)
RNA-Seq Expression	Cp4.1LG02g01840
Synteny	Cp4.1LG02g01840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTCGTGTAAAGCTCTTTGTTTGCCTTGTGGTGATTTTGCTCTTGTGTTCATCCATTGCTGAAAGCCGCTTGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGAGTAAGAAAAATCAGTCATTTGTGAAGAATGTCGAAGAAACATTGAAGTTTATCATTGAAGAGAAGGAGAAGCTTGGAAGACATTTTGTGTCGAAGAGGCTAAGCCCTGGAGGGCCTGATCCACGACATCATTGA

mRNA sequence

ATGGCTTGTCGTGTAAAGCTCTTTGTTTGCCTTGTGGTGATTTTGCTCTTGTGTTCATCCATTGCTGAAAGCCGCTTGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGAGTAAGAAAAATCAGTCATTTGTGAAGAATGTCGAAGAAACATTGAAGTTTATCATTGAAGAGAAGGAGAAGCTTGGAAGACATTTTGTGTCGAAGAGGCTAAGCCCTGGAGGGCCTGATCCACGACATCATTGA

Coding sequence (CDS)

ATGGCTTGTCGTGTAAAGCTCTTTGTTTGCCTTGTGGTGATTTTGCTCTTGTGTTCATCCATTGCTGAAAGCCGCTTGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGAGTAAGAAAAATCAGTCATTTGTGAAGAATGTCGAAGAAACATTGAAGTTTATCATTGAAGAGAAGGAGAAGCTTGGAAGACATTTTGTGTCGAAGAGGCTAAGCCCTGGAGGGCCTGATCCACGACATCATTGA

Protein sequence

MACRVKLFVCLVVILLLCSSIAESRLLSSSSSSSSSSVSKKNQSFVKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH

Homology

[Close]

BLAST of Cp4.1LG02g01840 vs. ExPASy Swiss-Prot
Match: A0A072V9Z0 (CLAVATA3/ESR (CLE)-related protein 33 OS=Medicago truncatula OX=3880 GN=CLE33 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 4  RVKLFVCLVVILLLCSSIAESRLLSSSSSSSSSSVSKKNQSFVKNVEETLKFIIEEKEKL 63
          R+  FV L   +L+C    ++R L SS SSS+ S      +FV++V++ +K I+  K+ L
Sbjct: 5  RMLCFVLLFTSILICH---DARPLPSSLSSSNGS-----PAFVESVKQVVKEIMRRKQLL 64

Query: 64 GRHFVSKRLSPGGPDPRHH 83
          G  + + RLSP GPDP HH
Sbjct: 65 GTQYSTNRLSPSGPDPHHH 75

[Close]

BLAST of Cp4.1LG02g01840 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 1.08e-27
Identity = 66/84 (78.57%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 3  CRVKL--FVCLVVILLLCSSIAESRLLSSSSSSSS--SSVSKKNQSFVKNVEETLKFIIE 62
          C VKL  F  LV+ILLLCSSI+ESRLLSS S S S  SS +KKN+ FVKN EE LKFIIE
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDPRHH 82
          EKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of Cp4.1LG02g01840 vs. NCBI nr
Match: XP_031267366.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 48.1 bits (113), Expect = 9.20e-05
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 46  VKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 82
           ++N +E LK  ++ +E LG+ F SKRLSPGGPDPRHH
Sbjct: 68  MENAKEMLKDGVKRQEILGKFFDSKRLSPGGPDPRHH 104

[Close]

BLAST of Cp4.1LG02g01840 vs. NCBI nr
Match: CAB4297523.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 45.1 bits (105), Expect = 6.95e-04
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 42 NQSFVKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 82
          +Q+ +++ +E LK  IE   ++GRH  SKR SPGGPDPRHH
Sbjct: 31 SQTAMESAKEVLKASIER--QVGRHLESKRRSPGGPDPRHH 69

[Close]

BLAST of Cp4.1LG02g01840 vs. NCBI nr
Match: XP_031265123.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 45.8 bits (107), Expect = 7.26e-04
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 46  VKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 82
           ++N +E LK  ++ +E LG+ F SKR+SPGGPDP HH
Sbjct: 68  MENAKEMLKDSVKRQEILGKFFDSKRVSPGGPDPHHH 104

[Close]

BLAST of Cp4.1LG02g01840 vs. NCBI nr
Match: PON98404.1 (CLAVATA3/ESR (CLE)-related protein [Trema orientale])

HSP 1 Score: 45.1 bits (105), Expect = 7.42e-04
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1  MACRVKLFVCLVVILLLCSSIAESRLLSSSSSSSSSSVSKKNQSFVKNVEETLKFIIEEK 60
          M   +KL++CL++I+   SS ++S      S S  +S  K N++ ++  ++ L+  IE  
Sbjct: 1  MVLSLKLWLCLILIV---SSFSDSE-----SRSLGTSPKKDNRTLMRTAQQVLQASIER- 60

Query: 61 EKLGRHFVSKRLSPGGPDPRHH 82
           + GR F SKR+SPGGPDP HH
Sbjct: 61 -QAGRSFESKRVSPGGPDPSHH 72

[Close]

BLAST of Cp4.1LG02g01840 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 5.21e-28
Identity = 66/84 (78.57%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 3  CRVKL--FVCLVVILLLCSSIAESRLLSSSSSSSS--SSVSKKNQSFVKNVEETLKFIIE 62
          C VKL  F  LV+ILLLCSSI+ESRLLSS S S S  SS +KKN+ FVKN EE LKFIIE
Sbjct: 4  CSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKFIIE 63

Query: 63 EKEKLGRHFVSKRLSPGGPDPRHH 82
          EKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 64 EKEKLGRHFVSKRLSPGGPDPRHH 87

[Close]

BLAST of Cp4.1LG02g01840 vs. ExPASy TrEMBL
Match: A0A6J5WAU5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS9471 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.36e-04
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 42 NQSFVKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 82
          +Q+ +++ +E LK  IE   ++GRH  SKR SPGGPDPRHH
Sbjct: 31 SQTAMESAKEVLKASIER--QVGRHLESKRRSPGGPDPRHH 69

[Close]

BLAST of Cp4.1LG02g01840 vs. ExPASy TrEMBL
Match: A0A2P5FKV9 (CLAVATA3/ESR (CLE)-related protein OS=Trema orientale OX=63057 GN=TorCLE6 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.59e-04
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 1  MACRVKLFVCLVVILLLCSSIAESRLLSSSSSSSSSSVSKKNQSFVKNVEETLKFIIEEK 60
          M   +KL++CL++I+   SS ++S      S S  +S  K N++ ++  ++ L+  IE  
Sbjct: 1  MVLSLKLWLCLILIV---SSFSDSE-----SRSLGTSPKKDNRTLMRTAQQVLQASIER- 60

Query: 61 EKLGRHFVSKRLSPGGPDPRHH 82
           + GR F SKR+SPGGPDP HH
Sbjct: 61 -QAGRSFESKRVSPGGPDPSHH 72

[Close]

BLAST of Cp4.1LG02g01840 vs. ExPASy TrEMBL
Match: A0A4D6N876 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1255 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.84e-04
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 42 NQSFVKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 82
          N +FV++    LK I+  K+ LG  +   RLSPGGPDP HH
Sbjct: 35 NHAFVESANTVLKEIMRRKQLLGTEYKPNRLSPGGPDPHHH 75

[Close]

BLAST of Cp4.1LG02g01840 vs. ExPASy TrEMBL
Match: A0A0S3SIM4 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G140800 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.43e-04
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 39 SKKNQSFVKNVEETLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 82
          S +N +F+++    LK I+  K+ LG  +   RLSPGGPDP HH
Sbjct: 32 SNQNHAFLESANTVLKEIMRRKQLLGTEYKPNRLSPGGPDPHHH 75

[Close]

BLAST of Cp4.1LG02g01840 vs. TAIR 10
Match: AT1G06225.1 (CLAVATA3/ESR-RELATED 3 )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 5  VKLFVCLVVILLL-CSSIAESR-LLSSSSSSSSSSVSKKNQSFVKNVEETLKFIIEEKEK 64
          +KL+VCLV++L+L  +S+ E R L++    S SS + K  +   + ++E       E+  
Sbjct: 4  LKLWVCLVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELFERLKEMKGRSEGEETI 63

Query: 65 LGRHFVSKRLSPGGPDPRHH 83
          LG    SKRLSPGGPDPRHH
Sbjct: 64 LGNTLDSKRLSPGGPDPRHH 83

[Close]

BLAST of Cp4.1LG02g01840 vs. TAIR 10
Match: AT2G31081.1 (CLAVATA3/ESR-RELATED 4 )

HSP 1 Score: 40.4 bits (93), Expect = 8.0e-04
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 6  KLFVCLVVILLLCSSIAESRLLSSSSSSSSSSVSKKNQSFVKNVEETLKFIIEEKEKLGR 65
          KL+VCL+++LL  S      L++  S S S ++ K  +  +K  EE LK   ++ + +  
Sbjct: 5  KLWVCLILLLLEFSVHQCRPLVAEESPSDSGNIRKIMRELLKRSEE-LKVRSKDGQTVLG 64

Query: 66 HFVSKRLSPGGPDPRHH 83
             SKRLSPGGPDPRHH
Sbjct: 65 TLDSKRLSPGGPDPRHH 80

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A072V9Z0	3.5e-04	40.51	CLAVATA3/ESR (CLE)-related protein 33 OS=Medicago truncatula OX=3880 GN=CLE33 PE...	[more]

BLAST of Cp4.1LG02g01840 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55081.1	1.08e-27	78.57	hypothetical protein Csa_012463 [Cucumis sativus]	[more]
XP_031267366.1	9.20e-05	59.46	CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera]	[more]
CAB4297523.1	6.95e-04	53.66	unnamed protein product [Prunus armeniaca]	[more]
XP_031265123.1	7.26e-04	54.05	CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera]	[more]
PON98404.1	7.42e-04	39.02	CLAVATA3/ESR (CLE)-related protein [Trema orientale]	[more]

BLAST of Cp4.1LG02g01840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4M1	5.21e-28	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1	[more]
A0A6J5WAU5	3.36e-04	53.66	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS9471 PE=4...	[more]
A0A2P5FKV9	3.59e-04	39.02	CLAVATA3/ESR (CLE)-related protein OS=Trema orientale OX=63057 GN=TorCLE6 PE=4 S...	[more]
A0A4D6N876	3.84e-04	48.78	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g1255 PE=4 SV=...	[more]
A0A0S3SIM4	5.43e-04	45.45	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]

BLAST of Cp4.1LG02g01840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06225.1	2.1e-04	42.50	CLAVATA3/ESR-RELATED 3	[more]
AT2G31081.1	8.0e-04	41.56	CLAVATA3/ESR-RELATED 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33869:SF13	SUBFAMILY NOT NAMED	coord: 1..82
IPR039616	CLAVATA3/ESR (CLE)-related protein 1/3/4	PANTHER	PTHR33869	CLAVATA3/ESR (CLE)-RELATED PROTEIN 3	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g01840.1	Cp4.1LG02g01840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
molecular_function	GO:0033612	receptor serine/threonine kinase binding