Cp4.1LG02g01180 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g01180
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	Cp4.1LG02: 4763061 .. 4764126 (-)
RNA-Seq Expression	Cp4.1LG02g01180
Synteny	Cp4.1LG02g01180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACTGTAAAGGACACCAGAAAAGGGGAAAGGGATAAACTGAATTAGAAGCTCTGCCTCTTTCTATTGCCAAATTCCTCCGTTTCTCTTCAAAGCTTTGCATCAATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAACGGGGCGTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAATCTCATTGACAAGAAGATTGGCTCTTACCAGTCTCGCATCTGTCGCTCTCTTCGGCAATGCACCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTTTGCCAATCCCTTCTGTTTATAACAGTAAGCTTTCTATTTCTTCCTGTAGAACAAGTTGAAAGTCGTTTGGTGTTTGGTAGTTCATGATGGATTCTTTGTAACAGACATAGCGAACGAGAAAACGGGTACTCGATCGTTTTTGAAGATGGGGATTTACATAGCTAACATAGGGACCGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTATGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTATGTGAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTATGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGATTTAGCAAACCGATTATTCGACAACTTCGAGAAGGTAAAGACCAAAAAAGCTTACAAAAATCTGCAATTCTTGAAGCTGAAGTTTCTTGTTTTCTGTGTTTGTAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAAACTGTGGAAGTTTTTGAGAAGATTAAGGATCAGTTTCCTTTTTTTTCCACTGTTCTTCTGTTGTTCTTGTTTATAACTCGATTCGATTTTGCATCCATAGATAAATGTGGCGTAACGATGCAATAACAGTGGTTCGAGTGTTTAATCTTAGTT

mRNA sequence

TGGACTGTAAAGGACACCAGAAAAGGGGAAAGGGATAAACTGAATTAGAAGCTCTGCCTCTTTCTATTGCCAAATTCCTCCGTTTCTCTTCAAAGCTTTGCATCAATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAACGGGGCGTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAATCTCATTGACAAGAAGATTGGCTCTTACCAGTCTCGCATCTGTCGCTCTCTTCGGCAATGCACCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTTTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACGGGTACTCGATCGTTTTTGAAGATGGGGATTTACATAGCTAACATAGGGACCGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTATGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTATGTGAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTATGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGATTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAAACTGTGGAAGTTTTTGAGAAGATTAAGGATCAGTTTCCTTTTTTTTCCACTGTTCTTCTGTTGTTCTTGTTTATAACTCGATTCGATTTTGCATCCATAGATAAATGTGGCGTAACGATGCAATAACAGTGGTTCGAGTGTTTAATCTTAGTT

Coding sequence (CDS)

ATGGCTCGTCTTGCGAACTTAAACGGTGTCTCGGAGAAGTTCTCCGCCATTCCCAAGCTTTCGAAGCTTCAAAAGACTCGTAAGAGATCGAAAATAACGGGGCGTCTCGAGAAACAAGCGGAGGTTTCCTCTCATGAAATCTCATTGACAAGAAGATTGGCTCTTACCAGTCTCGCATCTGTCGCTCTCTTCGGCAATGCACCGGTCGAGATCGCTTCTGCTAACGAGTACTGGCTCGATGGCCCTTTGCCAATCCCTTCTGTTTATAACAACATAGCGAACGAGAAAACGGGTACTCGATCGTTTTTGAAGATGGGGATTTACATAGCTAACATAGGGACCGAAGGGAGAAAATACAGATTGAAGAGATATGCGTTTGATCTTATGGCTATGGCGGATTTGATTGGGAAAGATACTTTGAATTATGTGAGGAAGTATCTTCGACTCAAATCGACGTTCATGTACTATGATTTCGACAATGTTATTTCGGCAGCAGAAGACGGTGAGAAGCAGCCTCTCACCGATTTAGCAAACCGATTATTCGACAACTTCGAGAAGCTTGAAGATGCAGCAAAGCAGAAGAATCTGAGTGAAACTGAAGCTTACTATCAACAGACAACGCCTATACTTCAAGAAGTTATGGATAGAATGGCATAA

Protein sequence

MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA

Homology

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 9.5e-65
Identity = 126/221 (57.01%), Postives = 163/221 (73.76%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLAL---TS 60
           MA   +LN ++    ++PKL + +KT K S    R  ++ +     + +TRR+ L    S
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQ-EPDSVQITRRMTLGFAVS 60

Query: 61  LASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGR 120
           +    + G   V +A  N +W+DGPLPIP +YNNI NEKTGTR+F+K G+Y+A+IGT+GR
Sbjct: 61  IGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGR 120

Query: 121 KYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLA 180
            YR+K+ AFDL+AM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAA   +KQPLTDLA
Sbjct: 121 MYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           NRLFDNFEKLEDAAK KNL+ETE+ Y+ T  +LQEVM RMA
Sbjct: 181 NRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 60/223 (26.91%), Postives = 104/223 (46.64%), Query Frame = 0


Query: 1   MARLANLNGVSEK-FSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLA 60
           MA +  L+G S        K++   +     ++      +  V + +   T R ++  L 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNAPVEIASANEYWLD-GPLPIPSVYNNIANEKTG-TRSF---LKMGIYIANIGT 120
           +  L G + V+   A+   +  GP P PS       + +   R F   LK   Y+  +  
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120

Query: 121 EGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT 180
                R K  A D++ +  LI +    YV+  LR K++++ YD + +IS+    EK+ L 
Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 6.0e-11
Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 0


Query: 36  LEKQAEVSSHEISLTRRLALTSLASVALFGNAPVE--IASANEYWLDGPLPIPSVYNNIA 95
           +  Q  VS  E S   R ++  L +  L G + V+   A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 96  NEKTGTRSF---LKMGIYIANIGTEGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLK 155
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 156 STFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPIL 215
           ++++ YD + VISA    EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 216 QEVMDRM 218
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-10
Identity = 43/169 (25.44%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 50  TRRLALTSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYI 109
           TRR  LTSL +  + G A                      + +A EK GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGA--------------------TSSALAQEKWGTRSFIKEKYFM 101

Query: 110 ANIGTEGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGE 169
             +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 170 KQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           +      AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy Swiss-Prot
Match: P12301 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBQ PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-10
Identity = 61/229 (26.64%), Postives = 106/229 (46.29%), Query Frame = 0


Query: 1   MARLANLNGVSE-------KFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRL 60
           MA +A L G S+       + S   +LS    +R      G L  +A+  S E   +RR 
Sbjct: 5   MASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMG-LNIRAQQVSAEAETSRRA 64

Query: 61  ALTSLASVALFGNAPVEIASANEYWLDGPLP-----IPSVYNNIANEKTGTRSFLKMGIY 120
            L  +A+    G+    + +     + GP P     +P   N+    + GT  + K   Y
Sbjct: 65  MLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENS-DQARDGTLPYTKDRFY 124

Query: 121 IANIGTEGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDG 180
           +  +       R K  A +++ +   I +     ++  LRL+++++ YD   VISA    
Sbjct: 125 LQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKD 184

Query: 181 EKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           EK+ L +L ++LF + + L+ AAK K+ +E E YY QT   + EV+ ++
Sbjct: 185 EKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231

[Close]

BLAST of Cp4.1LG02g01180 vs. NCBI nr
Match: XP_023525405.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421 bits (1082), Expect = 3.00e-148
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 413 bits (1062), Expect = 3.36e-145
Identity = 214/218 (98.17%), Postives = 215/218 (98.62%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITG LEKQ EVSSHEISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. NCBI nr
Match: KAG6607822.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411 bits (1056), Expect = 2.76e-144
Identity = 213/218 (97.71%), Postives = 214/218 (98.17%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITG LEKQ EVSSHEISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIA IGTEGRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIAKIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. NCBI nr
Match: XP_022940191.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 407 bits (1047), Expect = 6.50e-143
Identity = 211/218 (96.79%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKI G LEKQAEVSSHE+SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. NCBI nr
Match: XP_022981605.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 404 bits (1039), Expect = 1.08e-141
Identity = 210/218 (96.33%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKL+KTRKRSKI G LEKQAEVSSH ISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 407 bits (1047), Expect = 3.15e-143
Identity = 211/218 (96.79%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKLQKTRKRSKI G LEKQAEVSSHE+SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy TrEMBL
Match: A0A6J1IZZ5 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111480674 PE=3 SV=1)

HSP 1 Score: 404 bits (1039), Expect = 5.22e-142
Identity = 210/218 (96.33%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVSEKFSAIPKLSKL+KTRKRSKI G LEKQAEVSSH ISLTRRLALTSLAS
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLEKTRKRSKIMGLLEKQAEVSSHRISLTRRLALTSLAS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTNLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 382 bits (980), Expect = 5.13e-133
Identity = 197/218 (90.37%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNGVS+KFSAIPKL KLQ  RKR KI G L KQ EVSSH  S TRRLALTS+ S
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA VEIASANEYWLDGPLP+PSVYNNIANEKTGTRSFLK GIYIANIGTEGRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LKRYAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAA DGEKQPLT+LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 359 bits (921), Expect = 4.51e-124
Identity = 188/218 (86.24%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNG   KFSAIP L KLQ   KR KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSV NNI NE+TGTRSFLK GIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLEDAAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of Cp4.1LG02g01180 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 357 bits (917), Expect = 1.84e-123
Identity = 187/218 (85.78%), Postives = 198/218 (90.83%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLAS 60
           MARLANLNG   KFSAIP L KLQ   K+ KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60

Query: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSV NNIANE+TGTRSFLK GIYIANIGT+GRKYR
Sbjct: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120

Query: 121 LKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180
           LK+YAFDL+AMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180

Query: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218
           FDNFEKLE+AAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of Cp4.1LG02g01180 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 248.1 bits (632), Expect = 6.7e-66
Identity = 126/221 (57.01%), Postives = 163/221 (73.76%), Query Frame = 0


Query: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLAL---TS 60
           MA   +LN ++    ++PKL + +KT K S    R  ++ +     + +TRR+ L    S
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQ-EPDSVQITRRMTLGFAVS 60

Query: 61  LASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYIANIGTEGR 120
           +    + G   V +A  N +W+DGPLPIP +YNNI NEKTGTR+F+K G+Y+A+IGT+GR
Sbjct: 61  IGLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGR 120

Query: 121 KYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLA 180
            YR+K+ AFDL+AM DLIG DTLNYV+KYLRLKSTF++YDFDN+ISAA   +KQPLTDLA
Sbjct: 121 MYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLA 180

Query: 181 NRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           NRLFDNFEKLEDAAK KNL+ETE+ Y+ T  +LQEVM RMA
Sbjct: 181 NRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of Cp4.1LG02g01180 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-14
Identity = 60/222 (27.03%), Postives = 103/222 (46.40%), Query Frame = 0


Query: 1   MARLANLNGVSEK-FSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLA 60
           MA +  L+G S        K++   +     ++      +  V + +   T R ++  L 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNAPVEIASANEYWLD-GPLPIPSVYNNIANEKTGTRSF---LKMGIYIANIGTE 120
           +  L G + V+   A+   +  GP P PS      +     R F   LK   Y+  +   
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPT 120

Query: 121 GRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTD 180
               R K  A D++ +  LI +    YV+  LR K++++ YD + +IS+    EK+ L D
Sbjct: 121 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 180

Query: 181 LANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           L  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of Cp4.1LG02g01180 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-14
Identity = 60/223 (26.91%), Postives = 104/223 (46.64%), Query Frame = 0


Query: 1   MARLANLNGVSEK-FSAIPKLSKLQKTRKRSKITGRLEKQAEVSSHEISLTRRLALTSLA 60
           MA +  L+G S        K++   +     ++      +  V + +   T R ++  L 
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNAPVEIASANEYWLD-GPLPIPSVYNNIANEKTG-TRSF---LKMGIYIANIGT 120
           +  L G + V+   A+   +  GP P PS       + +   R F   LK   Y+  +  
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120

Query: 121 EGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLT 180
                R K  A D++ +  LI +    YV+  LR K++++ YD + +IS+    EK+ L 
Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180

Query: 181 DLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRM 218
           DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cp4.1LG02g01180 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-12
Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 0


Query: 36  LEKQAEVSSHEISLTRRLALTSLASVALFGNAPVE--IASANEYWLDGPLPIPSVYNNIA 95
           +  Q  VS  E S   R ++  L +  L G + V+   A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 96  NEKTGTRSF---LKMGIYIANIGTEGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLK 155
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 156 STFMYYDFDNVISAAEDGEKQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPIL 215
           ++++ YD + VISA    EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 216 QEVMDRM 218
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]

BLAST of Cp4.1LG02g01180 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-11
Identity = 43/169 (25.44%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 50  TRRLALTSLASVALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKMGIYI 109
           TRR  LTSL +  + G A                      + +A EK GTRSF+K   ++
Sbjct: 42  TRRRTLTSLITFTVIGGA--------------------TSSALAQEKWGTRSFIKEKYFM 101

Query: 110 ANIGTEGRKYRLKRYAFDLMAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGE 169
             +  E    R+K+ A  L  M +++   +  YV  Y+RLK  ++  D  N ++   +  
Sbjct: 102 PGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESR 161

Query: 170 KQPLTDLANRLFDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 219
           +      AN L +N  +L+   +   + E+  YY++T   +  V++ +A
Sbjct: 162 RNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g01180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	9.5e-65	57.01	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	1.1e-12	26.91	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41932	6.0e-11	30.48	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q9XI73	3.0e-10	25.44	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
P12301	3.0e-10	26.64	Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea OX=3562 G...	[more]

BLAST of Cp4.1LG02g01180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525405.1	3.00e-148	100.00	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita pepo ...	[more]
KAG7015220.1	3.36e-145	98.17	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]
KAG6607822.1	2.76e-144	97.71	Photosynthetic NDH subunit of lumenal location 3, chloroplastic, partial [Cucurb...	[more]
XP_022940191.1	6.50e-143	96.79	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita mosch...	[more]
XP_022981605.1	1.08e-141	96.33	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita maxim...	[more]

BLAST of Cp4.1LG02g01180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FHS2	3.15e-143	96.79	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1IZZ5	5.22e-142	96.33	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita max...	[more]
A0A6J1CCI9	5.13e-133	90.37	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A0A0L7N1	4.51e-124	86.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A5A7TX10	1.84e-123	85.78	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Cp4.1LG02g01180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	6.7e-66	57.01	PsbQ-like 1	[more]
AT4G21280.1	2.1e-14	27.03	photosystem II subunit QA	[more]
AT4G21280.2	7.8e-14	26.91	photosystem II subunit QA	[more]
AT4G05180.1	4.3e-12	30.48	photosystem II subunit Q-2	[more]
AT1G14150.1	2.1e-11	25.44	PsbQ-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 25..218 e-value: 9.4E-55 score: 185.5
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..218
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 80..218 e-value: 1.4E-44 score: 153.7
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 108..218
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g01180.1	Cp4.1LG02g01180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity