Cp4.1LG01g24950 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG01g24950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionpentatricopeptide repeat-containing protein At5g04780
LocationCp4.1LG01: 18547110 .. 18548827 (-)
RNA-Seq ExpressionCp4.1LG01g24950
SyntenyCp4.1LG01g24950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGTGAAGTCATCTCCATCTTCGAATTTAGCTAATTATTAATGATCCATTTCATTTGATCCATCAATCAGTTCAAAGCTAAATGCAAACCCAGCCCATTAATAATCCGCGAGGATCAAACCATGGATTCTTCAAACAGTTCGTATCTTGTTTGAAAAATCAGGGTAGAAAAGGATTCTAACAACAGTTCAACAATTTGTTTGCGTTCTCTGGAAACTGTTCATAATCAACCATTAAAGATTCTTTCTCTCAATGCATCATCTGATCTGGAATTTTTGTTTCGATAGCTGTCGATGAAGCTGCCTGAGATGTTCTTCGTAACAATTTAATGAGATTTCTCCATGTTTGCCATTTTGCAGAAAATTCAGGAAGATACGAAGAGAAGAGGTTCTTTCGATTTCTTGCATCGTTATATCCATTGTTGAATCCAATGTTGATTGTTCTTGCAAGGGAAGGTTTGCCATGCCTAATTTCTTCTTAGGGGATTGCACGAAGGTACATTAACGTCAAATATTGTCATTAGTTGATGTTGCACGGCAACTGTTTGATGAAATGCCCAGCCGAAGTTTTGTGTTGTGGAACACCATGATTGGGTCAGCTTACTCATAATGGTGAGGAGAATGAGGCTCTTGGTCTTCCACCGAAGATGCAAAGAGAAGGAACCCTTCTTGTGAATTCACAGTTGATGATTGTTGGGAAGTAGTCCTACGTTAGCTAATCAATCATGAGTTTATAAGTAAGAAATACATCTCCATTGGTATGAAGCCGGTTGAGAAAATCAAAAGCAAAGTCATGAGTGCTTATGTTCAAAGTAGGCAATATCATACCATTGTGGAGAGAGTCGGGTTCTTAATCTGGTATCAGAGTCATGCTTTTAACTTGGCCATGTCAATAGAATCCTTAAGTGTCGAACAAAGGGTGTACTTTGTTTGAGGGCTCTAGAGAAGGAGTCGAGCCTTGATTAAGGGGAGGCTGTTCGAGGGCTCCATAGGTCTCATGAGAGGCTCTATGGTGTACTTTGTTCGATGGGGAGAATTGTTGGGAAGGAGTCCACATTGTCTTATTAAGAGGATGATTATAGGTTTATAAGTAAGGAATACATCTCTATTGGTATGAGACGTTTTGGGAAAATCAAAAGCAAAGCCATGAGAGTTTATGCTCCAAATGGATAATATCATACCATCGTGGAGGTTCGTGTTCTTTGCGTCTGTGCAGCATTGTGAATGTCAGCTGCCTCATGCCTTTGCTGTTAAGGCGGTGATGTATATGAATGATGTTTATGCAAAATGTGGTTTGATGTAGGATGGGGCTTGTGTCTGTGAGTCCATGCCTGAGAGGAGTGTTGTCACATGGAGTTCAATAGCGGCACGGTCTGTGCAAAATGAACTGTATGAGGAAGCTTTGGCATTGTTTCAAACAGCTCGGGAAACGGGGTCGAGATGAGGCGGAGACTGAAACCGAGCATGATCTTCACCAAGTGGGAGAGTGTAGAAAACAAGAGTTTTTGAGGTATCACATAACGAGAAGCTCGGTTTAGAATATGTGGAATCTTACATCGCTTGGAGAGAGAAATAAAGCATTACATAAGAAGGTGTGAAAATCTTTATACTCTCTCTAGTAAACACGTCTTAAACCTTTGAGGGGAAAGCCCAAATAATACAACATCTAAGTGGGCGGTGGACTCGGCTATTCCACTCCCTTCTCACTAACTTCTCTC

mRNA sequence

TGGGGTGAAGTCATCTCCATCTTCGAATTTAGCTAATTATTAATGATCCATTTCATTTGATCCATCAATCAGTTCAAAGCTAAATGCAAACCCAGCCCATTAATAATCCGCGAGGATCAAACCATGGATTCTTCAAACAGTTCGTATCTTGTTTGAAAAATCAGGGTAGAAAAGGATTCTAACAACAGTTCAACAATTTGTTTGCGTTCTCTGGAAACTGTTCATAATCAACCATTAAAGATTCTTTCTCTCAATGCATCATCTGATCTGGAATTTTTGTTTCGATAGCTGTCGATGAAGCTGCCTGAGATGTTCTTCGTAACAATTTAATGAGATTTCTCCATGTTTGCCATTTTGCAGAAAATTCAGGAAGATACGAAGAGAAGAGGTTCTTTCGATTTCTTGCATCGTTATATCCATTGTTGAATCCAATGTTGATTGTTCTTGCAAGGGAAGGTTTGCCATGCCTAATTTCTTCTTAGGGGATTGCACGAAGGATGGGGCTTGTGTCTGTGAGTCCATGCCTGAGAGGAGTGTTGTCACATGGAGTTCAATAGCGGCACGGTCTGTGCAAAATGAACTGTATGAGGAAGCTTTGGCATTGTTTCAAACAGCTCGGGAAACGGGGTCGAGATGAGGCGGAGACTGAAACCGAGCATGATCTTCACCAAGTGGGAGAGTGTAGAAAACAAGAGTTTTTGAGGTATCACATAACGAGAAGCTCGGTTTAGAATATGTGGAATCTTACATCGCTTGGAGAGAGAAATAAAGCATTACATAAGAAGGTGTGAAAATCTTTATACTCTCTCTAGTAAACACGTCTTAAACCTTTGAGGGGAAAGCCCAAATAATACAACATCTAAGTGGGCGGTGGACTCGGCTATTCCACTCCCTTCTCACTAACTTCTCTC

Coding sequence (CDS)

ATGCCTAATTTCTTCTTAGGGGATTGCACGAAGGATGGGGCTTGTGTCTGTGAGTCCATGCCTGAGAGGAGTGTTGTCACATGGAGTTCAATAGCGGCACGGTCTGTGCAAAATGAACTGTATGAGGAAGCTTTGGCATTGTTTCAAACAGCTCGGGAAACGGGGTCGAGATGA

Protein sequence

MPNFFLGDCTKDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETGSR
Homology
[Close]
BLAST of Cp4.1LG01g24950 vs. ExPASy Swiss-Prot
Match: Q9LZ19 (Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-04
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTAR 53
           KD   V ESM ++S VTWSS+ A  VQN+ YEEAL L++ A+
Sbjct: 214 KDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQ 255

[Close]
BLAST of Cp4.1LG01g24950 vs. NCBI nr
Match: KAG6602248.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 1.65e-19
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 7  GDCTKDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETGSR 57
          G+ ++D  CVC+SMPERSVVTWSS+AA SVQNELYEEALALFQTARETGS+
Sbjct: 20 GEESEDATCVCKSMPERSVVTWSSMAAGSVQNELYEEALALFQTARETGSK 70

[Close]
BLAST of Cp4.1LG01g24950 vs. NCBI nr
Match: XP_038884459.1 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Benincasa hispida] >XP_038884460.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Benincasa hispida] >XP_038884461.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 6.77e-12
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD ACV ESMPERSVVTWSS+ A  VQNE+YEEALALF  A ETG
Sbjct: 220 KDAACVFESMPERSVVTWSSMVAGYVQNEMYEEALALFCKALETG 264

[Close]
BLAST of Cp4.1LG01g24950 vs. NCBI nr
Match: XP_004140992.1 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Cucumis sativus] >KAE8646637.1 hypothetical protein Csa_005652 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.73e-11
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD  CV ESMP+RSVVTWSS+AA  VQNE+YE+ALALF+ A ETG
Sbjct: 217 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 261

[Close]
BLAST of Cp4.1LG01g24950 vs. NCBI nr
Match: TYK11777.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.53e-10
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD   V ESMP+RSVVTWSS+AA  VQNE+YEEALALF+ A ETG
Sbjct: 82  KDAVSVFESMPDRSVVTWSSMAAGYVQNEMYEEALALFRKAWETG 126

[Close]
BLAST of Cp4.1LG01g24950 vs. NCBI nr
Match: XP_008456610.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g04780 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.54e-10
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD   V ESMP+RSVVTWSS+AA  VQNE+YEEALALF+ A ETG
Sbjct: 221 KDAVSVFESMPDRSVVTWSSMAAGYVQNEMYEEALALFRKAWETG 265

[Close]
BLAST of Cp4.1LG01g24950 vs. ExPASy TrEMBL
Match: A0A0A0K9E0 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046260 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.33e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD  CV ESMP+RSVVTWSS+AA  VQNE+YE+ALALF+ A ETG
Sbjct: 110 KDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETG 154

[Close]
BLAST of Cp4.1LG01g24950 vs. ExPASy TrEMBL
Match: A0A5D3CIL5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001040 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.41e-11
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD   V ESMP+RSVVTWSS+AA  VQNE+YEEALALF+ A ETG
Sbjct: 82  KDAVSVFESMPDRSVVTWSSMAAGYVQNEMYEEALALFRKAWETG 126

[Close]
BLAST of Cp4.1LG01g24950 vs. ExPASy TrEMBL
Match: A0A1S3C4B6 (pentatricopeptide repeat-containing protein At5g04780 OS=Cucumis melo OX=3656 GN=LOC103496519 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.45e-11
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETG 55
           KD   V ESMP+RSVVTWSS+AA  VQNE+YEEALALF+ A ETG
Sbjct: 221 KDAVSVFESMPDRSVVTWSSMAAGYVQNEMYEEALALFRKAWETG 265

[Close]
BLAST of Cp4.1LG01g24950 vs. ExPASy TrEMBL
Match: A0A6J1BZB9 (pentatricopeptide repeat-containing protein At5g04780 OS=Momordica charantia OX=3673 GN=LOC111006613 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.07e-10
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETGSR 57
            D A V ESMPERS VTWSS+AA  VQNELYEEALALF+ A+  G R
Sbjct: 210 NDAARVFESMPERSAVTWSSMAAGYVQNELYEEALALFRKAQGIGLR 256

[Close]
BLAST of Cp4.1LG01g24950 vs. ExPASy TrEMBL
Match: A0A6J5WCD5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS12887 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.48e-09
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0 

Query: 11 KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETGS 56
          KD +CV  S+PERS VTWSS+ A  VQN LYEEAL  F  A+  GS
Sbjct: 18 KDASCVLASLPERSEVTWSSMVAGYVQNGLYEEALMFFHRAKMVGS 63

[Close]
BLAST of Cp4.1LG01g24950 vs. TAIR 10
Match: AT5G04780.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 2.3e-05
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 11  KDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTAR 53
           KD   V ESM ++S VTWSS+ A  VQN+ YEEAL L++ A+
Sbjct: 214 KDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQ 255

[Close]
BLAST of Cp4.1LG01g24950 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 39.7 bits (91), Expect = 9.5e-04
Identity = 18/54 (33.33%), Postives = 31/54 (57.41%), Query Frame = 0 

Query: 4   FFLGDCTKDGACVCESMPERSVVTWSSIAARSVQNELYEEALALFQTARETGSR 58
           +  G   KDG  V + M ER+VVTW+++ +   +N + +E L LF   +  G++
Sbjct: 138 YMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ 191

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g24950 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LZ193.2e-0454.76Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG01g24950 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602248.11.65e-1980.39Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_038884459.16.77e-1277.78pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Benincasa ... [more]
XP_004140992.11.73e-1173.33pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Cucumis sa... [more]
TYK11777.11.53e-1073.33pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_008456610.11.54e-1073.33PREDICTED: pentatricopeptide repeat-containing protein At5g04780 [Cucumis melo][more]
BLAST of Cp4.1LG01g24950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9E08.33e-1273.33DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0462... [more]
A0A5D3CIL57.41e-1173.33Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C4B67.45e-1173.33pentatricopeptide repeat-containing protein At5g04780 OS=Cucumis melo OX=3656 GN... [more]
A0A6J1BZB99.07e-1070.21pentatricopeptide repeat-containing protein At5g04780 OS=Momordica charantia OX=... [more]
A0A6J5WCD52.48e-0960.87Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS12887 PE=... [more]
BLAST of Cp4.1LG01g24950 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04780.12.3e-0554.76Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G27610.19.5e-0433.33Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g24950.1Cp4.1LG01g24950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding