Cp4.1LG01g24670 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g24670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	ras-related protein RABC2a-like
Location	Cp4.1LG01: 18799293 .. 18803449 (+)
RNA-Seq Expression	Cp4.1LG01g24670
Synteny	Cp4.1LG01g24670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAATGTGGCTCCAACAGATCAAGAACATTGTGTGAGATAAAGAGAAGAGAGAGATGATGAGGTGGGCAGGTAAGAAGTTGTTGAGTGGCAGGAGCATGAAGAACACTTGTTGAGCTTAGGCAATGCCAATCCATTTTCCATGACACCGCTCTCTTGCTTCTAAATTTGTCCCTTCTTTATCATTACTTCATTTCTTTATTTCAACCAAAACCCAGTCAAAATCCAACATGAACAACAACAAAAACCCAAATATTTCATCTAAAAAAACACCCATTTCTTGATTCATTCTCTCTTTCAATAATCCATTCAAATTTCAAACACCCTGTTCTTCATATAAACGTTTGAATCAAATAAAAACCCTCAAAAGCTTGAAAAATTGTGGACAAATTGGAAGAATTTTGAGATGAAATGAGACAAATAATGTTGCAGGCCATAGAATCTACAAAAAGCGGACTCAGCCCATTGAAGGTAAAGGGCAAGTTTGTCCAAACGCTATAATTTACACACGTACACTACCGGCTACTGCCAGCTCCTTCTCTCTGTTACGTTTTCGTTTCTCATAACCTCACCAATTCCATTTCCTTCTTTTGATGGTTTTGATTTCATTCTGTTCTTCTTGTTTATGGAAAAGGGTTTTTGTGAGAGAGAGTTAAAAAGATAGAGAAGAGAAATGATGGGTTCTTCTTCAAAAGCAAGAAGCAGTAGCTATGATTACTCGTTCAAGATACTGTTGATTGGGGATTCTGGCGTTGGGAAAAGCAGTATTCTCCTCAGTTACATATCCAATTTTGTTCAAGATCTGTCTCCCACAATCGGTTTGTTCTATGTCTTTCTCATTATATATGTGCATGTTCTTGTGGATATCATGAAATTGCTACAACCCAGATGCTCTGTTCTGAGTTTTGGTCTTATTTGAATCATCTGAGAAATCTTGATGGTTCTGCTAGTTGGATGAACACATATTGGTTGAATATTTTTGTTTTTTGTTGTTGGTTCTTCTTTGTTCTTAGTCTGCTGATCGTAGTTTTTGGATTGATTTCTGGCGTTTGGAATGTTTTTGAGTTGGGAGTTATATGTTAGAATGGTTTCTCTATCTTCAAGGGATGAAGTGTTGTCGTAGTGGGTAACCGTCGAAGCCCACCGCTAGTGATGTTGGCCGCTTTGGCCTGTTATGTACCGCCGTCAGCCTCATGGCTTTAAAACGTGTCTACATGAGGCTTTACAACGCGTCTACTAGGGAGAGGTTTTCACACCCTTGTAAGGAATGTTTCGTTCAGAGATCTCATAGAGTGAGAGCTACTGGCTTTGAATCAATTTTGTGGCTGAGTAGATTTAGTTTCAAATCATGATTAGTTTAGAACTTTGGAAAGCCACACACACATATATAGAGTTCAACCAGTCTGGATTCGGACCTCTGATTTGTTGGTCGAGGACATATGCTTCACCTAATTGAGCTGTGTGTGTATATATATATATAGAGAGAGAGAGTTCAACAAGTCTGGATTCAAACCTCTGAATTGTTGGTCGAGTACATTGTTTCCCCTAATTGAGCTGTGTGTGTGTGTATATATATAGAGAGAGAGTTCAACAAGTCGGGATTCGAACTTCTGAATTGTTGGGAGAGGACATATGCTTCACCTAATTGAGCTATGTGTGTGTGTGTGTGTGTATATATATATATAGAGAGAGAGAGAGAGCGAGTTCAACAAGTCGGGATTCGGACCTCTGAATTGTTGGTCGAGGACATGTGCTTCACCTAATTGAGCTGTGTGTGTCTTATATGTGTGTGTATATATAGAGAGAGAGAGAGAGTTCAACAAGTCGGGATTCAAACCTCTGAATTGTTGGTCGAGTACATTGCTTCACCTAATTGAGCTATGTGTGTGTGTGTGTGTATATAGAGAGAGAGAGTTCAATAAGTCGGGATTCAAACCTCTGAATTGTTGGTTGAGTACATTGCTTCACCTAATTGAGCTGTGTGTGTGTGTGTGTGTGTATAGAGAGAGGGTTCAACAAGTCGGGATTTGAACCTCTGAATTGTTGGGAGAGGACATATGCTTCACCTAATCGAGTTATGTGTGTGTGTATATATATAGAGAGAGAGTACAACAAGTCGGGATTCGAACCTATGAAGGGTTGGTCGTGGTCATATGCCTCAACTAGTTGATCTATGCTTCCATGAACACTTAGAGAGCCATATTATTCTTTAAAACGAGTCGATTGTACTTGGTGAGGTAGGTGCTCATTGTTAAGGAGTTTGTAGTAGGTTGAAAAGAGGTGTCTGTGGCCAGGCTCCTTATAGTATTGGGTCGGGAATCTTTGGTCTTCTCTTTTGCATTTCTGCTGTCTGCGTTCTTTTTTGTGTCTGTCTGTACCGCAAAAATGGTCGACACCAGCTCTAATGGTTGAAAATAGAGGGCCAACTAAGACCCTGTAATAAAGCTTCGATAAAACAAACGATTCATTCCCACAACTTCAGACCAGGAAGAAACGAAGTTTTTTGAAACATCGGAATGATACATTTAGTCGTTTATATGAATAAATTATTCTAATTCCATTAACTTCTCATTTCGCTCGATTAATTTTCTTTTCATGCATGGCTGCAGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGAAAAAGATTGAAGCTAACGATTTGGGACACAGGTAACTGGATGATTTACCCGTTCTTCTGGTCTCGTGTTTGCGTTTTTAGCTTGTGCGAGCTGCTCGATACAGAAAGTTTCTTCGTTTTTCTGCTTCGATGCTACGCTTACTCTATGAAGTGTTCGTTCACCCATTTAATATACAATATCTTATCCTTTGTTCTTGTATGCAGCTGGACAGGAGAGGTTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGGTATGACCGAAATTTATCCGTTAAAAAATTCTTTGAAATGATTATTTTTCTAAAAAAAGCGGGAAAATTCCCCTCGGGAACCTCCTTGCCCCGATTCCCACACAAATAAATAGGGAGTTTTGTGGGGATGGGGTTGAAATAGTAGGTGGCGACGTGTCGGTTTTCTACGTTTTATTTTGGGACCTTTCTCTCATGGCACGTTCCGTTGTCACGGTTGAATGTATTGAATTCAGTTTGAACACTTCACGAGGCTGATACTTATGTATGTTTTGCTGATAGTGTACGATGTTACCCGACGGGAGACGTTTACGAACTTGATGGACGTATGGGCAAAGGAAGTAGAGATGTATTTAACCAATCATGAGTGCATAAAAATTCTTGTTGGAAATAAAGTCGATCGAGTAAGTTGTATGATCCTACCGTCGTTCAAACCTCAAACTCTTCATTTTAAGGAATCTTTAATATCGACAGGGTAGCGAAAGAGCTGTTTCGACAGAAGAAGGTATGGCCGTTGCCAAGGAGCATCAAAGTTTGTTTCTCGAGTGCAGTGCTAGAACTCGAGAAAATGTCGATAGATGCTTTAAAGAACTCTCTTCAAAGGTAACGCTCCAACGCTAAGATGCTCGTGTTTTACTTCATTGTGTTGTATTCGAACTAAAAACTCCTCCTAAGAATGGCCACAAGTATTAGTTTAGGAGCTGTAATGCAACGGTTTGCGTACTTACTCGAGCTCGTGATATCTTCTTCATTTCTTTTCGGTGGGGTTAGCTATAAAGCTCAAAACCCAGTCCCCCATGTCGAATGTATTTCATCTCATGATCTAAATCGGTTTATTACATTCCAGATACTGGAAGTTCCGAGTCTACTAGAAAATGGATCTGTCGTGGTGAAACAGAAAATTTTGGACAAAACTCGAGCACGAAAAGAAGCGAACGATGGGGGTTGTTGCCGCTAACCCGACGCAACCCGACGCAACGAATCAGATATGGAAGATCACGAAATTGTTGATTAGAACAGAGGCCAGGAAAGACACAAACGAGGCAACCAAGGTGATTACATTGTTTGTATCAGCTTTTTTCTTTCAAAAGAGAATAAAAAAGAATGCATTGGAATGGTGTCTTTGAGATCACTGTAAAAGTTTTGGGTGAATTTTGTTGGGATAATGACTTTTTGAGTAACAAAATTTAATAAAATCCTTGTAGATAATGTGAATGTATTTTTAATATCATTCACACTTCATCCC

mRNA sequence

CGAATGTGGCTCCAACAGATCAAGAACATTGTGTGAGATAAAGAGAAGAGAGAGATGATGAGGTGGGCAGGTAAGAAGTTGTTGAGTGGCAGGAGCATGAAGAACACTTGTTGAGCTTAGGCAATGCCAATCCATTTTCCATGACACCGCTCTCTTGCTTCTAAATTTGTCCCTTCTTTATCATTACTTCATTTCTTTATTTCAACCAAAACCCAGTCAAAATCCAACATGAACAACAACAAAAACCCAAATATTTCATCTAAAAAAACACCCATTTCTTGATTCATTCTCTCTTTCAATAATCCATTCAAATTTCAAACACCCTGTTCTTCATATAAACGTTTGAATCAAATAAAAACCCTCAAAAGCTTGAAAAATTGTGGACAAATTGGAAGAATTTTGAGATGAAATGAGACAAATAATGTTGCAGGCCATAGAATCTACAAAAAGCGGACTCAGCCCATTGAAGGGTTTTTGTGAGAGAGAGTTAAAAAGATAGAGAAGAGAAATGATGGGTTCTTCTTCAAAAGCAAGAAGCAGTAGCTATGATTACTCGTTCAAGATACTGTTGATTGGGGATTCTGGCGTTGGGAAAAGCAGTATTCTCCTCAGTTACATATCCAATTTTGTTCAAGATCTGTCTCCCACAATCGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGAAAAAGATTGAAGCTAACGATTTGGGACACAGTGTACGATGTTACCCGACGGGAGACGTTTACGAACTTGATGGACGTATGGGCAAAGGAAGTAGAGATGTATTTAACCAATCATGAGTGCATAAAAATTCTTGTTGGAAATAAAGTCGATCGAGGTAGCGAAAGAGCTGTTTCGACAGAAGAAGGTATGGCCGTTGCCAAGGAGCATCAAAGTTTGTTTCTCGAGTGCAGTGCTAGAACTCGAGAAAATGTCGATAGATGCTTTAAAGAACTCTCTTCAAAGATACTGGAAGTTCCGAGTCTACTAGAAAATGGATCTGTCGTGGTGAAACAGAAAATTTTGGACAAAACTCGAGCACGAAAAGAAGCGAACGATGGGGGTTGTTGCCGCTAACCCGACGCAACCCGACGCAACGAATCAGATATGGAAGATCACGAAATTGTTGATTAGAACAGAGGCCAGGAAAGACACAAACGAGGCAACCAAGGTGATTACATTGTTTGTATCAGCTTTTTTCTTTCAAAAGAGAATAAAAAAGAATGCATTGGAATGGTGTCTTTGAGATCACTGTAAAAGTTTTGGGTGAATTTTGTTGGGATAATGACTTTTTGAGTAACAAAATTTAATAAAATCCTTGTAGATAATGTGAATGTATTTTTAATATCATTCACACTTCATCCC

Coding sequence (CDS)

ATGATGGGTTCTTCTTCAAAAGCAAGAAGCAGTAGCTATGATTACTCGTTCAAGATACTGTTGATTGGGGATTCTGGCGTTGGGAAAAGCAGTATTCTCCTCAGTTACATATCCAATTTTGTTCAAGATCTGTCTCCCACAATCGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGAAAAAGATTGAAGCTAACGATTTGGGACACAGTGTACGATGTTACCCGACGGGAGACGTTTACGAACTTGATGGACGTATGGGCAAAGGAAGTAGAGATGTATTTAACCAATCATGAGTGCATAAAAATTCTTGTTGGAAATAAAGTCGATCGAGGTAGCGAAAGAGCTGTTTCGACAGAAGAAGGTATGGCCGTTGCCAAGGAGCATCAAAGTTTGTTTCTCGAGTGCAGTGCTAGAACTCGAGAAAATGTCGATAGATGCTTTAAAGAACTCTCTTCAAAGATACTGGAAGTTCCGAGTCTACTAGAAAATGGATCTGTCGTGGTGAAACAGAAAATTTTGGACAAAACTCGAGCACGAAAAGAAGCGAACGATGGGGGTTGTTGCCGCTAA

Protein sequence

MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGGKRLKLTIWDTVYDVTRRETFTNLMDVWAKEVEMYLTNHECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEVPSLLENGSVVVKQKILDKTRARKEANDGGCCR

Homology

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.2e-65
Identity = 132/211 (62.56%), Postives = 157/211 (74.41%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+L+S+IS+ V+DL+PTIGVDFKIK +TVGG
Sbjct: 1   MGSSS--GQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGG 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           KRLKLTIWDT                      VYDVTRRETFTNL+DVW KE+E+Y TN 
Sbjct: 61  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           EC+++LVGNKVDR SER VS EEG+A+AKE   +FLECSARTR+NV++CF+EL+ KI+EV
Sbjct: 121 ECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSLLE GS  VK+ IL +    +     GCC
Sbjct: 181 PSLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-61
Identity = 132/211 (62.56%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+LLS+IS+ V+DL+PTIGVDFKIK + V G
Sbjct: 1   MGSSS--GQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRG 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           KRLKLTIWDT                      VYDVT+RETF NL D+WAKE+E+Y TNH
Sbjct: 61  KRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNH 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           +CIK+LVGNKVDR SER VS EEGMA+AK+   LF ECSARTRENV+ CF+EL+ KI+EV
Sbjct: 121 DCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSLLE GS  VK+K          A+ G CC
Sbjct: 181 PSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.7e-55
Identity = 116/211 (54.98%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS      +DY FK+LLIGDSGVGKSS+LLS+ SN   DLSPTIGVDFK+K +T+G 
Sbjct: 1   MGSSS--GQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGE 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           K+LKL IWDT                      VYDVTRR+TFTNL D+WAKE+++Y TN 
Sbjct: 61  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           +CIK+LVGNKVD+ SERAVS +EG+  A+E+  LFLECSA+TR NV++CF+EL  KILE 
Sbjct: 121 DCIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILET 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSL   GS   K+ I  +  A+  +     C
Sbjct: 181 PSLTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-35
Identity = 85/180 (47.22%), Postives = 110/180 (61.11%), Query Frame = 0


Query: 12  SYDYSFKILLIGDSGVGKSSILLSYISN-FVQDLSPTIGVDFKIKMVTVGGKRLKLTIWD 71
           S+DY+FK+LL+GDSGVGKS IL  + S  F +  + TIGVDFK+K +T  GKR KLTIWD
Sbjct: 5   SHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWD 64

Query: 72  T----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNHECIKILVGN 131
           T                      VYDVTRR+TF +L   W +E ++Y T    IK++V N
Sbjct: 65  TAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVAN 124

Query: 132 KVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEVPSLLENGSV 169
           KVD  ++R VS+EEG   A+ H  LF+E SAR    V + F+EL  KIL+ P LLE  +V
Sbjct: 125 KVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAV 184

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy Swiss-Prot
Match: Q5ZLG1 (Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-32
Identity = 83/198 (41.92%), Postives = 117/198 (59.09%), Query Frame = 0


Query: 16  SFKILLIGDSGVGKSSILLSYISN-FVQDLSPTIGVDFKIKMVTVGGKRLKLTIWDT--- 75
           + KIL+IG+SGVGKSS+LL +  + F  +L+ TIGVDFK+K ++V G + KL IWDT   
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 67

Query: 76  -------------------VYDVTRRETFTNLMDVWAKEVEMYLTNHECIKILVGNKVDR 135
                              VYDVTRR+TF  L D W  E+E Y T ++ +K+LVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDK 127

Query: 136 GSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEVPSLLENGSVVVKQ 191
              R V   EG+  A++H  LF+E SA+T + V   F+EL  KI++ P L E+ S     
Sbjct: 128 -ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESESQNKGV 187

[Close]

BLAST of Cp4.1LG01g24670 vs. NCBI nr
Match: XP_022952871.1 (ras-related protein RABC2a-like [Cucurbita moschata] >XP_022952881.1 ras-related protein RABC2a-like [Cucurbita moschata] >XP_023514704.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo] >XP_023514780.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo] >KAG6602284.1 Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 363 bits (931), Expect = 8.75e-126
Identity = 191/213 (89.67%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNLMDVWAKEVEMYLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVEMYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
           HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE
Sbjct: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCCR 191
           VPSLLENGSVVVKQKILDKTRARKEANDGGCCR
Sbjct: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCCR 213

[Close]

BLAST of Cp4.1LG01g24670 vs. NCBI nr
Match: XP_022990456.1 (ras-related protein RABC2a-like [Cucurbita maxima])

HSP 1 Score: 357 bits (917), Expect = 1.19e-123
Identity = 189/213 (88.73%), Postives = 189/213 (88.73%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNLM VWAKEVEMYLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMGVWAKEVEMYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
           HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE
Sbjct: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCCR 191
           VPSLLENGSVVVKQKILDKTRA KEANDGGCCR
Sbjct: 181 VPSLLENGSVVVKQKILDKTRALKEANDGGCCR 213

[Close]

BLAST of Cp4.1LG01g24670 vs. NCBI nr
Match: XP_038885704.1 (ras-related protein RABC2a-like [Benincasa hispida])

HSP 1 Score: 342 bits (877), Expect = 1.49e-117
Identity = 180/212 (84.91%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSK R SSYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNLMDVWAKEVEMYLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVEMYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
            ECIKILVGNKVDRGSERAV+TEEGM VAKEH+SLFLECSARTRENVDRCF+ELSSKILE
Sbjct: 121 RECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFRELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCC 190
           VPSLLENGSVVVKQKILD TRARKEAND GCC
Sbjct: 181 VPSLLENGSVVVKQKILDNTRARKEANDRGCC 212

[Close]

BLAST of Cp4.1LG01g24670 vs. NCBI nr
Match: KAG7032965.1 (Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330 bits (847), Expect = 2.65e-113
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG
Sbjct: 24  MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 83

Query: 61  GKRLKLTIWDTVYDVTRRETFTNLMDVWAKEVEMYLTNHECIKILVGNKVDRGSERAVST 120
           GKRLKLTIWDTVYDVTRRETFTNLMDVWAKEVEMYLTNHECIKILVGNKVDRGSERAVST
Sbjct: 84  GKRLKLTIWDTVYDVTRRETFTNLMDVWAKEVEMYLTNHECIKILVGNKVDRGSERAVST 143

Query: 121 EEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEVPSLLENGSVV 169
           EEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEVPSLLENGSVV
Sbjct: 144 EEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEVPSLLENGSVV 192

[Close]

BLAST of Cp4.1LG01g24670 vs. NCBI nr
Match: XP_008456546.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis melo])

HSP 1 Score: 327 bits (839), Expect = 9.82e-112
Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSK R  SYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNL+++WAKEVE+YLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINIWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
            ECIKILVGNKVDRGSERAV+TEEGM +AKEH+SLFLECSARTRENVDRCF+ELSSKILE
Sbjct: 121 RECIKILVGNKVDRGSERAVTTEEGMEIAKEHKSLFLECSARTRENVDRCFRELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEA--NDGGCC 190
           VPSLLENGS+VVKQKILDKTRA KE   ND GCC
Sbjct: 181 VPSLLENGSIVVKQKILDKTRAHKEVEVNDRGCC 214

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy TrEMBL
Match: A0A6J1GLE8 (ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111455431 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 4.24e-126
Identity = 191/213 (89.67%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNLMDVWAKEVEMYLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVEMYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
           HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE
Sbjct: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCCR 191
           VPSLLENGSVVVKQKILDKTRARKEANDGGCCR
Sbjct: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCCR 213

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy TrEMBL
Match: A0A6J1JMZ9 (ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111487310 PE=4 SV=1)

HSP 1 Score: 357 bits (917), Expect = 5.77e-124
Identity = 189/213 (88.73%), Postives = 189/213 (88.73%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNLM VWAKEVEMYLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMGVWAKEVEMYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
           HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE
Sbjct: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCCR 191
           VPSLLENGSVVVKQKILDKTRA KEANDGGCCR
Sbjct: 181 VPSLLENGSVVVKQKILDKTRALKEANDGGCCR 213

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy TrEMBL
Match: A0A1S3C3K9 (ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103496466 PE=4 SV=1)

HSP 1 Score: 327 bits (839), Expect = 4.76e-112
Identity = 172/214 (80.37%), Postives = 181/214 (84.58%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSK R  SYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNL+++WAKEVE+YLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINIWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
            ECIKILVGNKVDRGSERAV+TEEGM +AKEH+SLFLECSARTRENVDRCF+ELSSKILE
Sbjct: 121 RECIKILVGNKVDRGSERAVTTEEGMEIAKEHKSLFLECSARTRENVDRCFRELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEA--NDGGCC 190
           VPSLLENGS+VVKQKILDKTRA KE   ND GCC
Sbjct: 181 VPSLLENGSIVVKQKILDKTRAHKEVEVNDRGCC 214

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy TrEMBL
Match: A0A0A0LN27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G326500 PE=4 SV=1)

HSP 1 Score: 324 bits (831), Expect = 7.87e-111
Identity = 171/214 (79.91%), Postives = 182/214 (85.05%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSK R  SYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GK+LKLTIWDT                      VYDVTRRETFTNL++VWAKEVE+YLTN
Sbjct: 61  GKKLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINVWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
            ECIKILVGNKVDRGS+RAV+TEEGM VAK+H+SLFLECSARTRENVDRCFKELSSK++E
Sbjct: 121 RECIKILVGNKVDRGSDRAVTTEEGMEVAKKHKSLFLECSARTRENVDRCFKELSSKMME 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEA--NDGGCC 190
           VPSLLENGSVVVKQKILDKT+ARKE   ND GCC
Sbjct: 181 VPSLLENGSVVVKQKILDKTQARKEVEVNDRGCC 214

[Close]

BLAST of Cp4.1LG01g24670 vs. ExPASy TrEMBL
Match: A0A6J1BW00 (ras-related protein RABC2a-like OS=Momordica charantia OX=3673 GN=LOC111006017 PE=4 SV=1)

HSP 1 Score: 322 bits (824), Expect = 8.55e-110
Identity = 166/212 (78.30%), Postives = 178/212 (83.96%), Query Frame = 0


Query: 1   MMGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVG 60
           MMGSSSK R  SYDYSFKILLIGDSGVGKSSILLSYISNFV DLSPTIGVDFKIK VTVG
Sbjct: 1   MMGSSSKGRWFSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKTVTVG 60

Query: 61  GKRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTN 120
           GKRLKLTIWDT                      VYDVTRRETFTNL+++WAKEVE+YLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGMLTSSYYRGAHGIILVYDVTRRETFTNLLNIWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILE 180
           HECIKILVGNKVDRGSER VSTEEGMAVA EH+S+FLECSA+TRENVDRCF++L  KIL+
Sbjct: 121 HECIKILVGNKVDRGSERVVSTEEGMAVAAEHKSMFLECSAKTRENVDRCFRDLCLKILK 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCC 190
           VPSLLENGSV +KQ+ILDKTRARK A DGGCC
Sbjct: 181 VPSLLENGSVAMKQQILDKTRARKAAEDGGCC 212

[Close]

BLAST of Cp4.1LG01g24670 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-66
Identity = 132/211 (62.56%), Postives = 157/211 (74.41%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+L+S+IS+ V+DL+PTIGVDFKIK +TVGG
Sbjct: 1   MGSSS--GQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGG 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           KRLKLTIWDT                      VYDVTRRETFTNL+DVW KE+E+Y TN 
Sbjct: 61  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           EC+++LVGNKVDR SER VS EEG+A+AKE   +FLECSARTR+NV++CF+EL+ KI+EV
Sbjct: 121 ECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSLLE GS  VK+ IL +    +     GCC
Sbjct: 181 PSLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of Cp4.1LG01g24670 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 132/211 (62.56%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+LLS+IS+ V+DL+PTIGVDFKIK + V G
Sbjct: 1   MGSSS--GQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRG 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           KRLKLTIWDT                      VYDVT+RETF NL D+WAKE+E+Y TNH
Sbjct: 61  KRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNH 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           +CIK+LVGNKVDR SER VS EEGMA+AK+   LF ECSARTRENV+ CF+EL+ KI+EV
Sbjct: 121 DCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSLLE GS  VK+K          A+ G CC
Sbjct: 181 PSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of Cp4.1LG01g24670 vs. TAIR 10
Match: AT3G09910.2 (RAB GTPase homolog C2B )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 132/211 (62.56%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+LLS+IS+ V+DL+PTIGVDFKIK + V G
Sbjct: 1   MGSSS--GQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRG 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           KRLKLTIWDT                      VYDVT+RETF NL D+WAKE+E+Y TNH
Sbjct: 61  KRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNH 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           +CIK+LVGNKVDR SER VS EEGMA+AK+   LF ECSARTRENV+ CF+EL+ KI+EV
Sbjct: 121 DCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSLLE GS  VK+K          A+ G CC
Sbjct: 181 PSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of Cp4.1LG01g24670 vs. TAIR 10
Match: AT3G09910.3 (RAB GTPase homolog C2B )

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-62
Identity = 132/211 (62.56%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+LLS+IS+ V+DL+PTIGVDFKIK + V G
Sbjct: 1   MGSSS--GQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRG 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           KRLKLTIWDT                      VYDVT+RETF NL D+WAKE+E+Y TNH
Sbjct: 61  KRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNH 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           +CIK+LVGNKVDR SER VS EEGMA+AK+   LF ECSARTRENV+ CF+EL+ KI+EV
Sbjct: 121 DCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSLLE GS  VK+K          A+ G CC
Sbjct: 181 PSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]

BLAST of Cp4.1LG01g24670 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 216.5 bits (550), Expect = 1.9e-56
Identity = 116/211 (54.98%), Postives = 144/211 (68.25%), Query Frame = 0


Query: 2   MGSSSKARSSSYDYSFKILLIGDSGVGKSSILLSYISNFVQDLSPTIGVDFKIKMVTVGG 61
           MGSSS      +DY FK+LLIGDSGVGKSS+LLS+ SN   DLSPTIGVDFK+K +T+G 
Sbjct: 1   MGSSS--GQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGE 60

Query: 62  KRLKLTIWDT----------------------VYDVTRRETFTNLMDVWAKEVEMYLTNH 121
           K+LKL IWDT                      VYDVTRR+TFTNL D+WAKE+++Y TN 
Sbjct: 61  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVSTEEGMAVAKEHQSLFLECSARTRENVDRCFKELSSKILEV 181
           +CIK+LVGNKVD+ SERAVS +EG+  A+E+  LFLECSA+TR NV++CF+EL  KILE 
Sbjct: 121 DCIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILET 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 191
           PSL   GS   K+ I  +  A+  +     C
Sbjct: 181 PSLTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g24670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49841	2.2e-65	62.56	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
Q9SF92	1.9e-61	62.56	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
O23657	2.7e-55	54.98	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
P36862	4.0e-35	47.22	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]
Q5ZLG1	1.4e-32	41.92	Ras-related protein Rab-18 OS=Gallus gallus OX=9031 GN=RAB18 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g24670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952871.1	8.75e-126	89.67	ras-related protein RABC2a-like [Cucurbita moschata] >XP_022952881.1 ras-related...	[more]
XP_022990456.1	1.19e-123	88.73	ras-related protein RABC2a-like [Cucurbita maxima]	[more]
XP_038885704.1	1.49e-117	84.91	ras-related protein RABC2a-like [Benincasa hispida]	[more]
KAG7032965.1	2.65e-113	100.00	Ras-related protein RABC2a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008456546.1	9.82e-112	80.37	PREDICTED: ras-related protein RABC2a-like [Cucumis melo]	[more]

BLAST of Cp4.1LG01g24670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLE8	4.24e-126	89.67	ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111455431 PE...	[more]
A0A6J1JMZ9	5.77e-124	88.73	ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111487310 PE=4...	[more]
A0A1S3C3K9	4.76e-112	80.37	ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103496466 PE=4 SV=...	[more]
A0A0A0LN27	7.87e-111	79.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G326500 PE=4 SV=1	[more]
A0A6J1BW00	8.55e-110	78.30	ras-related protein RABC2a-like OS=Momordica charantia OX=3673 GN=LOC111006017 P...	[more]

BLAST of Cp4.1LG01g24670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03530.1	1.5e-66	62.56	RAB GTPase homolog C2A	[more]
AT3G09910.1	1.4e-62	62.56	RAB GTPase homolog C2B	[more]
AT3G09910.2	1.4e-62	62.56	RAB GTPase homolog C2B	[more]
AT3G09910.3	1.4e-62	62.56	RAB GTPase homolog C2B	[more]
AT1G43890.1	1.9e-56	54.98	RAB GTPASE HOMOLOG B18	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 17..38 score: 47.48 coord: 39..55 score: 35.1 coord: 57..79 score: 30.34
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 14..159 e-value: 2.4E-12 score: 56.1
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 17..159 e-value: 8.6E-58 score: 208.0
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 72..190
None	No IPR available	PANTHER	PTHR24073:SF643	SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED	coord: 72..190
None	No IPR available	PANTHER	PTHR24073:SF643	SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED	coord: 3..71
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 3..71
None	No IPR available	PROSITE	PS51419	RAB	coord: 12..190 score: 19.452553
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 19..159 e-value: 4.6E-9 score: -2.7
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 72..157 e-value: 1.0E-19 score: 70.7 coord: 18..71 e-value: 6.7E-15 score: 55.0
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..191 score: 9.06229
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..71 e-value: 2.2E-18 score: 68.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 72..187 e-value: 2.8E-23 score: 84.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 12..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g24670.1	Cp4.1LG01g24670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding