Cp4.1LG01g20340 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAGAAAGAAAGAAAAAGAAAAAAGAAATAAAAATCCCTAAAAACGGGCCCAGGCTCGATCGGTGCAGTGGCCGAGCTCCAACCGAAGAGGGTTCAGTCGGAGGATTACGGTGTTTCTCCGCGATCAGATTTGCACAAACAGATAGAGAGATGCGAGGTACTGGTGGACCTCTTCTCTGCATAGGCGATCTTCTGTGCGATGTCGGAGAAGAAGAAGCCGGAGAAGGAAAGGGATCTAATGAAACCCCTAAATCAGTAATATCATCAACTTCTTCCTCTGCTTCCGTTTCCACTCTTCCGCTCGCATCAGAAATCCCCGATCTCCCCAAACTCTTTCAGGTTCCCTGTTTATCTTTCGATTTTTTATTTTTCGCTTTCTTTTCTGGTTGTCCTGTAAGTCATTGAGTACTCTGGTAATTGATGCTTCGATTACGGTTTCGTACGCTTTGAATGCAGATTGTAGTATCGCGAATGTGATTTTTGAGGATTGCGAATATTTTGTAATGAGCTTGATGTTTATTTCATATTCTAATCTTCTTTTGCTTCAGGAAAACTACGACCAATTGAACAAATCATTCGATGATAATGACCACTCTTGGACAGCTTTGACGTTGAAGGTAGGGCGTTTCTTGTGTTTGACAATCAATTTGAATGATTCAGTGATATGAACTTTACTTTCTAACAATTTACAACCTCATTTCCTTTGATTTTGAAAGACCGCTTCGTGTTTGTGCAAAGAAATTAGCATTATACTATCCAGCAAATTGGCTTCTATTTCCTTGTGACTTCATTTTTGGGGCATTTTCAGATGTGCAGTGCTCTTGATACTGCTAGTAAATTGGTTGAATCAACCAACTCAAATTCGAGATTTTTGTTGGAGAAGATTGTGGAGCTTGAACAGGTTTTGGAAAAGGGGGATTCTACAAGAGAGGCGGCCATGGCCATCCAAACCAGTTTTAGCTCTCAAGTTGCTCAGGACTCCATTTCTTCTCAGAATCAAGGTTAGCATAAGCTTATACATTAAAGGGGTTTCTCATCTTTGTTGATGCATTATGGAAATCTTCTCTTGACAAATACTCGTTTGAGCAGTTGCCATATTCATTGCTTTGATTCATGCAGTTTGATTTCTTATGCAGTTGGTGTAGTCGAGATAAATTTGAGTTTTAATTATTTGTAATCATATTATGATTGGATTAGATTTAGTAGTTCAAGTAAATAGAATAAGGATGGAATGTATGGTTGAGAGACATATGGGGTTCAAAGCTTAGTCAGTTGGACATATAAGATATAGGTTACAGATGTTATTATGCTCATTCCAATGATAGAGTTTAGATTAAATTACAAGTTTAGTTCTTGAGCTTTTGTTTACTTTAATCAAAGGTGTTTCATAGGTTCACAAACACTCAATTTTGTCTAATAGGTCTATATTCTATAAAAATTTGATATCGAGATTGGGAATGATATGGGGATGAAAATGGCTCGTGATCTATATGTAG TATAGAAAGAAAGAAAAAGAAAAAAGAAATAAAAATCCCTAAAAACGGGCCCAGGCTCGATCGGTGCAGTGGCCGAGCTCCAACCGAAGAGGGTTCAGTCGGAGGATTACGGTGTTTCTCCGCGATCAGATTTGCACAAACAGATAGAGAGATGCGAGGTACTGGTGGACCTCTTCTCTGCATAGGCGATCTTCTGTGCGATGTCGGAGAAGAAGAAGCCGGAGAAGGAAAGGGATCTAATGAAACCCCTAAATCAGTAATATCATCAACTTCTTCCTCTGCTTCCGTTTCCACTCTTCCGCTCGCATCAGAAATCCCCGATCTCCCCAAACTCTTTCAGGAAAACTACGACCAATTGAACAAATCATTCGATGATAATGACCACTCTTGGACAGCTTTGACGTTGAAGATGTGCAGTGCTCTTGATACTGCTAGTAAATTGGTTGAATCAACCAACTCAAATTCGAGATTTTTGTTGGAGAAGATTGTGGAGCTTGAACAGGTTTTGGAAAAGGGGGATTCTACAAGAGAGGCGGCCATGGCCATCCAAACCAGTTTTAGCTCTCAAGTTGCTCAGGACTCCATTTCTTCTCAGAATCAAGGTTAGCATAAGCTTATACATTAAAGGGGTTTCTCATCTTTGTTGATGCATTATGGAAATCTTCTCTTGACAAATACTCGTTTGAGCAGTTGCCATATTCATTGCTTTGATTCATGCAGTTTGATTTCTTATGCAGTTGGTGTAGTCGAGATAAATTTGAGTTTTAATTATTTGTAATCATATTATGATTGGATTAGATTTAGTAGTTCAAGTAAATAGAATAAGGATGGAATGTATGGTTGAGAGACATATGGGGTTCAAAGCTTAGTCAGTTGGACATATAAGATATAGGTTACAGATGTTATTATGCTCATTCCAATGATAGAGTTTAGATTAAATTACAAGTTTAGTTCTTGAGCTTTTGTTTACTTTAATCAAAGGTGTTTCATAGGTTCACAAACACTCAATTTTGTCTAATAGGTCTATATTCTATAAAAATTTGATATCGAGATTGGGAATGATATGGGGATGAAAATGGCTCGTGATCTATATGTAG ATGCGAGGTACTGGTGGACCTCTTCTCTGCATAGGCGATCTTCTGTGCGATGTCGGAGAAGAAGAAGCCGGAGAAGGAAAGGGATCTAATGAAACCCCTAAATCAGTAATATCATCAACTTCTTCCTCTGCTTCCGTTTCCACTCTTCCGCTCGCATCAGAAATCCCCGATCTCCCCAAACTCTTTCAGGAAAACTACGACCAATTGAACAAATCATTCGATGATAATGACCACTCTTGGACAGCTTTGACGTTGAAGATGTGCAGTGCTCTTGATACTGCTAGTAAATTGGTTGAATCAACCAACTCAAATTCGAGATTTTTGTTGGAGAAGATTGTGGAGCTTGAACAGGTTTTGGAAAAGGGGGATTCTACAAGAGAGGCGGCCATGGCCATCCAAACCAGTTTTAGCTCTCAAGTTGCTCAGGACTCCATTTCTTCTCAGAATCAAGGTTAG MRGTGGPLLCIGDLLCDVGEEEAGEGKGSNETPKSVISSTSSSASVSTLPLASEIPDLPKLFQENYDQLNKSFDDNDHSWTALTLKMCSALDTASKLVESTNSNSRFLLEKIVELEQVLEKGDSTREAAMAIQTSFSSQVAQDSISSQNQG Homology
BLAST of Cp4.1LG01g20340 vs. NCBI nr
Match: XP_023516408.1 (uncharacterized protein LOC111780279 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 288 bits (736), Expect = 1.06e-97 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. NCBI nr
Match: KAG7032788.1 (hypothetical protein SDJN02_06838 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 283 bits (723), Expect = 1.02e-95 Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. NCBI nr
Match: XP_022964546.1 (uncharacterized protein LOC111464539 [Cucurbita moschata]) HSP 1 Score: 282 bits (722), Expect = 1.44e-95 Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. NCBI nr
Match: XP_022989818.1 (uncharacterized protein LOC111486891 [Cucurbita maxima]) HSP 1 Score: 280 bits (715), Expect = 1.68e-94 Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. NCBI nr
Match: KAG6602083.1 (DIS3-like exonuclease 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 283 bits (723), Expect = 8.20e-86 Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. ExPASy TrEMBL
Match: A0A6J1HJ70 (uncharacterized protein LOC111464539 OS=Cucurbita moschata OX=3662 GN=LOC111464539 PE=4 SV=1) HSP 1 Score: 282 bits (722), Expect = 6.98e-96 Identity = 148/151 (98.01%), Postives = 149/151 (98.68%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. ExPASy TrEMBL
Match: A0A6J1JRF3 (uncharacterized protein LOC111486891 OS=Cucurbita maxima OX=3661 GN=LOC111486891 PE=4 SV=1) HSP 1 Score: 280 bits (715), Expect = 8.15e-95 Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. ExPASy TrEMBL
Match: A0A5D3BZV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00780 PE=4 SV=1) HSP 1 Score: 243 bits (620), Expect = 2.56e-80 Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. ExPASy TrEMBL
Match: A0A1S3BE50 (uncharacterized protein LOC103488633 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103488633 PE=4 SV=1) HSP 1 Score: 243 bits (620), Expect = 2.93e-80 Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. ExPASy TrEMBL
Match: A0A0A0K969 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040570 PE=4 SV=1) HSP 1 Score: 241 bits (614), Expect = 2.10e-79 Identity = 128/152 (84.21%), Postives = 138/152 (90.79%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. TAIR 10
Match: AT4G08240.2 (unknown protein; Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 119.4 bits (298), Expect = 2.5e-27 Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 0
BLAST of Cp4.1LG01g20340 vs. TAIR 10
Match: AT4G08240.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 119.4 bits (298), Expect = 2.5e-27 Identity = 65/139 (46.76%), Postives = 93/139 (66.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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