Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACAGCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAATATAGTTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCTGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGCTTTCTTCTAACTCATCAGATTTTCTCTTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA
mRNA sequence
ATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACAGCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAATATAGTTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCTGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGCTTTCTTCTAACTCATCAGATTTTCTCTTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA
Coding sequence (CDS)
ATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTCCACAGCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAATATAGTTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCTGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTTCAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGCTTTCTTCTAACTCATCAGATTTTCTCTTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA
Protein sequence
MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTNLGNIVLGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK
Homology
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 180 bits (457), Expect = 3.35e-55
Identity = 105/157 (66.88%), Postives = 119/157 (75.80%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQT--NLGNIVLGL 60
MNELYSFI A+N RNP I+S LPICI M+ P NS +T N+G +LGL
Sbjct: 1 MNELYSFITAINERNPEINS-----------LPICITMQRPSPANSSKTENNVGKTILGL 60
Query: 61 TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
TFQAVLALFI+SP S PPLLTHLF AAVLISF VSFAG+FLQN FPRIALLF K+ ALIA
Sbjct: 61 TFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120
Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
A+GV I+AS LL HQ F+WISWL FSL+AFVLSF+
Sbjct: 121 AIGVCIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 176 bits (445), Expect = 3.18e-53
Identity = 102/157 (64.97%), Postives = 119/157 (75.80%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQT--NLGNIVLGL 60
MN LYS I ++N RNP I+ GLPICI M+ + P NS +T N+G +LGL
Sbjct: 12 MNHLYSLITSINERNPEIN-----------GLPICIIMQTASPANSSKTENNVGTTILGL 71
Query: 61 TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
TFQAVLALFI+S TS PPLLTHLFGAAVLISF VSF GVFLQ+ FPRIALLF K+ ALIA
Sbjct: 72 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 131
Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
A+GV I+AS LL HQ F+WISWL C FSL+AF+LSF+
Sbjct: 132 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match:
KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 145 bits (366), Expect = 2.61e-41
Identity = 84/131 (64.12%), Postives = 97/131 (74.05%), Query Frame = 0
Query: 28 ASAGLPICIRM-KNSPPPNSPQT--NLGNIVLGLTFQAVLALFISSPTSYPPLLTHLFGA 87
AS GLP M + PPP+S QT NLG IV GLTFQAVLALFIS PTS PPLL H+F A
Sbjct: 21 ASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAA 80
Query: 88 AVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTHQIFSWISWLPCA 147
A+LISF +S A +FLQ A+PRIAL GK+ AL+AA+G I S LL HQ FSWI WL C
Sbjct: 81 AMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACG 140
Query: 148 FSLIAFVLSFK 155
F+L+AF+LSFK
Sbjct: 141 FALMAFILSFK 151
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 143 bits (361), Expect = 2.22e-40
Identity = 87/157 (55.41%), Postives = 104/157 (66.24%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTN-LGNIVLGLT 60
M+ SFI ++ RN G+ T S LP+ IRM+ SP + + LG I+L L+
Sbjct: 12 MSAFSSFIRTISQRNYGLGCCC----TPSNCLPVFIRMQQSPQATADSSQKLGKIILSLS 71
Query: 61 FQAVLALFISSP-TSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
FQAVLALFISSP TS PPLL H F AAV ISF VSFA +FL N+FPR A LF K+ AL +
Sbjct: 72 FQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFS 131
Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
A GV IASFLL HQ F+WI W+ C FS+I F LSFK
Sbjct: 132 AFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of Cp4.1LG01g18800 vs. NCBI nr
Match:
KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 139 bits (350), Expect = 4.85e-39
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 0
Query: 48 QTNLGNIVLGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIA 107
+ NLG IV GLTFQAVLALFIS+PTS+PPLL +LF AA+LIS +S A +FLQ AFPRIA
Sbjct: 32 RNNLGKIVFGLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIA 91
Query: 108 LLFGKLSALIAAMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
L FGK+ A++AA+G I+AS LL HQ FSWI WL C F+L+AF+LSFK
Sbjct: 92 LSFGKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 139
BLAST of Cp4.1LG01g18800 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 180 bits (457), Expect = 1.62e-55
Identity = 105/157 (66.88%), Postives = 119/157 (75.80%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQT--NLGNIVLGL 60
MNELYSFI A+N RNP I+S LPICI M+ P NS +T N+G +LGL
Sbjct: 1 MNELYSFITAINERNPEINS-----------LPICITMQRPSPANSSKTENNVGKTILGL 60
Query: 61 TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
TFQAVLALFI+SP S PPLLTHLF AAVLISF VSFAG+FLQN FPRIALLF K+ ALIA
Sbjct: 61 TFQAVLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIA 120
Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
A+GV I+AS LL HQ F+WISWL FSL+AFVLSF+
Sbjct: 121 AIGVCIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of Cp4.1LG01g18800 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 176 bits (445), Expect = 1.54e-53
Identity = 102/157 (64.97%), Postives = 119/157 (75.80%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQT--NLGNIVLGL 60
MN LYS I ++N RNP I+ GLPICI M+ + P NS +T N+G +LGL
Sbjct: 12 MNHLYSLITSINERNPEIN-----------GLPICIIMQTASPANSSKTENNVGTTILGL 71
Query: 61 TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
TFQAVLALFI+S TS PPLLTHLFGAAVLISF VSF GVFLQ+ FPRIALLF K+ ALIA
Sbjct: 72 TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 131
Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
A+GV I+AS LL HQ F+WISWL C FSL+AF+LSF+
Sbjct: 132 AIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of Cp4.1LG01g18800 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 143 bits (361), Expect = 1.07e-40
Identity = 87/157 (55.41%), Postives = 104/157 (66.24%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTN-LGNIVLGLT 60
M+ SFI ++ RN G+ T S LP+ IRM+ SP + + LG I+L L+
Sbjct: 12 MSAFSSFIRTISQRNYGLGCCC----TPSNCLPVFIRMQQSPQATADSSQKLGKIILSLS 71
Query: 61 FQAVLALFISSP-TSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIA 120
FQAVLALFISSP TS PPLL H F AAV ISF VSFA +FL N+FPR A LF K+ AL +
Sbjct: 72 FQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFS 131
Query: 121 AMGVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
A GV IASFLL HQ F+WI W+ C FS+I F LSFK
Sbjct: 132 AFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of Cp4.1LG01g18800 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 135 bits (339), Expect = 9.39e-38
Identity = 79/114 (69.30%), Postives = 87/114 (76.32%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWG--TSTASAGLPICIRMKNSPPPNSPQTNLGNIVLGL 60
MN L SFI A+N RN GISS TWG TST S LPICIRM+ PP S Q+ LG +LGL
Sbjct: 12 MNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAKSSQS-LGKTILGL 71
Query: 61 TFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGK 112
TFQAVLALFIS P+S P L T LFGAAVLISF VSFAG+FLQ A+PR+ALLF K
Sbjct: 72 TFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRMALLFEK 124
BLAST of Cp4.1LG01g18800 vs. ExPASy TrEMBL
Match:
A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)
HSP 1 Score: 134 bits (337), Expect = 4.36e-37
Identity = 83/155 (53.55%), Postives = 100/155 (64.52%), Query Frame = 0
Query: 1 MNELYSFINAMNGRNPGISSITWGTSTASAGLPICIRMKNSPPPNSPQTNLGNIVLGLTF 60
MNELYSFI A+ RNPGISS TWGT+ AS LPI I+M+ P NSPQ GN + F
Sbjct: 13 MNELYSFITAVTNRNPGISSCTWGTA-ASDCLPIYIKMQRPSPVNSPQ--FGNTFVSSNF 72
Query: 61 QAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFLQNAFPRIALLFGKLSALIAAM 120
QA+L LF++ P S PPL + L G +L +FV SF GV LQ FP+IA L AL+AA+
Sbjct: 73 QAILGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALLAAI 132
Query: 121 GVWIIASFLLTHQIFSWISWLPCAFSLIAFVLSFK 155
GV I+ S LL H +WI WL C L AF+ SFK
Sbjct: 133 GVCIMGSPLL-HPNLTWIRWLACGLILPAFITSFK 162
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0050246.1 | 3.35e-55 | 66.88 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KGN49803.1 | 3.18e-53 | 64.97 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
| KAG6579137.1 | 2.61e-41 | 64.12 | hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN49808.1 | 2.22e-40 | 55.41 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
| KAG6579136.1 | 4.85e-39 | 67.59 | hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U7U1 | 1.62e-55 | 66.88 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJN8 | 1.54e-53 | 64.97 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
| A0A0A0KJP2 | 1.07e-40 | 55.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
| A0A6J1CY58 | 9.39e-38 | 69.30 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
| A0A5D3BEH8 | 4.36e-37 | 53.55 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
