Cp4.1LG01g16980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g16980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	calmodulin-like
Location	Cp4.1LG01: 11069485 .. 11069853 (+)
RNA-Seq Expression	Cp4.1LG01g16980
Synteny	Cp4.1LG01g16980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAAGTGAGAGGATCTAAGAAGTGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTGGTGACATTGTTCTAAGTTCAACTCAACTCAACAATCAAGACATGGTACCAGAAATCCTAAAAGATAACAAGAATGTTGGACCCAAGCTTAGTTCAAATACTCACTCAAAGACATCTAAGTTGCAATTTAGTCGAGAGCAGCTGACGGAGATCTTTAGATATCATGATAGCGACAAGGATGGTTTTCTCAATTTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCGTATGGCATGGCATATGCCGATGCAAATAAAGATGGCCTTATCAGCTAG

mRNA sequence

ATGAAGCAAGTGAGAGGATCTAAGAAGTGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTGGTGACATTGTTCTAAGTTCAACTCAACTCAACAATCAAGACATGGTACCAGAAATCCTAAAAGATAACAAGAATGTTGGACCCAAGCTTAGTTCAAATACTCACTCAAAGACATCTAAGTTGCAATTTAGTCGAGAGCAGCTGACGGAGATCTTTAGATATCATGATAGCGACAAGGATGGTTTTCTCAATTTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCGTATGGCATGGCATATGCCGATGCAAATAAAGATGGCCTTATCAGCTAG

Coding sequence (CDS)

ATGAAGCAAGTGAGAGGATCTAAGAAGTGTACTAGAAATGGTGATAATGTTCAACTAAAAGCTTTTGGTGACATTGTTCTAAGTTCAACTCAACTCAACAATCAAGACATGGTACCAGAAATCCTAAAAGATAACAAGAATGTTGGACCCAAGCTTAGTTCAAATACTCACTCAAAGACATCTAAGTTGCAATTTAGTCGAGAGCAGCTGACGGAGATCTTTAGATATCATGATAGCGACAAGGATGGTTTTCTCAATTTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCGTATGGCATGGCATATGCCGATGCAAATAAAGATGGCCTTATCAGCTAG

Protein sequence

MKQVRGSKKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSREQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS

Homology

[Close]

BLAST of Cp4.1LG01g16980 vs. NCBI nr
Match: XP_022930012.1 (calmodulin-2/4-like [Cucurbita moschata])

HSP 1 Score: 197 bits (501), Expect = 2.22e-62
Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK TRNGDNVQLKAF  I  +STQ+NNQ MVPEIL+DNKNVGPK SSNTH K S +QFSR
Sbjct: 20  KKSTRNGDNVQLKAFNGIARASTQVNNQSMVPEILRDNKNVGPKFSSNTHLKASNMQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIFRYHDSDKDGFLN+RELTKAFAFLGSIIPFEKASYGM YADANKDGLIS
Sbjct: 80  EQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. NCBI nr
Match: XP_023530739.1 (calmodulin-2/4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194 bits (494), Expect = 2.58e-61
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK TRNGDNVQLKAF  I  +STQ+NNQ MVPEIL+DNKNVGPK SSNTH K S +QFSR
Sbjct: 20  KKNTRNGDNVQLKAFNGIARASTQVNNQGMVPEILRDNKNVGPKFSSNTHLKASNMQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           E++ EIFRYHDSDKDGFLN+RELTKAFAFLGSIIPFEKASYGM YADANKDGLIS
Sbjct: 80  EKMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. NCBI nr
Match: XP_022930007.1 (uncharacterized protein LOC111436449 [Cucurbita moschata])

HSP 1 Score: 194 bits (492), Expect = 5.21e-61
Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK  RNGD+VQLK+F DI   STQLNNQ  +PEILKDNKNVG KLSSN H KTSKLQFSR
Sbjct: 20  KKYPRNGDDVQLKSFSDIARDSTQLNNQGKIPEILKDNKNVGLKLSSNAHPKTSKLQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIF+YHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGM+YADANKDGLIS
Sbjct: 80  EQMKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. NCBI nr
Match: XP_022930014.1 (calmodulin-like [Cucurbita moschata])

HSP 1 Score: 193 bits (490), Expect = 1.05e-60
Identity = 97/115 (84.35%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK  RNGD VQLK+FG I   STQLNNQ  +PEILKDNKNVG KLSSNTH KT KLQF+R
Sbjct: 20  KKYPRNGDGVQLKSFGGITRDSTQLNNQGKIPEILKDNKNVGLKLSSNTHPKTPKLQFTR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGM+YADANKDGLIS
Sbjct: 80  EQMKEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. NCBI nr
Match: XP_023530717.1 (calmodulin-2/4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (487), Expect = 3.01e-60
Identity = 97/115 (84.35%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK  RNGD+VQLK+F  I   STQLNNQ  +PEILKDNKNVG KLSSN H KTSKLQFSR
Sbjct: 20  KKYPRNGDDVQLKSFSGIARDSTQLNNQGKIPEILKDNKNVGLKLSSNAHPKTSKLQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGM YADANKDGLIS
Sbjct: 80  EQMKEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMTYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. ExPASy TrEMBL
Match: A0A6J1EP72 (calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 1.07e-62
Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK TRNGDNVQLKAF  I  +STQ+NNQ MVPEIL+DNKNVGPK SSNTH K S +QFSR
Sbjct: 20  KKSTRNGDNVQLKAFNGIARASTQVNNQSMVPEILRDNKNVGPKFSSNTHLKASNMQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIFRYHDSDKDGFLN+RELTKAFAFLGSIIPFEKASYGM YADANKDGLIS
Sbjct: 80  EQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMTYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. ExPASy TrEMBL
Match: A0A6J1EP67 (uncharacterized protein LOC111436449 OS=Cucurbita moschata OX=3662 GN=LOC111436449 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 2.52e-61
Identity = 97/115 (84.35%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK  RNGD+VQLK+F DI   STQLNNQ  +PEILKDNKNVG KLSSN H KTSKLQFSR
Sbjct: 20  KKYPRNGDDVQLKSFSDIARDSTQLNNQGKIPEILKDNKNVGLKLSSNAHPKTSKLQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIF+YHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGM+YADANKDGLIS
Sbjct: 80  EQMKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. ExPASy TrEMBL
Match: A0A6J1EQE8 (calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111436456 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 5.09e-61
Identity = 97/115 (84.35%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK  RNGD VQLK+FG I   STQLNNQ  +PEILKDNKNVG KLSSNTH KT KLQF+R
Sbjct: 20  KKYPRNGDGVQLKSFGGITRDSTQLNNQGKIPEILKDNKNVGLKLSSNTHPKTPKLQFTR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           EQ+ EIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGM+YADANKDGLIS
Sbjct: 80  EQMKEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADANKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. ExPASy TrEMBL
Match: A0A6J1JZF1 (calmodulin-2/4-like OS=Cucurbita maxima OX=3661 GN=LOC111490224 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 8.41e-60
Identity = 95/114 (83.33%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK  RNGD+VQLK+FG I   STQ+NNQ  + EILKDNKNVG KLSSNTH KTSKLQFSR
Sbjct: 20  KKYPRNGDDVQLKSFGGITRDSTQVNNQGKISEILKDNKNVGLKLSSNTHPKTSKLQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLI 121
           EQ+ EIFRYHDSDKDGFLN+RELTKAFAFLGSIIPFEKASYGM+YADANKDGLI
Sbjct: 80  EQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMSYADANKDGLI 133

[Close]

BLAST of Cp4.1LG01g16980 vs. ExPASy TrEMBL
Match: A0A6J1EQF3 (calcium-binding protein CML38-like OS=Cucurbita moschata OX=3662 GN=LOC111436460 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 4.86e-59
Identity = 94/115 (81.74%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 8   KKCTRNGDNVQLKAFGDIVLSSTQLNNQDMVPEILKDNKNVGPKLSSNTHSKTSKLQFSR 67
           KK TRNGDNVQLKAF  I  +STQ+NNQ MVPEI +DNKNVGPKLSSNT  K S +QFSR
Sbjct: 20  KKRTRNGDNVQLKAFSGIARASTQVNNQGMVPEIFRDNKNVGPKLSSNTQLKASNMQFSR 79

Query: 68  EQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMAYADANKDGLIS 122
           E L EIF+YHDSDKDGFLNLRELTKAFAFLGSIIPFEK SYGM YADA+KDGLIS
Sbjct: 80  EHLKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKGSYGMTYADADKDGLIS 134

[Close]

BLAST of Cp4.1LG01g16980 vs. TAIR 10
Match: AT3G50770.1 (calmodulin-like 41 )

HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04
Identity = 22/70 (31.43%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 50  PKLSSNTHSKTSKLQFSREQLTEIFRYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYG 109
           P+ +S+ ++     Q S+E+L ++F + DSD DG ++  EL   F  +G  I  E A   
Sbjct: 45  PRSNSDDNNNIKSHQASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEA 104

Query: 110 MAYADANKDG 120
           +   D + DG
Sbjct: 105 INEVDTDADG 114

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16980 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g16980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930012.1	2.22e-62	84.35	calmodulin-2/4-like [Cucurbita moschata]	[more]
XP_023530739.1	2.58e-61	83.48	calmodulin-2/4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930007.1	5.21e-61	84.35	uncharacterized protein LOC111436449 [Cucurbita moschata]	[more]
XP_022930014.1	1.05e-60	84.35	calmodulin-like [Cucurbita moschata]	[more]
XP_023530717.1	3.01e-60	84.35	calmodulin-2/4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cp4.1LG01g16980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EP72	1.07e-62	84.35	calmodulin-2/4-like OS=Cucurbita moschata OX=3662 GN=LOC111436455 PE=4 SV=1	[more]
A0A6J1EP67	2.52e-61	84.35	uncharacterized protein LOC111436449 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1EQE8	5.09e-61	84.35	calmodulin-like OS=Cucurbita moschata OX=3662 GN=LOC111436456 PE=4 SV=1	[more]
A0A6J1JZF1	8.41e-60	83.33	calmodulin-2/4-like OS=Cucurbita maxima OX=3661 GN=LOC111490224 PE=4 SV=1	[more]
A0A6J1EQF3	4.86e-59	81.74	calcium-binding protein CML38-like OS=Cucurbita moschata OX=3662 GN=LOC111436460...	[more]

BLAST of Cp4.1LG01g16980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50770.1	3.1e-04	31.43	calmodulin-like 41	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13405	EF-hand_6	coord: 70..96 e-value: 2.7E-5 score: 23.6
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 65..100 score: 12.225983
None	No IPR available	GENE3D	1.10.238.10		coord: 13..122 e-value: 1.2E-9 score: 40.3
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 78..90
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 61..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16980.1	Cp4.1LG01g16980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding