Cp4.1LG01g11280 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g11280
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein EARLY FLOWERING 4-like
Location	Cp4.1LG01: 6154760 .. 6155538 (-)
RNA-Seq Expression	Cp4.1LG01g11280
Synteny	Cp4.1LG01g11280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGTGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTTCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGGTTCAATAACAACAAATCCAGAAATGGCAAAAGAGGAAGCAGCAACCCAGATGCTTGACGAAGAATTCAAGCCACAGAAACAAAGAACAAAGAAAATAAAAAAAAAAAAAAAAAAAAAATCGCACCATCTCTGTAATAGGTGAATGCCTCTTTTTCCCCNGAATAAAAGGTGGGCAGTGGGTGGTTTGGAAATGCGAGAATGAAGAACTTCTCGCAGGTGGTGCGTGTATGTGTATGCTTTGTGGTGGTGTTTTTTTCTCATTAAAAATGTGTTTCCTCTTTCAAATGTAACAGTTAATGCATGCTTCCATCATCATCATCATCATCATGATTGTCAGAGTTCATTGTCTTCTTCTTCTTCTTACCTTCTCCCAAAAGATGGGAAACTTTTCTTATCAGCAGCGGAGGATAAAACAGAACATCATATGGGAAACAAAAGTGCTTTAG

mRNA sequence

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGTGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTTCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGAGTTCATTGTCTTCTTCTTCTTCTTACCTTCTCCCAAAAGATGGGAAACTTTTCTTATCAGCAGCGGAGGATAAAACAGAACATCATATGGGAAACAAAAGTGCTTTAG

Coding sequence (CDS)

ATGGCCGATATCAACCCCCGCCGCAAATCCAAAACCAAGCCTTCAGCCACCACCACCACCACAACCACAACCACCACCAGTGACGACGGCCGACACGACGGCTTCCCTGACGAATGCGACGCCCAGGTGTGGGCCTCCTTCGACCAGACCTTCCGCCAGGTTCAGTCAGTGCTGGACCGTAACAGAGTGCTGATTCAACAGGTGAACGAGAACCACCAGTCTCGAATTCCCAGCAACATGGTGGACAACGTGGCTCTCATCCAAGAACTCAATGGGAACATCTCTAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGACTTCTCCTCTGGAGTTCATTGTCTTCTTCTTCTTCTTACCTTCTCCCAAAAGATGGGAAACTTTTCTTATCAGCAGCGGAGGATAAAACAGAACATCATATGGGAAACAAAAGTGCTTTAG

Protein sequence

MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGVHCLLLLLTFSQKMGNFSYQQRRIKQNIIWETKVL

Homology

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-22
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYSDFSSDFSSGVH 114
           MYSD ++ FSSG H
Sbjct: 82  MYSDLNTSFSSGFH 95

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-14
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYSDFSSDFS 110
           +YSD S +F+
Sbjct: 94  IYSDLSLNFA 103

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 33/75 (44.00%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 38  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMYSDFSSDFSSGV 113
             +Y D S++FS  +
Sbjct: 75  AHLYVDLSNNFSKSM 89

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 34  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFSSGV 113
            NI +V S+Y D S  F+  V
Sbjct: 68  NNIRRVASLYGDLSHSFARSV 88

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.3e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 32  HDGFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQE 91
           + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 92  LNGNISKVVSMYSDFSSDFSSGV 113
           LN NI  V S+Y D S  F+  V
Sbjct: 70  LNNNIRTVASLYGDLSHSFARSV 92

[Close]

BLAST of Cp4.1LG01g11280 vs. NCBI nr
Match: KAG6600929.1 (Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031565.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214 bits (546), Expect = 3.82e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111

[Close]

BLAST of Cp4.1LG01g11280 vs. NCBI nr
Match: XP_022956860.1 (protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARLY FLOWERING 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214 bits (546), Expect = 3.82e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111

[Close]

BLAST of Cp4.1LG01g11280 vs. NCBI nr
Match: XP_022976942.1 (protein EARLY FLOWERING 4-like [Cucurbita maxima])

HSP 1 Score: 207 bits (528), Expect = 2.11e-66
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDR
Sbjct: 1   MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111

[Close]

BLAST of Cp4.1LG01g11280 vs. NCBI nr
Match: KAA0031907.1 (protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (492), Expect = 6.44e-61
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGVH 113
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+  H
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFH 113

[Close]

BLAST of Cp4.1LG01g11280 vs. NCBI nr
Match: XP_008463236.2 (PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo])

HSP 1 Score: 194 bits (492), Expect = 5.94e-60
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGVH 113
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+  H
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFH 182

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy TrEMBL
Match: A0A6J1GYX8 (protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 1.85e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy TrEMBL
Match: A0A6J1IH33 (protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 SV=1)

HSP 1 Score: 207 bits (528), Expect = 1.02e-66
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MA+IN RRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECD QVWASFDQTFRQVQSVLDR
Sbjct: 1   MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111
           NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSG 111

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy TrEMBL
Match: A0A5A7SR92 (Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00230 PE=3 SV=1)

HSP 1 Score: 194 bits (492), Expect = 3.12e-61
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGVH 113
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+  H
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFH 113

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy TrEMBL
Match: A0A1S3CIT1 (uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=3 SV=1)

HSP 1 Score: 194 bits (492), Expect = 2.88e-60
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DA+VWASFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGVH 113
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+  H
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFH 182

[Close]

BLAST of Cp4.1LG01g11280 vs. ExPASy TrEMBL
Match: A0A0A0KM35 (Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 SV=1)

HSP 1 Score: 190 bits (482), Expect = 1.04e-59
Identity = 100/113 (88.50%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D +VWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGVH 113
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+  H
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFH 113

[Close]

BLAST of Cp4.1LG01g11280 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-23
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYSDFSSDFSSGVH 114
           MYSD ++ FSSG H
Sbjct: 82  MYSDLNTSFSSGFH 95

[Close]

BLAST of Cp4.1LG01g11280 vs. TAIR 10
Match: AT2G29950.1 (ELF4-like 1 )

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 40  DAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D +VW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYSDFSSDFS 110
           +YSD S +F+
Sbjct: 94  IYSDLSLNFA 103

[Close]

BLAST of Cp4.1LG01g11280 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-14
Identity = 33/75 (44.00%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 38  ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMYSDFSSDFSSGV 113
             +Y D S++FS  +
Sbjct: 75  AHLYVDLSNNFSKSM 89

[Close]

BLAST of Cp4.1LG01g11280 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-14
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 34  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFSSGV 113
            NI +V S+Y D S  F+  V
Sbjct: 68  NNIRRVASLYGDLSHSFARSV 88

[Close]

BLAST of Cp4.1LG01g11280 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-14
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 34  GFPD--ECDAQVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFSSGV 113
            NI +V S+Y D S  F+  V
Sbjct: 68  NNIRRVASLYGDLSHSFARSV 88

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g11280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04211	1.7e-22	71.62	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	3.9e-14	54.29	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
Q8S8F5	1.5e-13	44.00	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	1.3e-12	45.68	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	5.3e-11	40.96	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]

BLAST of Cp4.1LG01g11280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600929.1	3.82e-69	100.00	Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_022956860.1	3.82e-69	100.00	protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARL...	[more]
XP_022976942.1	2.11e-66	97.30	protein EARLY FLOWERING 4-like [Cucurbita maxima]	[more]
KAA0031907.1	6.44e-61	90.27	protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY F...	[more]
XP_008463236.2	5.94e-60	90.27	PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]	[more]

BLAST of Cp4.1LG01g11280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYX8	1.85e-69	100.00	protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=...	[more]
A0A6J1IH33	1.02e-66	97.30	protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 ...	[more]
A0A5A7SR92	3.12e-61	90.27	Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CIT1	2.88e-60	90.27	uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=...	[more]
A0A0A0KM35	1.04e-59	88.50	Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 S...	[more]

BLAST of Cp4.1LG01g11280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40080.1	1.2e-23	71.62	Protein of unknown function (DUF1313)	[more]
AT2G29950.1	2.8e-15	54.29	ELF4-like 1	[more]
AT2G06255.1	1.1e-14	44.00	ELF4-like 3	[more]
AT1G17455.1	8.9e-14	45.68	ELF4-like 4	[more]
AT1G17455.2	8.9e-14	45.68	ELF4-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 39..113 e-value: 5.4E-36 score: 122.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..29
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 10..113
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 10..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g11280.1	Cp4.1LG01g11280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0042803	protein homodimerization activity