Cp4.1LG01g11140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g11140
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	GATA type zinc finger transcription factor family protein
Location	Cp4.1LG01: 6248709 .. 6251361 (+)
RNA-Seq Expression	Cp4.1LG01g11140
Synteny	Cp4.1LG01g11140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTTCACAGCGAGCTACTTCCACAGAAAATCCTCGCCGGTGCACACTTCTCATTTTCATATTTAGTAAAATCCAACTTAAAATCACCTTTTTAAATTCAGTAATTCAAATCTATATATTTAATTTTTTATTCAAAAAAATAGAGATACTGACTATTTATTAGGTGTCTGATTTATGTTCATTTCATGTTTAGTCTCAAAATTATTATTCGATTTAAATTACAATCCTAAAAAATTTGTGTTCAAATTGGTATGATATGTTCTTGAATTTAATTTTGTGTTTAACTGAAGAGTTTGTCACCATAATTATGAACTAATTGAGAGTTTATACAAAATCATCCAAATACGATCCATGCCTAGACGAGAGAAGGGTGAAGGCTAAATTAGAAATACAAAGAGACAAAACGACACGTCGTTACTCTGCAGGATGCCGACGGTGGAGTTTCAGTGGTACTGAAAAAGTTGAAGAAGAAAGTAGCACCGGGACGGAGTAAAGTTGAAGCAAGCAATGTGTGTCTTTCCGGNAATCGACGCTGTGAATAATGTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAATACATTCTCTGCATTTTGTTCCTTCTATCATTTGAGGCACCCATCTTCAGTTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTGGGTTTGATCCTATTCTCCACTAGATTTTCAAGTGTTTTAGTTTAAGCTCATCGATTTAATTTTCTGAGATTCTCAGATTATTTGCCTGCAGCTTCTTGTTTTGTCTTCTGAATTTGATCTGGGTTTTTGCGTATTGGTTGTGTTTGATGAAATGACATCAGGAGAAAGGAGGTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGAATAGTCGGATCTACTCTAAGGCTTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGGTACGTCACTTAAGCTTTGATGTACATGATTACTGAGCACTTTTATGGGTCAGAATGTGAGAACTTTTCTAAAATGATTTGTTAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTAGTATGTTCCGAACTTTGTCGAATTTAGAAGACACTCTACATCATGGATCTTGTAGCTATCGCTTTCTACTAACATTTTCTGTACTTCTCTTTTTCTACAGCTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGGTAAATTTAAACCCAATGCTGCAATTAGTTGTGATTGAATTTATAAACAGCCTGCTCATACCGTAGCCTCTTGTTGGTTCCAGACTAGGACACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAAAAGACATTAAAAAGATATTCAAATATTTAAAACCCTCTTAATCACATCAATAGTCAATTTTCACTCTCTATTTGAACTGTCTGTGCATATATATGATGAACCGAATTATCTTCTTGGGGTCGTTTGAATTTGTTTTGCATACCATTGTTTCAACATGAACATATCGACCTCTATAAGAAAGGGATATTCTTTAAAGCTACTGCATCTAAATGAGTTGGTTTTCTGAATGGCTTGAATGTGGCTCTTGTTTGAGCCAATTAGAGAACTGATGATATATAAGCTTTGAGGAACTGTGGAAGTTACATGTTCTTAGTTTTCTTTATCTATAGTAATTCCTGCTGACATAGAAATGGTTCCATCTCAATTTTGAAGTACTTTTGTTGGTATTGGCACTTTGTATGCATCAGTGCTGCTGTTATTTTATCTGCCGGGCATTGCTTGTTTGCAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCCCATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCAGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTAAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTCCCTCTGCTTTCCCCCTTCCCCACCCAGTGTGTTCTACTTTGTTCCTCACGGTTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGATGAGCCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCATTTTGCAACTGTTAGTTTTGGGTTAGTACAAAATAGATATGGAGTCATTCTGTAACCTGCTGAATTATTCTTAGTTTCATGTTGACCAGTACTTCAATTGGTCTAGAAAAGAGTTTCACTTT

mRNA sequence

CTGTTCACAGCGAGCTACTTCCACAGAAAATCCTCGCCGGTGCACACTTCTCATTTTCATATTTAGTAAAATCCAACTTAAAATCACCTTTTTAAATTCAGTAATTCAAATCTATATATTTAATTTTTTATTCAAAAAAATAGAGATACTGACTATTTATTAGGTGTCTGATTTATGTTCATTTCATGTTTAGTCTCAAAATTATTATTCGATTTAAATTACAATCCTAAAAAATTTGTGTTCAAATTGGTATGATATGTTCTTGAATTTAATTTTGTGTTTAACTGAAGAGTTTGTCACCATAATTATGAACTAATTGAGAGTTTATACAAAATCATCCAAATACGATCCATGCCTAGACGAGAGAAGGGTGAAGGCTAAATTAGAAATACAAAGAGACAAAACGACACGTCGTTACTCTGCAGGATGCCGACGGTGGAGTTTCAGTGGTACTGAAAAAGTTGAAGAAGAAAGTAGCACCGGGACGGAGTAAAGTTGAAGCAAGCAATGTGTGTCTTTCCGGNAATCGACGCTGTGAATAATGTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAATACATTCTCTGCATTTTGTTCCTTCTATCATTTGAGGCACCCATCTTCAGTTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTGGGAGAAAGGAGGTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGAATAGTCGGATCTACTCTAAGGCTTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGACACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCCCATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCAGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTAAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTCCCTCTGCTTTCCCCCTTCCCCACCCAGTGTGTTCTACTTTGTTCCTCACGGTTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGATGAGCCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCATTTTGCAACTGTTAGTTTTGGGTTAGTACAAAATAGATATGGAGTCATTCTGTAACCTGCTGAATTATTCTTAGTTTCATGTTGACCAGTACTTCAATTGGTCTAGAAAAGAGTTTCACTTT

Coding sequence (CDS)

ATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGACACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCCCATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCAGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTAA

Protein sequence

MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDT

Homology

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.6e-87
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTRTPS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.2e-86
Identity = 146/187 (78.07%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK+CFKCSHC   L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKS-SEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLE 120
           HFEQLFKE+G+FSKNF S AK  ++KPTPEL RTPS+ A MFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRQVATS 187
           KR  A +
Sbjct: 181 KRATAAA 187

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.5e-71
Identity = 122/186 (65.59%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY +D L+ +G  +HKSCF+C+HC GTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GN+SKNF   A  +EKP   LTRTPSK +S FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+ ++A   
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RQVATS 187
           R+ A+S
Sbjct: 181 RRSASS 184

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.1e-68
Identity = 112/181 (61.88%), Postives = 147/181 (81.22%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY VD LS +G+ +HKSCF+C+HC GTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GNFSKNF    +  +   PELTRTPSK +S+F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF----QPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           + +E + +HK+CF+C+HGGC+L+ S+YA+LD +LYC+HHF+QLF EKG+Y H++++A  +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 177

Query: 181 R 182
           R
Sbjct: 181 R 177

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.0e-67
Identity = 117/177 (66.10%), Postives = 141/177 (79.66%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ +D L+ADGV +HK+CFKCSHC G L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE G+FSK F    +S++K   EL R PSK  S FSGTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA 178
           +T+E ++YHKSCFKCSHGGC L+ S+YAAL+G+LYCK HF QLF EKGSYNH+ K +
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKS 174

[Close]

BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: XP_023549296.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303.1 LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399 bits (1024), Expect = 2.44e-140
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: KAG7031583.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397 bits (1020), Expect = 3.88e-139
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 217 RQVATSDPDT 226

[Close]

BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: XP_022957291.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM domain-containing protein WLIM2b [Cucurbita moschata])

HSP 1 Score: 395 bits (1015), Expect = 6.90e-139
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: KAG6600951.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397 bits (1020), Expect = 1.95e-137
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 228 RQVATSDPDT 237

[Close]

BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: XP_022987406.1 (LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM domain-containing protein WLIM2b [Cucurbita maxima])

HSP 1 Score: 390 bits (1002), Expect = 6.63e-137
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 395 bits (1015), Expect = 3.34e-139
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A6J1JGT3 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962 PE=4 SV=1)

HSP 1 Score: 390 bits (1002), Expect = 3.21e-137
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDT 190
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 382 bits (980), Expect = 7.26e-134
Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQVATSDPD 189
           RQ ATSDPD
Sbjct: 181 RQAATSDPD 189

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 379 bits (974), Expect = 5.97e-133
Identity = 180/189 (95.24%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKS++KPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQVATSDPD 189
           RQ ATS PD
Sbjct: 181 RQAATSVPD 189

[Close]

BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 376 bits (965), Expect = 1.41e-131
Identity = 177/189 (93.65%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTR+PS+AASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL+GILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQVATSDPD 189
           RQ ATSD D
Sbjct: 181 RQAATSDSD 189

[Close]

BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTRTPS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTRTPS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTRTPS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTRTPS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88
Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTRTPS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	2.6e-87	79.57	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	2.2e-86	78.07	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	3.5e-71	65.59	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	6.1e-68	61.88	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q7F9R9	1.0e-67	66.10	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Cp4.1LG01g11140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549296.1	2.44e-140	100.00	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303....	[more]
KAG7031583.1	3.88e-139	99.47	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022957291.1	6.90e-139	98.95	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM do...	[more]
KAG6600951.1	1.95e-137	99.47	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022987406.1	6.63e-137	98.42	LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM doma...	[more]

BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYT7	3.34e-139	98.95	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A6J1JGT3	3.21e-137	98.42	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962...	[more]
A0A0A0KQF5	7.26e-134	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1	[more]
A0A6J1DT64	5.97e-133	95.24	LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A1S3CIM8	1.41e-131	93.65	LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141...	[more]

BLAST of Cp4.1LG01g11140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	1.9e-88	79.57	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.9e-88	79.57	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.9e-88	79.57	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	1.9e-88	79.57	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	1.9e-88	79.57	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 4.8E-13 score: 59.3 coord: 107..159 e-value: 4.7E-12 score: 56.0
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..65 e-value: 1.1E-11 score: 44.7 coord: 108..163 e-value: 1.3E-10 score: 41.3
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.5434
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.573
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 102..172 e-value: 1.0E-19 score: 72.4 coord: 4..74 e-value: 7.6E-21 score: 76.1
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..186
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..186
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 1.18364E-35 score: 117.571
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.64239E-41 score: 132.589
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g11140.1	Cp4.1LG01g11140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding