Cp4.1LG01g11140 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGTTCACAGCGAGCTACTTCCACAGAAAATCCTCGCCGGTGCACACTTCTCATTTTCATATTTAGTAAAATCCAACTTAAAATCACCTTTTTAAATTCAGTAATTCAAATCTATATATTTAATTTTTTATTCAAAAAAATAGAGATACTGACTATTTATTAGGTGTCTGATTTATGTTCATTTCATGTTTAGTCTCAAAATTATTATTCGATTTAAATTACAATCCTAAAAAATTTGTGTTCAAATTGGTATGATATGTTCTTGAATTTAATTTTGTGTTTAACTGAAGAGTTTGTCACCATAATTATGAACTAATTGAGAGTTTATACAAAATCATCCAAATACGATCCATGCCTAGACGAGAGAAGGGTGAAGGCTAAATTAGAAATACAAAGAGACAAAACGACACGTCGTTACTCTGCAGGATGCCGACGGTGGAGTTTCAGTGGTACTGAAAAAGTTGAAGAAGAAAGTAGCACCGGGACGGAGTAAAGTTGAAGCAAGCAATGTGTGTCTTTCCGGNAATCGACGCTGTGAATAATGTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAATACATTCTCTGCATTTTGTTCCTTCTATCATTTGAGGCACCCATCTTCAGTTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTGGGTTTGATCCTATTCTCCACTAGATTTTCAAGTGTTTTAGTTTAAGCTCATCGATTTAATTTTCTGAGATTCTCAGATTATTTGCCTGCAGCTTCTTGTTTTGTCTTCTGAATTTGATCTGGGTTTTTGCGTATTGGTTGTGTTTGATGAAATGACATCAGGAGAAAGGAGGTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGAATAGTCGGATCTACTCTAAGGCTTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGGTACGTCACTTAAGCTTTGATGTACATGATTACTGAGCACTTTTATGGGTCAGAATGTGAGAACTTTTCTAAAATGATTTGTTAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTAGTATGTTCCGAACTTTGTCGAATTTAGAAGACACTCTACATCATGGATCTTGTAGCTATCGCTTTCTACTAACATTTTCTGTACTTCTCTTTTTCTACAGCTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGGTAAATTTAAACCCAATGCTGCAATTAGTTGTGATTGAATTTATAAACAGCCTGCTCATACCGTAGCCTCTTGTTGGTTCCAGACTAGGACACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAAAAGACATTAAAAAGATATTCAAATATTTAAAACCCTCTTAATCACATCAATAGTCAATTTTCACTCTCTATTTGAACTGTCTGTGCATATATATGATGAACCGAATTATCTTCTTGGGGTCGTTTGAATTTGTTTTGCATACCATTGTTTCAACATGAACATATCGACCTCTATAAGAAAGGGATATTCTTTAAAGCTACTGCATCTAAATGAGTTGGTTTTCTGAATGGCTTGAATGTGGCTCTTGTTTGAGCCAATTAGAGAACTGATGATATATAAGCTTTGAGGAACTGTGGAAGTTACATGTTCTTAGTTTTCTTTATCTATAGTAATTCCTGCTGACATAGAAATGGTTCCATCTCAATTTTGAAGTACTTTTGTTGGTATTGGCACTTTGTATGCATCAGTGCTGCTGTTATTTTATCTGCCGGGCATTGCTTGTTTGCAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCCCATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCAGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTAAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTCCCTCTGCTTTCCCCCTTCCCCACCCAGTGTGTTCTACTTTGTTCCTCACGGTTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGATGAGCCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCATTTTGCAACTGTTAGTTTTGGGTTAGTACAAAATAGATATGGAGTCATTCTGTAACCTGCTGAATTATTCTTAGTTTCATGTTGACCAGTACTTCAATTGGTCTAGAAAAGAGTTTCACTTT CTGTTCACAGCGAGCTACTTCCACAGAAAATCCTCGCCGGTGCACACTTCTCATTTTCATATTTAGTAAAATCCAACTTAAAATCACCTTTTTAAATTCAGTAATTCAAATCTATATATTTAATTTTTTATTCAAAAAAATAGAGATACTGACTATTTATTAGGTGTCTGATTTATGTTCATTTCATGTTTAGTCTCAAAATTATTATTCGATTTAAATTACAATCCTAAAAAATTTGTGTTCAAATTGGTATGATATGTTCTTGAATTTAATTTTGTGTTTAACTGAAGAGTTTGTCACCATAATTATGAACTAATTGAGAGTTTATACAAAATCATCCAAATACGATCCATGCCTAGACGAGAGAAGGGTGAAGGCTAAATTAGAAATACAAAGAGACAAAACGACACGTCGTTACTCTGCAGGATGCCGACGGTGGAGTTTCAGTGGTACTGAAAAAGTTGAAGAAGAAAGTAGCACCGGGACGGAGTAAAGTTGAAGCAAGCAATGTGTGTCTTTCCGGNAATCGACGCTGTGAATAATGTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAATACATTCTCTGCATTTTGTTCCTTCTATCATTTGAGGCACCCATCTTCAGTTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTGGGAGAAAGGAGGTTGTTTGATTGGGATAGCTTGGTGGCTTTGAATTGGAGGAGATTCTGGTTGGTTGAGAATAGTCGGATCTACTCTAAGGCTTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGACACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCCCATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCAGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTAAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTCCCTCTGCTTTCCCCCTTCCCCACCCAGTGTGTTCTACTTTGTTCCTCACGGTTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGATGAGCCAAATTGTTTATTTGCTTGATTCATGGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCATTTTGCAACTGTTAGTTTTGGGTTAGTACAAAATAGATATGGAGTCATTCTGTAACCTGCTGAATTATTCTTAGTTTCATGTTGACCAGTACTTCAATTGGTCTAGAAAAGAGTTTCACTTT ATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAATGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGACACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCCCATGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCAGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTAA MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDT Homology
BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 2.6e-87 Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 2.2e-86 Identity = 146/187 (78.07%), Postives = 167/187 (89.30%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 3.5e-71 Identity = 122/186 (65.59%), Postives = 153/186 (82.26%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 6.1e-68 Identity = 112/181 (61.88%), Postives = 147/181 (81.22%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 1.0e-67 Identity = 117/177 (66.10%), Postives = 141/177 (79.66%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: XP_023549296.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303.1 LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]) HSP 1 Score: 399 bits (1024), Expect = 2.44e-140 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: KAG7031583.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 397 bits (1020), Expect = 3.88e-139 Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: XP_022957291.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM domain-containing protein WLIM2b [Cucurbita moschata]) HSP 1 Score: 395 bits (1015), Expect = 6.90e-139 Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: KAG6600951.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 397 bits (1020), Expect = 1.95e-137 Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. NCBI nr
Match: XP_022987406.1 (LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM domain-containing protein WLIM2b [Cucurbita maxima]) HSP 1 Score: 390 bits (1002), Expect = 6.63e-137 Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1) HSP 1 Score: 395 bits (1015), Expect = 3.34e-139 Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A6J1JGT3 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962 PE=4 SV=1) HSP 1 Score: 390 bits (1002), Expect = 3.21e-137 Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1) HSP 1 Score: 382 bits (980), Expect = 7.26e-134 Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1) HSP 1 Score: 379 bits (974), Expect = 5.97e-133 Identity = 180/189 (95.24%), Postives = 183/189 (96.83%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1) HSP 1 Score: 376 bits (965), Expect = 1.41e-131 Identity = 177/189 (93.65%), Postives = 183/189 (96.83%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88 Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88 Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88 Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88 Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0
BLAST of Cp4.1LG01g11140 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein ) HSP 1 Score: 322.8 bits (826), Expect = 1.9e-88 Identity = 148/186 (79.57%), Postives = 165/186 (88.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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