Cp4.1LG01g08660 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g08660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Pentatricopeptide repeat
Location	Cp4.1LG01: 4816016 .. 4817962 (-)
RNA-Seq Expression	Cp4.1LG01g08660
Synteny	Cp4.1LG01g08660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTATACCGCCTCCTCCTCCGCTCTCTCCGCCGCACTTCAACCTCGCCATCGCATTCTCGAGCTCTGAGCATTGGTCCTCTCAGTCAACATCTGCAGACCCCGATTCTTCCATCCTCGCAAAGCTCTTCTCTTATTTCGCTTCTCCATGCCCGCTCATTTGCTTTTTCCTCCGCCGAAGAAGCTGCTGCCGAAAGACGCCGTAGAAAGCGCCGTCTTCGTATCGAACCCCCTCTCCATGCTCTTCGCCGCGACAACTATCCGCCCCCTCAGCGTGATCCTAATGCTCCTCGTCTTCCTGACTCCACATCCGCTCTTGTGGGGCCTCGTCTGAGCCTTCACAATCGTGTTCAATCCCTAATTCGTGCCGGTGATCTTGATGCGGCTTCTGCTGTCGCTCGCCACTCTGTGTTCTCGAACACCCGGCCCACGGTTTTCACTTGTAACGCTATTATTGCTGCCATGTATCGGGCCAAGAGGTATGGTGATGCGATTGCACTGTTTCAGTTCTTCTTTAACCAGTCGAATATAGTTCCCAATGTTGTGTCGTATAATAATTTGATTAATGCTCATTGCGATGAGGGTCGTGTTGATGTGGGTCTTGAGATTTATCGCCATATTATTGCAAATGCTCCGTTTAGTCCTTCGGCAGTAACTTATCGGCATTTGACCAAGGGATTGATTGATTCTGGGAGGATTGGGGAGGCTGTGGATCTTCTGCGGGAAATGTTGAATAAAGGGCATGGGGCTGATTCGTTGGTTTATAATAATTTGATTTCCGGGTTTCTAAATTTGGAGAATTTGGAGAAGGCGAATGAACTGTTTGATGAGTTGAAGGAGAGGTGTTTGGTGTATGATGGAGTTGTGAATGCTACGTTCATGGATTGGTTCTTTAATAAGGGGAAAGCAAAGGAGGCCATGGAATCGTACAAGTCATTGCTTGATAGGCAATTCAAGATGATTCCAGCCACTTGCAATGTGCTGTTGGAGGTTTTGCTCAAGCATGGGAAGAAAACGGAGGCTTGGACCTTATTTGATCAGATGTTGGATAATCACACTCCTCCAAATTTCCAAGCAGTCAATTCAGACACGTTTAACATAATGGTTAATGAGTGCTTTAAGCTTGGTAAGTTCTCAGAAGCAGTAGAGACTTTCCGGAAGGTGGGAACTCAACCAAAGTCGAGGCCTTTTGCGATGGACGTTGCAGGGTATAACAATATTATTGTAAGGTTTTGTGAGCATGGAATGATGGAAGATGCAGAGACTTTCTTTGCTGAGCTTTGCTCGAAGTCCTTGTCCCCTGATGTCCCAACTCATAGGACATTGATCGAAGCTTATTTAAAGCTTGAGCAGATTGATGATGTATTGAAAGTTTTCAACAGAATGGTCGATGTAGGTTTGAGAGTCGTAGCTAGCTTCGGAAACAGGGTATTTGGCGAATTGATTAAGAATGGCAAGGCAGTTGAATGTGCTCAGATTTTAACAAAAATGGGAGAGAGGGATCCTAAACCAGATCCCACATGCTATGATGTGGTGATTAGAGGGCTATGTAATGAAGGTGCTCTCGATGCTAGTCGGATGTTGCTTGACCAGGTAATGAGGTACGGTATTGGCCTCACTCCCTCACTTCAGGAATTTGTTAAAGAGGTATTTGTAAAGGCCGGCCGGAATGAAGAGATTGAAAGACTGTTAATGATGAACAGAGGGGGACATGCCCCTTATCGCCCCACGTCTGGACCCCCAAGAATTTCACAATCGCAGGTCCCTCAATTTAGAGGAAGTTACGGCCCTTCAGCACCTCAAATGACAGGCCCCAACTATTTTCAATCAGGATCAGTTCAAATGACAAGACCACAACAGCCATCATCAGGTCCACCGCCTTCAATGGAAAAACAGCAGCAGCATTCACAACCCCCCCAAATGGCTGGGCAGGCAGTAGCTTGA

mRNA sequence

ATGTCACTATACCGCCTCCTCCTCCGCTCTCTCCGCCGCACTTCAACCTCGCCATCGCATTCTCGAGCTCTGAGCATTGGTCCTCTCAGTCAACATCTGCAGACCCCGATTCTTCCATCCTCGCAAAGCTCTTCTCTTATTTCGCTTCTCCATGCCCGCTCATTTGCTTTTTCCTCCGCCGAAGAAGCTGCTGCCGAAAGACGCCGTAGAAAGCGCCGTCTTCGTATCGAACCCCCTCTCCATGCTCTTCGCCGCGACAACTATCCGCCCCCTCAGCGTGATCCTAATGCTCCTCGTCTTCCTGACTCCACATCCGCTCTTGTGGGGCCTCGTCTGAGCCTTCACAATCGTGTTCAATCCCTAATTCGTGCCGGTGATCTTGATGCGGCTTCTGCTGTCGCTCGCCACTCTGTGTTCTCGAACACCCGGCCCACGGTTTTCACTTGTAACGCTATTATTGCTGCCATGTATCGGGCCAAGAGGTATGGTGATGCGATTGCACTGTTTCAGTTCTTCTTTAACCAGTCGAATATAGTTCCCAATGTTGTGTCGTATAATAATTTGATTAATGCTCATTGCGATGAGGGTCGTGTTGATGTGGGTCTTGAGATTTATCGCCATATTATTGCAAATGCTCCGTTTAGTCCTTCGGCAGTAACTTATCGGCATTTGACCAAGGGATTGATTGATTCTGGGAGGATTGGGGAGGCTGTGGATCTTCTGCGGGAAATGTTGAATAAAGGGCATGGGGCTGATTCGTTGGTTTATAATAATTTGATTTCCGGGTTTCTAAATTTGGAGAATTTGGAGAAGGCGAATGAACTGTTTGATGAGTTGAAGGAGAGGTGTTTGGTGTATGATGGAGTTGTGAATGCTACGTTCATGGATTGGTTCTTTAATAAGGGGAAAGCAAAGGAGGCCATGGAATCGTACAAGTCATTGCTTGATAGGCAATTCAAGATGATTCCAGCCACTTGCAATGTGCTGTTGGAGGTTTTGCTCAAGCATGGGAAGAAAACGGAGGCTTGGACCTTATTTGATCAGATGTTGGATAATCACACTCCTCCAAATTTCCAAGCAGTCAATTCAGACACGTTTAACATAATGGTTAATGAGTGCTTTAAGCTTGGTAAGTTCTCAGAAGCAGTAGAGACTTTCCGGAAGGTGGGAACTCAACCAAAGTCGAGGCCTTTTGCGATGGACGTTGCAGGGTATAACAATATTATTGTAAGGTTTTGTGAGCATGGAATGATGGAAGATGCAGAGACTTTCTTTGCTGAGCTTTGCTCGAAGTCCTTGTCCCCTGATGTCCCAACTCATAGGACATTGATCGAAGCTTATTTAAAGCTTGAGCAGATTGATGATGTATTGAAAGTTTTCAACAGAATGGTCGATGTAGGTTTGAGAGTCGTAGCTAGCTTCGGAAACAGGGTATTTGGCGAATTGATTAAGAATGGCAAGGCAGTTGAATGTGCTCAGATTTTAACAAAAATGGGAGAGAGGGATCCTAAACCAGATCCCACATGCTATGATGTGGTGATTAGAGGGCTATGTAATGAAGGTGCTCTCGATGCTAGTCGGATGTTGCTTGACCAGGTAATGAGGTACGGTATTGGCCTCACTCCCTCACTTCAGGAATTTGTTAAAGAGGTATTTGTAAAGGCCGGCCGGAATGAAGAGATTGAAAGACTGTTAATGATGAACAGAGGGGGACATGCCCCTTATCGCCCCACGTCTGGACCCCCAAGAATTTCACAATCGCAGGTCCCTCAATTTAGAGGAAGTTACGGCCCTTCAGCACCTCAAATGACAGGCCCCAACTATTTTCAATCAGGATCAGTTCAAATGACAAGACCACAACAGCCATCATCAGGTCCACCGCCTTCAATGGAAAAACAGCAGCAGCATTCACAACCCCCCCAAATGGCTGGGCAGGCAGTAGCTTGA

Coding sequence (CDS)

ATGTCACTATACCGCCTCCTCCTCCGCTCTCTCCGCCGCACTTCAACCTCGCCATCGCATTCTCGAGCTCTGAGCATTGGTCCTCTCAGTCAACATCTGCAGACCCCGATTCTTCCATCCTCGCAAAGCTCTTCTCTTATTTCGCTTCTCCATGCCCGCTCATTTGCTTTTTCCTCCGCCGAAGAAGCTGCTGCCGAAAGACGCCGTAGAAAGCGCCGTCTTCGTATCGAACCCCCTCTCCATGCTCTTCGCCGCGACAACTATCCGCCCCCTCAGCGTGATCCTAATGCTCCTCGTCTTCCTGACTCCACATCCGCTCTTGTGGGGCCTCGTCTGAGCCTTCACAATCGTGTTCAATCCCTAATTCGTGCCGGTGATCTTGATGCGGCTTCTGCTGTCGCTCGCCACTCTGTGTTCTCGAACACCCGGCCCACGGTTTTCACTTGTAACGCTATTATTGCTGCCATGTATCGGGCCAAGAGGTATGGTGATGCGATTGCACTGTTTCAGTTCTTCTTTAACCAGTCGAATATAGTTCCCAATGTTGTGTCGTATAATAATTTGATTAATGCTCATTGCGATGAGGGTCGTGTTGATGTGGGTCTTGAGATTTATCGCCATATTATTGCAAATGCTCCGTTTAGTCCTTCGGCAGTAACTTATCGGCATTTGACCAAGGGATTGATTGATTCTGGGAGGATTGGGGAGGCTGTGGATCTTCTGCGGGAAATGTTGAATAAAGGGCATGGGGCTGATTCGTTGGTTTATAATAATTTGATTTCCGGGTTTCTAAATTTGGAGAATTTGGAGAAGGCGAATGAACTGTTTGATGAGTTGAAGGAGAGGTGTTTGGTGTATGATGGAGTTGTGAATGCTACGTTCATGGATTGGTTCTTTAATAAGGGGAAAGCAAAGGAGGCCATGGAATCGTACAAGTCATTGCTTGATAGGCAATTCAAGATGATTCCAGCCACTTGCAATGTGCTGTTGGAGGTTTTGCTCAAGCATGGGAAGAAAACGGAGGCTTGGACCTTATTTGATCAGATGTTGGATAATCACACTCCTCCAAATTTCCAAGCAGTCAATTCAGACACGTTTAACATAATGGTTAATGAGTGCTTTAAGCTTGGTAAGTTCTCAGAAGCAGTAGAGACTTTCCGGAAGGTGGGAACTCAACCAAAGTCGAGGCCTTTTGCGATGGACGTTGCAGGGTATAACAATATTATTGTAAGGTTTTGTGAGCATGGAATGATGGAAGATGCAGAGACTTTCTTTGCTGAGCTTTGCTCGAAGTCCTTGTCCCCTGATGTCCCAACTCATAGGACATTGATCGAAGCTTATTTAAAGCTTGAGCAGATTGATGATGTATTGAAAGTTTTCAACAGAATGGTCGATGTAGGTTTGAGAGTCGTAGCTAGCTTCGGAAACAGGGTATTTGGCGAATTGATTAAGAATGGCAAGGCAGTTGAATGTGCTCAGATTTTAACAAAAATGGGAGAGAGGGATCCTAAACCAGATCCCACATGCTATGATGTGGTGATTAGAGGGCTATGTAATGAAGGTGCTCTCGATGCTAGTCGGATGTTGCTTGACCAGGTAATGAGGTACGGTATTGGCCTCACTCCCTCACTTCAGGAATTTGTTAAAGAGGTATTTGTAAAGGCCGGCCGGAATGAAGAGATTGAAAGACTGTTAATGATGAACAGAGGGGGACATGCCCCTTATCGCCCCACGTCTGGACCCCCAAGAATTTCACAATCGCAGGTCCCTCAATTTAGAGGAAGTTACGGCCCTTCAGCACCTCAAATGACAGGCCCCAACTATTTTCAATCAGGATCAGTTCAAATGACAAGACCACAACAGCCATCATCAGGTCCACCGCCTTCAATGGAAAAACAGCAGCAGCATTCACAACCCCCCCAAATGGCTGGGCAGGCAGTAGCTTGA

Protein sequence

MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSAEEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQSLIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFNKGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFGELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGLTPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSAPQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA

Homology

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BLAST of Cp4.1LG01g08660 vs. ExPASy Swiss-Prot
Match: Q9SY69 (Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana OX=3702 GN=GRP23 PE=1 SV=1)

HSP 1 Score: 741.1 bits (1912), Expect = 1.1e-212
Identity = 388/616 (62.99%), Postives = 467/616 (75.81%), Query Frame = 0


Query: 53  RSFAFSSAEEAAAERRRRKRRLRIEPPLHALRRD-NYPPPQRDPNAPRLPDSTSALVGPR 112
           R+ AFSSAEEAAAERRRRKRRLRIEPPLHALRRD + PPP+RDPNAPRLPDSTSALVG R
Sbjct: 86  RTMAFSSAEEAAAERRRRKRRLRIEPPLHALRRDPSAPPPKRDPNAPRLPDSTSALVGQR 145

Query: 113 LSLHNRVQSLIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQF 172
           L+LHNRVQSLIRA DLDAAS +AR SVFSNTRPTVFTCNAIIAAMYRAKRY ++I+LFQ+
Sbjct: 146 LNLHNRVQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQY 205

Query: 173 FFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDS 232
           FF QSNIVPNVVSYN +INAHCDEG VD  LE+YRHI+ANAPF+PS+VTYRHLTKGL+ +
Sbjct: 206 FFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQA 265

Query: 233 GRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVN 292
           GRIG+A  LLREML+KG  ADS VYNNLI G+L+L + +KA E FDELK +C VYDG+VN
Sbjct: 266 GRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVN 325

Query: 293 ATFMDWFFNKGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLD 352
           ATFM+++F KG  KEAMESY+SLLD++F+M P T NVLLEV LK GKK EAW LF++MLD
Sbjct: 326 ATFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLD 385

Query: 353 NHTPPNFQAVNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVR 412
           NH PPN  +VNSDT  IMVNECFK+G+FSEA+ TF+KVG++  S+PF MD  GY NI+ R
Sbjct: 386 NHAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTR 445

Query: 413 FCEHGMMEDAETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVV 472
           FCE GM+ +AE FFAE  S+SL  D P+HR +I+AYLK E+IDD +K+ +RMVDV LRVV
Sbjct: 446 FCEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVV 505

Query: 473 ASFGNRVFGELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLD 532
           A FG RVFGELIKNGK  E A++LTKMGER+PKPDP+ YDVV+RGLC+  ALD ++ ++ 
Sbjct: 506 ADFGARVFGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDIVG 565

Query: 533 QVMRYGIGLTPSLQEFVKEVFVKAGRNEEIERLL------MMNRGGH------------- 592
           +++R+ +G+T  L+EF+ EVF KAGR EEIE++L      + N G               
Sbjct: 566 EMIRHNVGVTTVLREFIIEVFEKAGRREEIEKILNSVARPVRNAGQSGNTPPRVPAVFGT 625

Query: 593 ---APYRPTSGPPRISQSQVPQFRGSYGPSAPQMTGPNYFQSGSVQMTRPQQPSSGPPPS 646
              AP +P    P  SQ  V    G    +A Q  G      G+ +    Q PS     +
Sbjct: 626 TPAAPQQPRDRAPWTSQGVVHSNSGWANGTAGQTAG------GAYKANNGQNPSWS--NT 685

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy Swiss-Prot
Match: Q9M3A8 (Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=EMB1796 PE=1 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.6e-91
Identity = 207/555 (37.30%), Postives = 313/555 (56.40%), Query Frame = 0


Query: 23  ALSIGPLSQHLQTPILPSSQSSSLI--SLLHARSFAFSSAEEAAAERRRRKRRLRIEPPL 82
           ++S      HLQT  L  S    ++    L  R  +F++ EEAAAERRRRKRRLR+EPP+
Sbjct: 2   SISKAAFLNHLQT--LSRSYRHRVLPQPFLAVRYMSFATQEEAAAERRRRKRRLRMEPPV 61

Query: 83  HALRR-----DNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQSLIRAGDLDAASAVAR 142
           ++  R        P P ++PN P+LP+S SALVG RL LHN +  LIR  DL+ A+   R
Sbjct: 62  NSFNRSQQQQSQIPRPIQNPNIPKLPESVSALVGKRLDLHNHILKLIRENDLEEAALYTR 121

Query: 143 HSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVPNVVSYNNLINAHCDE 202
           HSV+SN RPT+FT N ++AA  R  +YG A+     F NQ+ I PN+++YN +  A+ D 
Sbjct: 122 HSVYSNCRPTIFTVNTVLAAQLRQAKYG-ALLQLHGFINQAGIAPNIITYNLIFQAYLDV 181

Query: 203 GRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLV 262
            + ++ LE Y+  I NAP +PS  T+R L KGL+ +  + +A+++  +M  KG   D +V
Sbjct: 182 RKPEIALEHYKLFIDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVV 241

Query: 263 YNNLISGFLNLENLEKANELFDELKERC--LVYDGVVNATFMDWFFNKGKAKEAMESYKS 322
           Y+ L+ G +   + +   +L+ ELKE+    V DGVV    M  +F K   KEAME Y+ 
Sbjct: 242 YSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEE 301

Query: 323 LL--DRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVN 382
            +  + + +M     N +LE L ++GK  EA  LFD +   H PP   AVN  TFN+MVN
Sbjct: 302 AVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVN 361

Query: 383 ECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSK 442
                GKF EA+E FR++G   K  P   D   +NN++ + C++ ++ +AE  + E+  K
Sbjct: 362 GYCAGGKFEEAMEVFRQMG-DFKCSP---DTLSFNNLMNQLCDNELLAEAEKLYGEMEEK 421

Query: 443 SLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFGELIKNGKAVEC 502
           ++ PD  T+  L++   K  +ID+    +  MV+  LR   +  NR+  +LIK GK  + 
Sbjct: 422 NVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA 481

Query: 503 AQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYG-IGLTPSLQEFVKE 562
                 M  +  K D   Y  ++R L   G LD    ++D+++    + ++  LQEFVKE
Sbjct: 482 KSFFDMMVSK-LKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKE 541

Query: 563 VFVKAGRNEEIERLL 566
              K GR  ++E+L+
Sbjct: 542 ELRKGGREGDLEKLM 548

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy Swiss-Prot
Match: Q9LEX6 (Pentatricopeptide repeat-containing protein At3g60960, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g60960 PE=2 SV=2)

HSP 1 Score: 232.6 bits (592), Expect = 1.2e-59
Identity = 152/402 (37.81%), Postives = 222/402 (55.22%), Query Frame = 0


Query: 90  PPQRDPNA-PRL-PDSTSALVGPRLSLHNRVQSLIRAGDLDAASAVARHSV---FSNTRP 149
           P  RDP++ P+L P S S +    +SL  RV+++I   +LD AS ++R +V   F   R 
Sbjct: 27  PLGRDPSSLPKLDPVSISYIDSRPISLRYRVRAMIEMSNLDEASKLSRLAVLNGFLVDRD 86

Query: 150 TVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEI 209
           TVF CN++I AM  AKRY DAI+LF +FFN+S  +PN +S + +I AHCD+G VD  LE+
Sbjct: 87  TVFICNSVIGAMCSAKRYDDAISLFNYFFNESQTLPNTLSCDLIIKAHCDQGHVDDALEL 146

Query: 210 YRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFL 269
           YRHI+ +   +P   TY  L K L+D+ R  EA  L R M         +VY+ LI GFL
Sbjct: 147 YRHILLDGRVAPGIETYMILAKALVDAKRFDEACVLARSM----SCCSFMVYDILIRGFL 206

Query: 270 NLENLEKANELFDELKERCLVYDG--------VVNATFMDWFFNKGKAKEAMESYKSLLD 329
           ++ N  KA+++F+ELK       G        + N +FM+++F +GK +EAME   +L D
Sbjct: 207 DIGNFVKASQIFEELKGLDSKLPGREYHKANAIFNVSFMNYWFKQGKDEEAMEILANLED 266

Query: 330 RQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKL 389
            Q  + P   N +L+VL+KHGKKTEAW LF +M+        +  +S+T +IM       
Sbjct: 267 AQV-LNPIVGNRVLQVLVKHGKKTEAWELFGEMI--------EICDSETVDIMSE----- 326

Query: 390 GKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSK----- 449
             FSE    F +           +    Y  +IV  CEHG + DAE  FAE+ +      
Sbjct: 327 -YFSEKTVPFER-----------LRKTCYRKMIVSLCEHGKVSDAEKLFAEMFTDVDGGD 386

Query: 450 -SLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVA 473
             + PD+   R +I  Y+ + ++DD +K  N+M    LR +A
Sbjct: 387 LLVGPDLLIFRAMINGYVSVGRVDDAIKTLNKMRISNLRKLA 398

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy Swiss-Prot
Match: Q9LEX5 (Pentatricopeptide repeat-containing protein At3g60980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g60980 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.1e-58
Identity = 147/380 (38.68%), Postives = 217/380 (57.11%), Query Frame = 0


Query: 117 RVQSLIR-AGDLDAASAVARHSVFSN--TRPTVFTCNAIIAAMYRAKRYGDAIALFQFFF 176
           RV  LIR  GDLD A+  AR +VF++  +  T   C +II  M R KR  DA  L++FFF
Sbjct: 38  RVSYLIRCVGDLDTAAKYARLAVFTSIKSESTTTICQSIIGGMLRDKRLKDAYDLYEFFF 97

Query: 177 NQSNIVPNVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFS--PSAVTYRHLTKGLIDS 236
           NQ N+ PN   +N +I +   +G V+  L  +   I +      PS  ++R LTKGL+ S
Sbjct: 98  NQHNLRPNSHCWNYIIESGFQQGLVNDALHFHHRCINSGQVHDYPSDDSFRILTKGLVHS 157

Query: 237 GRIGEAVDLLR-EMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLV----- 296
           GR+ +A   LR   +N+    D + YNNLI GFL+L N +KAN +  E K   L+     
Sbjct: 158 GRLDQAEAFLRGRTVNRTTYPDHVAYNNLIRGFLDLGNFKKANLVLGEFKRLFLIALSET 217

Query: 297 --------YDGVV---NATFMDWFFNKGKAKEAMESY-KSLLDRQFKMIPATCNVLLEVL 356
                   Y+  V    ATFM+++F +GK  EAME Y + +L  +  +   T N LL+VL
Sbjct: 218 KDDLHHSNYENRVAFLMATFMEYWFKQGKQVEAMECYNRCVLSNRLLVCAETGNALLKVL 277

Query: 357 LKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKLGKFSEAVETFRKVGTQP 416
           LK+G+K  AW L+ ++LD +       ++SDT  IMV+ECF +G FSEA+ET++K   +P
Sbjct: 278 LKYGEKKNAWALYHELLDKNGTGK-GCLDSDTIKIMVDECFDMGWFSEAMETYKK--ARP 337

Query: 417 KSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSKSLS-PDVPTHRTLIEAYLKLEQ 473
           K+     D      II RFCE+ M+ +AE+ F +  +      DV T++T+I+AY+K  +
Sbjct: 338 KN-----DYLSDKYIITRFCENRMLSEAESVFVDSLADDFGYIDVNTYKTMIDAYVKAGR 397

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-35
Identity = 103/431 (23.90%), Postives = 192/431 (44.55%), Query Frame = 0


Query: 125 GDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVPNVVS 184
           G +  A A+    V    RP + T + +I  +    R  +A+ L      +    P+ V+
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV-EYGFQPDEVT 213

Query: 185 YNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDLLREM 244
           Y  ++N  C  G   + L+++R  +       S V Y  +   L   G   +A+ L  EM
Sbjct: 214 YGPVLNRLCKSGNSALALDLFRK-MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM 273

Query: 245 LNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFNKGKA 304
             KG  AD + Y++LI G  N    +   ++  E+  R ++ D V  +  +D F  +GK 
Sbjct: 274 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKL 333

Query: 305 KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQAVNSD 364
            EA E Y  ++ R       T N L++   K     EA  +FD M+     P+       
Sbjct: 334 LEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV----- 393

Query: 365 TFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMEDAETF 424
           T++I++N   K  +  + +  FR++     S+    +   YN +++ FC+ G +  A+  
Sbjct: 394 TYSILINSYCKAKRVDDGMRLFREI----SSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 453

Query: 425 FAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFGELIK 484
           F E+ S+ + P V T+  L++      +++  L++F +M    + +     N +   +  
Sbjct: 454 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 513

Query: 485 NGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGLTPSL 544
             K  +   +   + ++  KPD   Y+V+I GLC +G+L  + ML  ++     G TP  
Sbjct: 514 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE--DGCTP-- 569

Query: 545 QEFVKEVFVKA 556
            +F   + ++A
Sbjct: 574 DDFTYNILIRA 569

[Close]

BLAST of Cp4.1LG01g08660 vs. NCBI nr
Match: XP_023546091.1 (pentatricopeptide repeat-containing protein At1g10270-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1278 bits (3307), Expect = 0.0
Identity = 648/648 (100.00%), Postives = 648/648 (100.00%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA
Sbjct: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA
Sbjct: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. NCBI nr
Match: XP_022942918.1 (pentatricopeptide repeat-containing protein At1g10270-like [Cucurbita moschata])

HSP 1 Score: 1264 bits (3271), Expect = 0.0
Identity = 641/648 (98.92%), Postives = 643/648 (99.23%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSR LSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRPLSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEFVKEVF KAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA
Sbjct: 541 TPSLQEFVKEVFEKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNY QSGSVQMTRPQQPSS PPPSME+QQQHSQPPQMAGQAVA
Sbjct: 601 PQMTGPNYIQSGSVQMTRPQQPSSDPPPSMEEQQQHSQPPQMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. NCBI nr
Match: KAG7031349.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1264 bits (3270), Expect = 0.0
Identity = 641/648 (98.92%), Postives = 643/648 (99.23%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGAL ASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALAASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEFVKEVFVKAGRNEEIE LLMMNRGGHAPYRPTSGPPRISQSQ PQFRGSYGPSA
Sbjct: 541 TPSLQEFVKEVFVKAGRNEEIEGLLMMNRGGHAPYRPTSGPPRISQSQAPQFRGSYGPSA 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNY QSGSVQMTRPQQPSSGPPPSME+QQQHSQPPQMAGQAVA
Sbjct: 601 PQMTGPNYIQSGSVQMTRPQQPSSGPPPSMEEQQQHSQPPQMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. NCBI nr
Match: KAG6600710.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1261 bits (3264), Expect = 0.0
Identity = 640/648 (98.77%), Postives = 643/648 (99.23%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLC EGAL ASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCKEGALAASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEFVKEVFVKAGRNEEIE LLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA
Sbjct: 541 TPSLQEFVKEVFVKAGRNEEIEGLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNY QSGSVQMTRPQQPSSGPPPSME+QQQHSQPP+MAGQAVA
Sbjct: 601 PQMTGPNYIQSGSVQMTRPQQPSSGPPPSMEEQQQHSQPPRMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. NCBI nr
Match: XP_022988649.1 (pentatricopeptide repeat-containing protein At1g10270-like [Cucurbita maxima])

HSP 1 Score: 1243 bits (3217), Expect = 0.0
Identity = 632/648 (97.53%), Postives = 638/648 (98.46%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQ+LQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQNLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPP QRDPN+PRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPTQRDPNSPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMM D
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMGD 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AE+FFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AESFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEF KEVFVKAGRNEEIERLLMMNRGGHAPYR  SG PRISQSQVP  RGSYGPS+
Sbjct: 541 TPSLQEFFKEVFVKAGRNEEIERLLMMNRGGHAPYRSPSGSPRISQSQVPHVRGSYGPSS 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNYFQSGSVQMTRPQQPSS PPPSME+QQQHSQPPQMAGQAVA
Sbjct: 601 PQMTGPNYFQSGSVQMTRPQQPSSDPPPSMEEQQQHSQPPQMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy TrEMBL
Match: A0A6J1FVY7 (pentatricopeptide repeat-containing protein At1g10270-like OS=Cucurbita moschata OX=3662 GN=LOC111447803 PE=4 SV=1)

HSP 1 Score: 1264 bits (3271), Expect = 0.0
Identity = 641/648 (98.92%), Postives = 643/648 (99.23%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSR LSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRPLSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEFVKEVF KAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA
Sbjct: 541 TPSLQEFVKEVFEKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNY QSGSVQMTRPQQPSS PPPSME+QQQHSQPPQMAGQAVA
Sbjct: 601 PQMTGPNYIQSGSVQMTRPQQPSSDPPPSMEEQQQHSQPPQMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy TrEMBL
Match: A0A6J1JM59 (pentatricopeptide repeat-containing protein At1g10270-like OS=Cucurbita maxima OX=3661 GN=LOC111485902 PE=4 SV=1)

HSP 1 Score: 1243 bits (3217), Expect = 0.0
Identity = 632/648 (97.53%), Postives = 638/648 (98.46%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQ+LQTPILPSSQSSSLISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQNLQTPILPSSQSSSLISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPP QRDPN+PRLPDSTSALVGPRLSLHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPTQRDPNSPRLPDSTSALVGPRLSLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMM D
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMGD 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AE+FFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AESFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL
Sbjct: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVPQFRGSYGPSA 600
           TPSLQEF KEVFVKAGRNEEIERLLMMNRGGHAPYR  SG PRISQSQVP  RGSYGPS+
Sbjct: 541 TPSLQEFFKEVFVKAGRNEEIERLLMMNRGGHAPYRSPSGSPRISQSQVPHVRGSYGPSS 600

Query: 601 PQMTGPNYFQSGSVQMTRPQQPSSGPPPSMEKQQQHSQPPQMAGQAVA 648
           PQMTGPNYFQSGSVQMTRPQQPSS PPPSME+QQQHSQPPQMAGQAVA
Sbjct: 601 PQMTGPNYFQSGSVQMTRPQQPSSDPPPSMEEQQQHSQPPQMAGQAVA 648

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy TrEMBL
Match: A0A6J1JBF6 (pentatricopeptide repeat-containing protein At1g10270-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482933 PE=4 SV=1)

HSP 1 Score: 1154 bits (2984), Expect = 0.0
Identity = 600/708 (84.75%), Postives = 617/708 (87.15%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRS RR+STSPSHS++LSIGPL+ HL +PI PSSQSSS ISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSFRRSSTSPSHSQSLSIGPLNHHLLSPIPPSSQSSSPISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRL+LHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLNLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRY DAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYSDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDV LEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVSLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNII RFCE GMM D
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIGRFCEQGMMAD 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLK+EQIDD L+VFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKIEQIDDALRVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGK V+CAQILTKMGERDPKPDPTCYDVVI+GLCNEGALDASR LLDQ+MRYGIGL
Sbjct: 481 ELIKNGKVVDCAQILTKMGERDPKPDPTCYDVVIQGLCNEGALDASRELLDQIMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVP---------- 600
           TP+LQEFVKE FVKAGR+EEIERLL MNR GHAPYRP SGPPRISQSQVP          
Sbjct: 541 TPALQEFVKEAFVKAGRSEEIERLLNMNRWGHAPYRPPSGPPRISQSQVPPQMGPPRPPP 600

Query: 601 --------------------------------------------------QFRGSYGPSA 648
                                                             Q  GSYGPS+
Sbjct: 601 QGHPPMAEPHWRPSINPQARGSYAPSSPQMTGPQGHPPMAEPHWRPSINPQAGGSYGPSS 660

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy TrEMBL
Match: A0A6J1J312 (pentatricopeptide repeat-containing protein At1g10270-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482933 PE=4 SV=1)

HSP 1 Score: 1141 bits (2951), Expect = 0.0
Identity = 600/741 (80.97%), Postives = 617/741 (83.27%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRS RR+STSPSHS++LSIGPL+ HL +PI PSSQSSS ISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSFRRSSTSPSHSQSLSIGPLNHHLLSPIPPSSQSSSPISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRL+LHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLNLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRY DAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYSDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDV LEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVSLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNII RFCE GMM D
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIGRFCEQGMMAD 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLK+EQIDD L+VFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKIEQIDDALRVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGK V+CAQILTKMGERDPKPDPTCYDVVI+GLCNEGALDASR LLDQ+MRYGIGL
Sbjct: 481 ELIKNGKVVDCAQILTKMGERDPKPDPTCYDVVIQGLCNEGALDASRELLDQIMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVP---------- 600
           TP+LQEFVKE FVKAGR+EEIERLL MNR GHAPYRP SGPPRISQSQVP          
Sbjct: 541 TPALQEFVKEAFVKAGRSEEIERLLNMNRWGHAPYRPPSGPPRISQSQVPPQMGPPRPPP 600

Query: 601 ------------------------------------------------------------ 648
                                                                       
Sbjct: 601 QGHPPMAEPHWQPSINPQAGGSCAPSSPQMTGPQGHPPMAEPHWRPSINPQARGSYAPSS 660

[Close]

BLAST of Cp4.1LG01g08660 vs. ExPASy TrEMBL
Match: A0A6J1EMZ6 (pentatricopeptide repeat-containing protein At1g10270-like OS=Cucurbita moschata OX=3662 GN=LOC111436060 PE=4 SV=1)

HSP 1 Score: 1134 bits (2933), Expect = 0.0
Identity = 599/741 (80.84%), Postives = 614/741 (82.86%), Query Frame = 0


Query: 1   MSLYRLLLRSLRRTSTSPSHSRALSIGPLSQHLQTPILPSSQSSSLISLLHARSFAFSSA 60
           MSLYRLLLRS RR+STSPSHS+ALSIGPL+ HL +P  PSSQSS  ISLLHARSFAFSSA
Sbjct: 1   MSLYRLLLRSFRRSSTSPSHSQALSIGPLNHHLLSPFPPSSQSSP-ISLLHARSFAFSSA 60

Query: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQS 120
           EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRL+LHNRVQS
Sbjct: 61  EEAAAERRRRKRRLRIEPPLHALRRDNYPPPQRDPNAPRLPDSTSALVGPRLNLHNRVQS 120

Query: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVP 180
           LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRY DAIALFQFFFNQSNIVP
Sbjct: 121 LIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYSDAIALFQFFFNQSNIVP 180

Query: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240
           NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL
Sbjct: 181 NVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDL 240

Query: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300
           LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN
Sbjct: 241 LREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVNATFMDWFFN 300

Query: 301 KGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360
           +GK KEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA
Sbjct: 301 RGKEKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQA 360

Query: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMED 420
           VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNII RFCE GMM D
Sbjct: 361 VNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIGRFCEQGMMGD 420

Query: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFG 480
           AETFFAELCSKSLSPDVPTHRTLIEAYLK+EQIDD L+VFNRMVDVGLRVVASFGNRVFG
Sbjct: 421 AETFFAELCSKSLSPDVPTHRTLIEAYLKIEQIDDALRVFNRMVDVGLRVVASFGNRVFG 480

Query: 481 ELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYGIGL 540
           ELIKNGK V+CAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASR LLDQ+MRYGIGL
Sbjct: 481 ELIKNGKVVDCAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRELLDQIMRYGIGL 540

Query: 541 TPSLQEFVKEVFVKAGRNEEIERLLMMNRGGHAPYRPTSGPPRISQSQVP---------- 600
           TP+LQEFVKE FVKAGR+EEIERLL MNR GHAPYR  SGPPRISQSQVP          
Sbjct: 541 TPTLQEFVKEAFVKAGRSEEIERLLNMNRWGHAPYRSPSGPPRISQSQVPPQMGPPHPPP 600

Query: 601 ------------------------------------------------------------ 648
                                                                       
Sbjct: 601 QGHPPMAEPHWRPSINPQAGGSYGPSSPQMTGPQGHPPMAEPHWRPSINPQAGGSYAPSS 660

[Close]

BLAST of Cp4.1LG01g08660 vs. TAIR 10
Match: AT1G10270.1 (glutamine-rich protein 23 )

HSP 1 Score: 741.1 bits (1912), Expect = 7.5e-214
Identity = 388/616 (62.99%), Postives = 467/616 (75.81%), Query Frame = 0


Query: 53  RSFAFSSAEEAAAERRRRKRRLRIEPPLHALRRD-NYPPPQRDPNAPRLPDSTSALVGPR 112
           R+ AFSSAEEAAAERRRRKRRLRIEPPLHALRRD + PPP+RDPNAPRLPDSTSALVG R
Sbjct: 86  RTMAFSSAEEAAAERRRRKRRLRIEPPLHALRRDPSAPPPKRDPNAPRLPDSTSALVGQR 145

Query: 113 LSLHNRVQSLIRAGDLDAASAVARHSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQF 172
           L+LHNRVQSLIRA DLDAAS +AR SVFSNTRPTVFTCNAIIAAMYRAKRY ++I+LFQ+
Sbjct: 146 LNLHNRVQSLIRASDLDAASKLARQSVFSNTRPTVFTCNAIIAAMYRAKRYSESISLFQY 205

Query: 173 FFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDS 232
           FF QSNIVPNVVSYN +INAHCDEG VD  LE+YRHI+ANAPF+PS+VTYRHLTKGL+ +
Sbjct: 206 FFKQSNIVPNVVSYNQIINAHCDEGNVDEALEVYRHILANAPFAPSSVTYRHLTKGLVQA 265

Query: 233 GRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLVYDGVVN 292
           GRIG+A  LLREML+KG  ADS VYNNLI G+L+L + +KA E FDELK +C VYDG+VN
Sbjct: 266 GRIGDAASLLREMLSKGQAADSTVYNNLIRGYLDLGDFDKAVEFFDELKSKCTVYDGIVN 325

Query: 293 ATFMDWFFNKGKAKEAMESYKSLLDRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLD 352
           ATFM+++F KG  KEAMESY+SLLD++F+M P T NVLLEV LK GKK EAW LF++MLD
Sbjct: 326 ATFMEYWFEKGNDKEAMESYRSLLDKKFRMHPPTGNVLLEVFLKFGKKDEAWALFNEMLD 385

Query: 353 NHTPPNFQAVNSDTFNIMVNECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVR 412
           NH PPN  +VNSDT  IMVNECFK+G+FSEA+ TF+KVG++  S+PF MD  GY NI+ R
Sbjct: 386 NHAPPNILSVNSDTVGIMVNECFKMGEFSEAINTFKKVGSKVTSKPFVMDYLGYCNIVTR 445

Query: 413 FCEHGMMEDAETFFAELCSKSLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVV 472
           FCE GM+ +AE FFAE  S+SL  D P+HR +I+AYLK E+IDD +K+ +RMVDV LRVV
Sbjct: 446 FCEQGMLTEAERFFAEGVSRSLPADAPSHRAMIDAYLKAERIDDAVKMLDRMVDVNLRVV 505

Query: 473 ASFGNRVFGELIKNGKAVECAQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLD 532
           A FG RVFGELIKNGK  E A++LTKMGER+PKPDP+ YDVV+RGLC+  ALD ++ ++ 
Sbjct: 506 ADFGARVFGELIKNGKLTESAEVLTKMGEREPKPDPSIYDVVVRGLCDGDALDQAKDIVG 565

Query: 533 QVMRYGIGLTPSLQEFVKEVFVKAGRNEEIERLL------MMNRGGH------------- 592
           +++R+ +G+T  L+EF+ EVF KAGR EEIE++L      + N G               
Sbjct: 566 EMIRHNVGVTTVLREFIIEVFEKAGRREEIEKILNSVARPVRNAGQSGNTPPRVPAVFGT 625

Query: 593 ---APYRPTSGPPRISQSQVPQFRGSYGPSAPQMTGPNYFQSGSVQMTRPQQPSSGPPPS 646
              AP +P    P  SQ  V    G    +A Q  G      G+ +    Q PS     +
Sbjct: 626 TPAAPQQPRDRAPWTSQGVVHSNSGWANGTAGQTAG------GAYKANNGQNPSWS--NT 685

[Close]

BLAST of Cp4.1LG01g08660 vs. TAIR 10
Match: AT3G49240.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 337.0 bits (863), Expect = 3.3e-92
Identity = 207/555 (37.30%), Postives = 313/555 (56.40%), Query Frame = 0


Query: 23  ALSIGPLSQHLQTPILPSSQSSSLI--SLLHARSFAFSSAEEAAAERRRRKRRLRIEPPL 82
           ++S      HLQT  L  S    ++    L  R  +F++ EEAAAERRRRKRRLR+EPP+
Sbjct: 2   SISKAAFLNHLQT--LSRSYRHRVLPQPFLAVRYMSFATQEEAAAERRRRKRRLRMEPPV 61

Query: 83  HALRR-----DNYPPPQRDPNAPRLPDSTSALVGPRLSLHNRVQSLIRAGDLDAASAVAR 142
           ++  R        P P ++PN P+LP+S SALVG RL LHN +  LIR  DL+ A+   R
Sbjct: 62  NSFNRSQQQQSQIPRPIQNPNIPKLPESVSALVGKRLDLHNHILKLIRENDLEEAALYTR 121

Query: 143 HSVFSNTRPTVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVPNVVSYNNLINAHCDE 202
           HSV+SN RPT+FT N ++AA  R  +YG A+     F NQ+ I PN+++YN +  A+ D 
Sbjct: 122 HSVYSNCRPTIFTVNTVLAAQLRQAKYG-ALLQLHGFINQAGIAPNIITYNLIFQAYLDV 181

Query: 203 GRVDVGLEIYRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLV 262
            + ++ LE Y+  I NAP +PS  T+R L KGL+ +  + +A+++  +M  KG   D +V
Sbjct: 182 RKPEIALEHYKLFIDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVV 241

Query: 263 YNNLISGFLNLENLEKANELFDELKERC--LVYDGVVNATFMDWFFNKGKAKEAMESYKS 322
           Y+ L+ G +   + +   +L+ ELKE+    V DGVV    M  +F K   KEAME Y+ 
Sbjct: 242 YSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEE 301

Query: 323 LL--DRQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVN 382
            +  + + +M     N +LE L ++GK  EA  LFD +   H PP   AVN  TFN+MVN
Sbjct: 302 AVGENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVN 361

Query: 383 ECFKLGKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSK 442
                GKF EA+E FR++G   K  P   D   +NN++ + C++ ++ +AE  + E+  K
Sbjct: 362 GYCAGGKFEEAMEVFRQMG-DFKCSP---DTLSFNNLMNQLCDNELLAEAEKLYGEMEEK 421

Query: 443 SLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVASFGNRVFGELIKNGKAVEC 502
           ++ PD  T+  L++   K  +ID+    +  MV+  LR   +  NR+  +LIK GK  + 
Sbjct: 422 NVKPDEYTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDA 481

Query: 503 AQILTKMGERDPKPDPTCYDVVIRGLCNEGALDASRMLLDQVMRYG-IGLTPSLQEFVKE 562
                 M  +  K D   Y  ++R L   G LD    ++D+++    + ++  LQEFVKE
Sbjct: 482 KSFFDMMVSK-LKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKE 541

Query: 563 VFVKAGRNEEIERLL 566
              K GR  ++E+L+
Sbjct: 542 ELRKGGREGDLEKLM 548

[Close]

BLAST of Cp4.1LG01g08660 vs. TAIR 10
Match: AT3G60960.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 232.6 bits (592), Expect = 8.7e-61
Identity = 152/402 (37.81%), Postives = 222/402 (55.22%), Query Frame = 0


Query: 90  PPQRDPNA-PRL-PDSTSALVGPRLSLHNRVQSLIRAGDLDAASAVARHSV---FSNTRP 149
           P  RDP++ P+L P S S +    +SL  RV+++I   +LD AS ++R +V   F   R 
Sbjct: 27  PLGRDPSSLPKLDPVSISYIDSRPISLRYRVRAMIEMSNLDEASKLSRLAVLNGFLVDRD 86

Query: 150 TVFTCNAIIAAMYRAKRYGDAIALFQFFFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEI 209
           TVF CN++I AM  AKRY DAI+LF +FFN+S  +PN +S + +I AHCD+G VD  LE+
Sbjct: 87  TVFICNSVIGAMCSAKRYDDAISLFNYFFNESQTLPNTLSCDLIIKAHCDQGHVDDALEL 146

Query: 210 YRHIIANAPFSPSAVTYRHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFL 269
           YRHI+ +   +P   TY  L K L+D+ R  EA  L R M         +VY+ LI GFL
Sbjct: 147 YRHILLDGRVAPGIETYMILAKALVDAKRFDEACVLARSM----SCCSFMVYDILIRGFL 206

Query: 270 NLENLEKANELFDELKERCLVYDG--------VVNATFMDWFFNKGKAKEAMESYKSLLD 329
           ++ N  KA+++F+ELK       G        + N +FM+++F +GK +EAME   +L D
Sbjct: 207 DIGNFVKASQIFEELKGLDSKLPGREYHKANAIFNVSFMNYWFKQGKDEEAMEILANLED 266

Query: 330 RQFKMIPATCNVLLEVLLKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKL 389
            Q  + P   N +L+VL+KHGKKTEAW LF +M+        +  +S+T +IM       
Sbjct: 267 AQV-LNPIVGNRVLQVLVKHGKKTEAWELFGEMI--------EICDSETVDIMSE----- 326

Query: 390 GKFSEAVETFRKVGTQPKSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSK----- 449
             FSE    F +           +    Y  +IV  CEHG + DAE  FAE+ +      
Sbjct: 327 -YFSEKTVPFER-----------LRKTCYRKMIVSLCEHGKVSDAEKLFAEMFTDVDGGD 386

Query: 450 -SLSPDVPTHRTLIEAYLKLEQIDDVLKVFNRMVDVGLRVVA 473
             + PD+   R +I  Y+ + ++DD +K  N+M    LR +A
Sbjct: 387 LLVGPDLLIFRAMINGYVSVGRVDDAIKTLNKMRISNLRKLA 398

[Close]

BLAST of Cp4.1LG01g08660 vs. TAIR 10
Match: AT3G60980.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 227.3 bits (578), Expect = 3.6e-59
Identity = 147/380 (38.68%), Postives = 217/380 (57.11%), Query Frame = 0


Query: 117 RVQSLIR-AGDLDAASAVARHSVFSN--TRPTVFTCNAIIAAMYRAKRYGDAIALFQFFF 176
           RV  LIR  GDLD A+  AR +VF++  +  T   C +II  M R KR  DA  L++FFF
Sbjct: 38  RVSYLIRCVGDLDTAAKYARLAVFTSIKSESTTTICQSIIGGMLRDKRLKDAYDLYEFFF 97

Query: 177 NQSNIVPNVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFS--PSAVTYRHLTKGLIDS 236
           NQ N+ PN   +N +I +   +G V+  L  +   I +      PS  ++R LTKGL+ S
Sbjct: 98  NQHNLRPNSHCWNYIIESGFQQGLVNDALHFHHRCINSGQVHDYPSDDSFRILTKGLVHS 157

Query: 237 GRIGEAVDLLR-EMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELKERCLV----- 296
           GR+ +A   LR   +N+    D + YNNLI GFL+L N +KAN +  E K   L+     
Sbjct: 158 GRLDQAEAFLRGRTVNRTTYPDHVAYNNLIRGFLDLGNFKKANLVLGEFKRLFLIALSET 217

Query: 297 --------YDGVV---NATFMDWFFNKGKAKEAMESY-KSLLDRQFKMIPATCNVLLEVL 356
                   Y+  V    ATFM+++F +GK  EAME Y + +L  +  +   T N LL+VL
Sbjct: 218 KDDLHHSNYENRVAFLMATFMEYWFKQGKQVEAMECYNRCVLSNRLLVCAETGNALLKVL 277

Query: 357 LKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKLGKFSEAVETFRKVGTQP 416
           LK+G+K  AW L+ ++LD +       ++SDT  IMV+ECF +G FSEA+ET++K   +P
Sbjct: 278 LKYGEKKNAWALYHELLDKNGTGK-GCLDSDTIKIMVDECFDMGWFSEAMETYKK--ARP 337

Query: 417 KSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSKSLS-PDVPTHRTLIEAYLKLEQ 473
           K+     D      II RFCE+ M+ +AE+ F +  +      DV T++T+I+AY+K  +
Sbjct: 338 KN-----DYLSDKYIITRFCENRMLSEAESVFVDSLADDFGYIDVNTYKTMIDAYVKAGR 397

[Close]

BLAST of Cp4.1LG01g08660 vs. TAIR 10
Match: AT5G28380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 6.0e-46
Identity = 112/322 (34.78%), Postives = 174/322 (54.04%), Query Frame = 0


Query: 162 YGDAIALFQFFFNQSNIVPNVVSYNNLINAHCDEGRVDVGLEIYRHIIANAPFSPSAVTY 221
           Y +AI+LF +FFN+S  +PN++S N +I AHCD+G VD  LE+YRHI+ +   +P   TY
Sbjct: 88  YDEAISLFDYFFNESQTLPNMLSCNLIIKAHCDQGSVDHALELYRHILLDGSLAPGIETY 147

Query: 222 RHLTKGLIDSGRIGEAVDLLREMLNKGHGADSLVYNNLISGFLNLENLEKANELFDELK- 281
           R LTK L+ + R+ EA D++R M       D  VY+ LI GFL+     +A+++F+ELK 
Sbjct: 148 RILTKALVGAKRLDEACDVVRSMSR----CDFAVYDILIRGFLDKGKFVRASQIFEELKG 207

Query: 282 -------ERCLVYDGVVNATFMDWFFNKGKAKEAMESYKSLLDRQFKMIPATCNVLLEVL 341
                          + N +FMD++F +GK +EAME + +L   +  +   + N +L+ L
Sbjct: 208 PNSKLPWRNYHKAIAIFNVSFMDYWFKQGKDEEAMEIFATLEHAEL-LNTISGNGVLKCL 267

Query: 342 LKHGKKTEAWTLFDQMLDNHTPPNFQAVNSDTFNIMVNECFKLGKFSEAVETFRKVGTQP 401
           ++HG+KTEAW LF  M+        +  +S+T  I+++   K G F E    F +V    
Sbjct: 268 VEHGRKTEAWELFLDMI--------EICDSETVGIIMS---KEGFFGEKTIPFERVRR-- 327

Query: 402 KSRPFAMDVAGYNNIIVRFCEHGMMEDAETFFAELCSK------SLSPDVPTHRTLIEAY 461
                      Y  +I   C+ G M +AE  FA++ +          PDV T R +I  Y
Sbjct: 328 ---------TCYTRMIASLCQQGNMLEAEKLFADMFADVDGDDLLAGPDVSTFRAMINGY 382

Query: 462 LKLEQIDDVLKVFNRMVDVGLR 470
           +K+ ++DD +K  N+M    LR
Sbjct: 388 VKVGRVDDAIKTLNKMKISNLR 382

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY69	1.1e-212	62.99	Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana OX...	[more]
Q9M3A8	4.6e-91	37.30	Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidop...	[more]
Q9LEX6	1.2e-59	37.81	Pentatricopeptide repeat-containing protein At3g60960, mitochondrial OS=Arabidop...	[more]
Q9LEX5	5.1e-58	38.68	Pentatricopeptide repeat-containing protein At3g60980, mitochondrial OS=Arabidop...	[more]
Q6NQ83	3.6e-35	23.90	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]

BLAST of Cp4.1LG01g08660 vs. NCBI nr


Match Name	Identity	Description
XP_023546091.1	100.00	pentatricopeptide repeat-containing protein At1g10270-like [Cucurbita pepo subsp...	[more]
XP_022942918.1	98.92	pentatricopeptide repeat-containing protein At1g10270-like [Cucurbita moschata]	[more]
KAG7031349.1	98.92	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG6600710.1	98.77	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022988649.1	97.53	pentatricopeptide repeat-containing protein At1g10270-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG01g08660 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A6J1FVY7	98.92	pentatricopeptide repeat-containing protein At1g10270-like OS=Cucurbita moschata...	[more]
A0A6J1JM59	97.53	pentatricopeptide repeat-containing protein At1g10270-like OS=Cucurbita maxima O...	[more]
A0A6J1JBF6	84.75	pentatricopeptide repeat-containing protein At1g10270-like isoform X2 OS=Cucurbi...	[more]
A0A6J1J312	80.97	pentatricopeptide repeat-containing protein At1g10270-like isoform X1 OS=Cucurbi...	[more]
A0A6J1EMZ6	80.84	pentatricopeptide repeat-containing protein At1g10270-like OS=Cucurbita moschata...	[more]

BLAST of Cp4.1LG01g08660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10270.1	7.5e-214	62.99	glutamine-rich protein 23	[more]
AT3G49240.1	3.3e-92	37.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G60960.1	8.7e-61	37.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G60980.1	3.6e-59	38.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G28380.1	6.0e-46	34.78	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 315..391 e-value: 4.3E-9 score: 38.1 coord: 392..468 e-value: 3.6E-11 score: 44.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 110..305 e-value: 6.9E-34 score: 119.6 coord: 469..574 e-value: 2.3E-7 score: 32.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 325..357 e-value: 4.9E-5 score: 21.2 coord: 405..437 e-value: 7.6E-5 score: 20.6 coord: 439..468 e-value: 2.9E-4 score: 18.8 coord: 255..287 e-value: 1.9E-4 score: 19.4 coord: 219..252 e-value: 0.0017 score: 16.4 coord: 183..210 e-value: 4.0E-4 score: 18.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 325..352 e-value: 0.014 score: 15.6 coord: 365..388 e-value: 0.011 score: 15.9 coord: 219..248 e-value: 0.0094 score: 16.1 coord: 255..282 e-value: 1.4E-4 score: 21.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 401..448 e-value: 5.8E-9 score: 36.0
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 177..200 e-value: 9.3E-7 score: 28.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 322..356 score: 9.448698
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 217..251 score: 9.711769
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 181..216 score: 9.350046
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 252..282 score: 9.371969
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 436..470 score: 9.985802
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 506..540 score: 9.119859
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 401..435 score: 10.029647
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 570..648
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 580..620
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 627..648
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..106
None	No IPR available	PANTHER	PTHR47937	PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN	coord: 1..645
None	No IPR available	PANTHER	PTHR47937:SF2	PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN, PF01535'-RELATED	coord: 1..645
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 155..389

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08660.1	Cp4.1LG01g08660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005515	protein binding