CmoCh20G006250 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh20G006250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionHexosyltransferase
LocationCmo_Chr20: 3075754 .. 3076244 (+)
RNA-Seq ExpressionCmoCh20G006250
SyntenyCmoCh20G006250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGGAAAAGCAAGGCGAATCATCATCACTCTTCAAGAACTCTCGTATCCCGGAAATGGACACTCTTCCTTTGCTTGGCTAGCTTTTGCTCTGGAATGCTCTTCACCAACAGGTTTCGAACTCAGATTATTACTCTCTCAAATGGGTTTCTTGTTTGTTTCTCGATTTCCTGCTTACTTTTCAATTCTGCGATTCTTAAACTATTCTGCTGATGTTTGGGAATATTGTGTTCTTTTCACCACGTTTGTTGGTTTGCCCAGATGATCCAAAAGGACGCGTGTTCTGTGATTTTGTTTTCTTCTTGTTCTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCCTAATAATGAATGGGGAGTTTGGTGGGTCTCATGTTTGCTTCCTTTTTCTTGTTCTTTTTTTGATTCAATTGATTTGGAATTAGTATTACCAGCAATTGCATTTATCAATACTCTTCCCATATATGAACAACTTGCTAGACTGCGGTTGA

mRNA sequence

ATGTGTGGGAAAAGCAAGGCGAATCATCATCACTCTTCAAGAACTCTCGTATCCCGGAAATGGACACTCTTCCTTTGCTTGGCTAGCTTTTGCTCTGGAATGCTCTTCACCAACAGGTTTCGAACTCAGATTATTACTCTCTCAAATGGGTTTCTTTATTACCAGCAATTGCATTTATCAATACTCTTCCCATATATGAACAACTTGCTAGACTGCGGTTGA

Coding sequence (CDS)

ATGTGTGGGAAAAGCAAGGCGAATCATCATCACTCTTCAAGAACTCTCGTATCCCGGAAATGGACACTCTTCCTTTGCTTGGCTAGCTTTTGCTCTGGAATGCTCTTCACCAACAGGTTTCGAACTCAGATTATTACTCTCTCAAATGGGTTTCTTTATTACCAGCAATTGCATTTATCAATACTCTTCCCATATATGAACAACTTGCTAGACTGCGGTTGA

Protein sequence

MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRTQIITLSNGFLYYQQLHLSILFPYMNNLLDCG
Homology
[Close]
BLAST of CmoCh20G006250 vs. ExPASy Swiss-Prot
Match: A8MRC7 (Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.7e-06
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 5  SKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          +K    +SSR+ VSRKWT+ LCL SFC GM FTNR
Sbjct: 3  AKIKGEYSSRSFVSRKWTILLCLGSFCVGMFFTNR 37

[Close]
BLAST of CmoCh20G006250 vs. ExPASy Swiss-Prot
Match: Q9SAA4 (Probable beta-1,3-galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=B3GALT1 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.4e-04
Identity = 28/73 (38.36%), Postives = 40/73 (54.79%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRTQIITLSNGFLYYQQLHLS 60
          M  K++ +++ + R +VSR    F+CLASFC GM FTNR    I+  + G     +L LS
Sbjct: 1  MSFKNRGDYNFTPRNVVSRNSVFFMCLASFCLGMFFTNRM-WNIVPEARGISRLSKLSLS 60

Query: 61 ILFPYMNNLLDCG 74
                 N+LD G
Sbjct: 61 SSDCDKKNVLDYG 72

[Close]
BLAST of CmoCh20G006250 vs. ExPASy Swiss-Prot
Match: Q8LEJ9 (Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=B3GALT4 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-04
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 9  HHH------SSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          HHH      +S++ VS+KWTLFLC+  FC+G+LF++R
Sbjct: 5  HHHRGLELSASKSFVSKKWTLFLCIGFFCAGILFSDR 41

[Close]
BLAST of CmoCh20G006250 vs. ExPASy TrEMBL
Match: A0A6J1FY57 (Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111448367 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-14
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. ExPASy TrEMBL
Match: A0A6J1JFR4 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111484098 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTL+SRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLISRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. ExPASy TrEMBL
Match: A0A6J1JG64 (Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111484098 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTL+SRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLISRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. ExPASy TrEMBL
Match: A0A5A7UZG6 (Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4837G00040 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          M  KSKA+ HHSSR+++S+KWTLFLCL  FCSGMLFTNR  T
Sbjct: 1  MSWKSKAD-HHSSRSVISQKWTLFLCLVCFCSGMLFTNRMWT 41

[Close]
BLAST of CmoCh20G006250 vs. ExPASy TrEMBL
Match: A0A0A0LQE6 (Hexosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_2G418850 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.1e-07
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          M  KSKA+ HHSSR+++S+KWTLFLCL  FCSGMLFTNR  T
Sbjct: 1  MSWKSKAD-HHSSRSVISQKWTLFLCLVCFCSGMLFTNRMWT 41

[Close]
BLAST of CmoCh20G006250 vs. NCBI nr
Match: XP_023512497.1 (probable beta-1,3-galactosyltransferase 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. NCBI nr
Match: XP_023512498.1 (probable beta-1,3-galactosyltransferase 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. NCBI nr
Match: XP_022943690.1 (probable beta-1,3-galactosyltransferase 2 [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. NCBI nr
Match: XP_023512500.1 (probable beta-1,3-galactosyltransferase 2 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
          MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRMWT 42

[Close]
BLAST of CmoCh20G006250 vs. NCBI nr
Match: KAG6570885.1 (NEDD8-activating enzyme E1 regulatory subunit AXR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 7.1e-14
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 1   MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRT 43
           MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR  T
Sbjct: 565 MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRMWT 606

[Close]
BLAST of CmoCh20G006250 vs. TAIR 10
Match: AT1G05170.1 (Galactosyltransferase family protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.9e-07
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 5  SKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          +K    +SSR+ VSRKWT+ LCL SFC GM FTNR
Sbjct: 3  AKIKGEYSSRSFVSRKWTILLCLGSFCVGMFFTNR 37

[Close]
BLAST of CmoCh20G006250 vs. TAIR 10
Match: AT1G05170.2 (Galactosyltransferase family protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.9e-07
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 5  SKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          +K    +SSR+ VSRKWT+ LCL SFC GM FTNR
Sbjct: 3  AKIKGEYSSRSFVSRKWTILLCLGSFCVGMFFTNR 37

[Close]
BLAST of CmoCh20G006250 vs. TAIR 10
Match: AT1G11730.1 (Galactosyltransferase family protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.7e-05
Identity = 28/73 (38.36%), Postives = 40/73 (54.79%), Query Frame = 0 

Query: 1  MCGKSKANHHHSSRTLVSRKWTLFLCLASFCSGMLFTNRFRTQIITLSNGFLYYQQLHLS 60
          M  K++ +++ + R +VSR    F+CLASFC GM FTNR    I+  + G     +L LS
Sbjct: 1  MSFKNRGDYNFTPRNVVSRNSVFFMCLASFCLGMFFTNRM-WNIVPEARGISRLSKLSLS 60

Query: 61 ILFPYMNNLLDCG 74
                 N+LD G
Sbjct: 61 SSDCDKKNVLDYG 72

[Close]
BLAST of CmoCh20G006250 vs. TAIR 10
Match: AT4G26940.1 (Galactosyltransferase family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 9  HHH------SSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          HHH      +S++ VS+KWTLFLC+  FC+G+LF++R
Sbjct: 5  HHHRGLELSASKSFVSKKWTLFLCIGFFCAGILFSDR 41

[Close]
BLAST of CmoCh20G006250 vs. TAIR 10
Match: AT4G26940.2 (Galactosyltransferase family protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.2e-05
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 0 

Query: 9  HHH------SSRTLVSRKWTLFLCLASFCSGMLFTNR 40
          HHH      +S++ VS+KWTLFLC+  FC+G+LF++R
Sbjct: 5  HHHRGLELSASKSFVSKKWTLFLCIGFFCAGILFSDR 41

The following BLAST results are available for this feature:
BLAST of CmoCh20G006250 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A8MRC79.7e-0662.86Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=B3G... [more]
Q9SAA42.4e-0438.36Probable beta-1,3-galactosyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=B3G... [more]
Q8LEJ93.1e-0451.35Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=B3G... [more]
BLAST of CmoCh20G006250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FY573.5e-1495.24Hexosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111448367 PE=3 SV=1[more]
A0A6J1JFR44.5e-1492.86Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111484098 PE=3 SV=1[more]
A0A6J1JG644.5e-1492.86Hexosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111484098 PE=3 SV=1[more]
A0A5A7UZG69.1e-0771.43Hexosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4837G... [more]
A0A0A0LQE69.1e-0771.43Hexosyltransferase OS=Cucumis sativus OX=3659 GN=Csa_2G418850 PE=3 SV=1[more]
BLAST of CmoCh20G006250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023512497.17.1e-1495.24probable beta-1,3-galactosyltransferase 2 isoform X1 [Cucurbita pepo subsp. pepo... [more]
XP_023512498.17.1e-1495.24probable beta-1,3-galactosyltransferase 2 isoform X2 [Cucurbita pepo subsp. pepo... [more]
XP_022943690.17.1e-1495.24probable beta-1,3-galactosyltransferase 2 [Cucurbita moschata][more]
XP_023512500.17.1e-1495.24probable beta-1,3-galactosyltransferase 2 isoform X3 [Cucurbita pepo subsp. pepo... [more]
KAG6570885.17.1e-1495.24NEDD8-activating enzyme E1 regulatory subunit AXR1, partial [Cucurbita argyrospe... [more]
BLAST of CmoCh20G006250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05170.16.9e-0762.86Galactosyltransferase family protein [more]
AT1G05170.26.9e-0762.86Galactosyltransferase family protein [more]
AT1G11730.11.7e-0538.36Galactosyltransferase family protein [more]
AT4G26940.12.2e-0551.35Galactosyltransferase family protein [more]
AT4G26940.22.2e-0551.35Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025298Domain of unknown function DUF4094PFAMPF13334DUF4094coord: 18..43
e-value: 5.5E-9
score: 36.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G006250.1CmoCh20G006250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008378 galactosyltransferase activity
molecular_function GO:0008194 UDP-glycosyltransferase activity