CmoCh19G003500 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G003500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L23, chloroplastic
LocationCmo_Chr19: 3033093 .. 3041594 (-)
RNA-Seq ExpressionCmoCh19G003500
SyntenyCmoCh19G003500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGTATGTCTTATGTGAGTCTTTACCTAGTTTATAGTACCCACACGCTTCGGTTGATGTTACCGTAATCTTTTCGTGATGTGTTCTCGTCGTGACACAATGGACTTGGCAGCATCAGGCAAAGAGAGGTAAAGGTCATATATTTGCAAATTGCTATGAAATATTGGTGTCTTGAGAGGCTGCATTATATTTTGCCAAAACTCATGATTTGTACCATGATAACATCTTACACAAGAATCATTAGAAGTGGCATATTCTAACAGTTTGTGTACGACTTTTGGCTAGCATTTTAATGGGATAATCTGATTAAGAGAATGATTCGAATGCTTTGACCAATTTATTCTTTTGACATTCTTCACCATTACCACTTGGTTCAAGTCAAAGATTTAGTTCGACATATTCTCTTTATAAGGCATTTGTGGATCTAATTCGAATGCTTTGACCATTGATTTTTTTTTTATAAGGCACTTGGTTCAAGTCAACCTCTTTATAAGGCATGATGTGATGTACTGATAATATTGTTGGATCGATATGACAACCCTAGAGGGGTGAATAGGGTTTCAACAATATAAATATTAAAATTTTCTAGTAACAATAAAACTTATATTATGCAATAAAACTTAACAATAATTTAGAATTTAAATAGGAAAAGAGTTAGAAAATATAACACCATGGTTTGGTCAAACTCGACCTACTCCACTCCCCAAGCTCCTCTTGGGAATTTGAATAAAATTTTCTAACTCTTTCCTCAGATCAGAGTCCAACCGCTACTTTTATGAGTGCAAGAGCAAACTCAATTCTTTCCACAGCTCAGGATCAAACCGGTACACCGTTCTTTTTACGAGTTCAAGAGCAAACACAATCCTTTTCACGGCTCAGGATCAAACCGGTACAACTATCTGAAATCTTATAGAAACACACAACTCGAAACACACAACTCTCTGAAGTAATAGATTTACAATTTTCTCACAATACAATAGACATCTCTCTCAAGAATAAGATAAACCATAAATAGAATTGGACGCTTCGGAGAGATTTCTCACAATACAATAGACATCTCTCTCAAGAATAAGATAAACCAGAAATAGAATTGGAAGCTTCGGAGAGATTTCTCACAATACAATATAGAATTGGAAGCTTTGGAGAGATTTTTCACAATACAATAGACATCTCTCTCAAGAATAAGATAAACCAGAAATATAATTAGAAGCTTTTGGAGAGATTTCTTATAATAGACATCTCTCTCAAGAACAAGATAAACCAGAAATAGAATTGGAAGCTTTGGAGAGATTTCTCACACTACAATAGACATCTCTCTCAATAATAAGATAAACCAGAAATAAAATTGGAAACTTGGGGGAGAGCAACAATGGAAGCTTTTAAAAAAGTTGTGTATTGTGTTCTATGTTCTGTGTGTTGTGTTTTCGATTGATCCACGATGTCAATTTTGCCGTTGGTCCATGATGTTAATTTTGTCACCACATCATCGTGTCCGATATCTTGTTTTGAATTCGATTGGTCCATGATGTCAATTTTGCTCCCACATCATCACGTCGGGTATCTTGTTTTGACTGAAAGTTCTTCGTTTTAGCTCTAATTTGAGTGAACCAAAAAAGACGTTGAAATCGTTATTCCCAACCTTACACTGTCTAAAAAATACTGAGAATTGTTAATAATTGAAGATAGGTTTGTTATCATCAAAACATCAATTAATTAATTAATTAAAATTAATTAATTTGAAATTAAGGAAAAAAAAAAAAAAAACAACAACTATGATAAATGTTATGGTGTAACACGTTTGGCGATATAGTACATGTTATATGATATGCTGATGATATATATATATATATATATACATCTTTGGTATTGATCTTTTACAGGGGAGGGAAGGTAATATCGCTGTACCCTGTAAGAATCAATAGGTGATTGAAGGAATAAATAGGGAGAGGAGCGAGCGAAGCAGACTGATAGTTTACGAGGGGCAGACAATAGAATTGTGAGACCGATAGGTGAATGGGCAGGTTCTAGAGCAAAATGGATACAAATTAGTGGCTGCTACTTAGTATGGGCAATGGGTCTGAAAAAGTCTCTAAACTCAAAATGGTGAGATATTTGTACCCTGTCGAAGTAAGGAACCATGACATATATGTTTGGAATAGATTCCTTTACCAATTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTGATCAAGGCATTTAGATAAAGACTCGTTTTTTCCTCTTTTCGGATGGTAAATCTTTCTCAGAACATGGAGTGTGAATCAAAGCCCCATCTTTGAATTGAAATTGAGATATTGATGCAAGTTCTTCCCCTCTGAATAAGATAGATTCATATCTGAAAGAGGTTGACAATAAGTTTTTTCAAAATTGACTTTTTGTCCCTCTGTTAGGTTAGATGTGTTCTAGAAATGTCTATGATCGAGTAAATAGCTCGACGAACGAATGGATTGAATCGAATTGGAAAATGGAAAAATTTGTACAAGTTATACCTTTCCACTTTGTGTAAAATAGTCAGGTATGAATATGTTAGATACTTGTGACTTGATTGGTTAAATAGTATCTCTCTCCCAGCAGCATGTTTTTTTTACGGCCGCACAAAGAAAAGATTTTGTTGCGAATGAACAAGATATTGAGGAATTGTCCATACGTCAAATCATAATTATTGATACGGGTCTTTTCCACATAACCAACATACATCAAAAGGGAATCTTTTGTTACAATAGAAGCAGAGTAGATAGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACGGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAGAGTGTTATCAAAGGATTTCCTGTGATTCTTTCTAGTATGGAATGAGTAAATCATTTACTTTGCTATCTTATCGAAGAAAAAGAAATTGTTATATTGTTCTTGATCAAGAATTTCTCTTTTTGGGAAGTCTCATGATCATCCAATAAGAAGGGTTTCCATTTTGTCAAATTCAAACTCTTTGAAGACCTATTGATTCTAACAACTGATTTTAGAGTTGATCATTCGGACCTTTCAATTCATAGATGTAGATCTCGGACCTATTAATGGAGATATTCTCGAAACTCATAAAGAAAAAAGGAAGTGAGTTAGAATAGAAGAAACTTGGACAAAAAGAAAGGAAGTGACTTAGACAGACAAATCCTTTTTATAGATAACATCATACCAATCCAGCGAATATAGATTAATATGTAATCGATCCAACACTACTTGAAAATGGCTCTTTCGCTCAGAAATGAAATATTCCTGGAAATTCTTGCTCCCACTCCCATTGGACCATTTCTATCTATATGCATTAGAATCCCGATTCATGGATCTCTCGAGAAAGAAAAATAAGAGGAAGAGGATCAAACCATTTCTTCTGACCCTTTTTCTTGATAAATCTTGGTTGATCGTATATTGCATTATAGTTCTATGATTAAGAGAAGAGTCTCATTTCCTATTTGATCCATTTTCATTCTATATTCTAAGTTGCGATCGGATCTATAAAAAGAATCGATTCAATACTTATGGTACTTATATTGGATTTGAATCTGATTTTGGATCAATATAGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTCAAAATCATTCCCGGGGGAGGTCCGTACCCATTTTTTTTTGCTGATCCTTCGATTCATTCTCTTCATAAAAAAGAAAGAAAAGGTAGAACCAAGACATCCTTCTTTTTTGATGATATGAATCCAACAACTGATCACTTCCATGTACCTGAACGAGCAATTACAAGAAGTAATACAAATAAGATTCAAGAATCAAATCAAGAAAATAATGGAGTGGCTGATATTGGAAAGTAATTAGAAGACTTGCTTGGTAGTTGAATTACCAATTAAGGAAATTTATGAAAAGTAATTAGAAGACTTGACTTTGTTAGTTGAATTATCAATTAAAGGAATTTATTAATGTCTTATTTGCTTCAATTTGTATTTAATAGCATTCGTTACCATTTATTAGTGATTGGTGGCTGAACTTTATTTTGTTAGGGTTATCTCTTGAGCCTATTTAAAGACATGTAATATTTTGGGGGATTTTGGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAACCTTGCTTTATGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTTGATCTAAGAGTCATTCATCTTCTAACCAACTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTTCTCGGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGTTTATCATTTCGATTCATCCCTTTACTCATGAAAGAATTCTTTTTGATCCAATCTGTAGGAATCAAGGCAAATCCCTTATGATACACCACATCCGGCTCGGTTATTAATAGAGTGAATAGATCTTCCATTTCTTTCAATCTCTCTTCTGATTCAAAATTGTGGTGTAAGGTGTATCCCCTCCAGTTCCGGTCATGGAATAGATGAAATAAATAAATGGATTTTTGTGAAAGAATGAAATCTTATTGTAACGGTCCATATCCAATTCAGCCTTCGGAACAATATCACACCCCGAATCTGATTCAATAGGATGAATTGAGACGTTATTTTGATAACACGTATATATCTTGAATATATTAACTATTTCTTTCTTTTCCGATCGCCTGGAAGGAAGGGACAAAAGATCTTCTTTCTTCAACAATTTCTGATCTCTAGTGAACCTCTTAGTAGGATTCGAACCCATATTCAGTTCTTACCATTTGTCAGACAGAAAAGAACAAATGGATCTTGTAGGATTCCCGAGAAATTCTACAATTTCTTCCCCGGAATCGGATGATTATTCATCTGCTTCTCACTCACATTCTTTGAATAGCCGAGACATTGAGCAATATCCAGAAAAGCATTTTGGGAATCGGTCTGATTCTATCTCTGTTCGTTCTGTTTGAAGAAAGGAAGGATCCCAAAGAATCGATCTTTCTTTTTGTTGTTGAATCTCTCTTTGATTGAGAAATGTATGGTACTCCGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATCATTAGATTCTTTCAATTGGCTAGAATCCGTTACTTGAACGAAACTAGATCTTGCTTGTGGAATCATATTGAATATTTGACAAGACATTCCGTACCTTGCTAAAAAATCGATCCTTATTTACCAACCAATTGTCTAACCAAATCCGATTCGTGCAGATGGATTCTTCCCCTAACTAATGAAGGAAGAGATCTTGGAGGAATTGCCACATATGAAATTGAGCACAATTTTGCAAAGAAATAGACCACTTCTTTCTCGAGAAGAGATGGGAAAGAAAGATGCTCAATATCATTTGATTGAATAGTTCTCCCATCTCCTTGTTGTTTGAAGAAGCTCAATTGGTCTTTTTTCATGAAAAGCAAGAGATAAGAAATCCAGTCTTTCACTAAGATTTCAAATAGCTGTCCCGAATTCAAGTTGATGCTCTTTTGCCTCTTCCTCGGAGAAAGACGATCAAACAATTACCAATCATGGTCCTTGCCTCTTTCTCTTTGAATGAGATCTCATCAATTCCAGCGACGGTTTCATTAGATATATTACAATGAGCAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTGAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAAGAGCTCTCAGAGATCCTTTTTCCTTTTTGAAGATGAGCAAAACAATCCACCTATTGATATAGTATAGGAAGAGCCAAAATCTTCTTCCAATGTCTCATTTCTGGGTCCAATGAATAGGTAGAGGAAGAAACCCTATCAAATAGAGTTTCCTTTCGATTGTTAATACGTGATAGATATAAGGAAGGACCACTACTACAAATAGTACTACACCCTTGATCGTGAAATATTGATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGTATACTCTAAATTCGGGAGTCTAAGAGTTTTATAAAACGGGATGGATGAAAACAAATGTGAATGAAAGATACCAGGCCATGAATCTAAAAAATAGTAAGAATGATTGATCTCTCTCAATTAGAAAATCCAAGATTGGAATTGATGTCCTTTCATTGAGGCCTCCTAAATTGCATTGATTTCTCCTAAAGATTGAATTGCAAATTGGAATTTGGTTATTCACCATGTACAAGGATCCTCCGCTAAGCATCCATGGCTGAATGGTTAAACCGCCCAACTCATAATTGACGAATTCGTAGGTTCAATTCGTACGGATGCACACCAATGGGACCCTACAATAAGTCTATCTCATCATCTAGACATATTGGTGTGGTGTATATTCATTATGAACTTGAACTTGCATTCTTATTGAGACTCGAACTCATACAGAAGCGGAAAGGCTAGAAGGAAGAATGAATGGGACCCTATTACAAAAGTACTCGGTTATTGGGACCCTATCTATTATGGGACATACAATACATTACAGACAAAAGTACTCAGTTATTGGGACTATATTATACGACATACAATGCTATATATTCAATATGGATATACATGGGACTCTATTATAGGACATACAATAGGACTCTATTATAGGACATACAATAGGACTTTGTTATAGGACATACAATGCTATATATTCAATATGCGGGACCCTATTATGCACCCTATTATAGGGCATTGGTTATGGGACTCCATTATAGGATGCATTATAGACAAAATATGCACCCTATTATAGTATTGGGACTCGAACTCATAGGGAAACGGAAAGGCTAGAAGGAAGAATGAATGGGACCCTATTATGAGACATACAATGCATTACAAACAAAATATGCTGTATTTACAGACAAAAGTACTCGGTTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGGTTATTGGAGAAAAAGAAATATACTTCTAATGTCGAACTTGTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCTATTATATTCCACCTCTTAGAAAGAAAAGAACTGAAAGAAAATTAATAGCATACTATTCTTTCGGAGCACGAGTTTTCGGTTTTGTCTTTCCTTCTCAAGAGAATTAAAGGTGAGGGGAGAGTCAATTCAATCCTCAGCCTATTTACCGAGTTCAATGAAAGAAGGGACAGGTGAATGAACTTGACCTTCAGATCATACAACCTATTTACCTTGTGAAAGAAGTAATAGTCCGAGCAATGGATTGAATCAAAGCCAATTTACCGAGTTCTCGAAGCGAGAGGAAAGAAAAGCAAAGAGAAGAGAAAGAATAAAACACCTAGTTACTTATACCTTGTGAAATCTGGGAGTGAACGATCATGAATAAGGAGTCTTTGTTTACGTTTACAGTTCAATCAGGCGGAGAGAGAGAGGAAATGAATTAGCGGCTTTACCCCCAAAATAAGGGAAGGGAATAGAGGGGAAGAAGCTTGACCGGATGATCATACAACCTATTTACCTCGTGAAAGAAGTAATAGTCCTGTTAAACTCGAATTCATCTTGCTTGAGTGGAGTGGTTACAGTCTTTGAATAACTCACAAGAACTTCCTGAGAATAACTCACAAGAACGGAAGGGAATAGAGGTTCTGTCGAATGAATAGGAGTATTGATCTTTTACTGTTCAGGGCGAGTAAATGAATTGAATATGCTTTACCTTCTTCAATGACCCTAAAAATAGGGAGAGCCGAAGTAGTTCTGTCTCATTCATAAGGAGTTGAGTCTTGACTTCCTGTTCTGTCTCTTTGTAATTACCTCTGAAATGGCCTCAAAAATAGGAGAGAAGTCAACTCTCGAGAATCATTCTTACTTACAATAGAGTAAGTGAAAGAATTAAGGTTTCTTCTTATTCTCATTCATTCAGCCTATTTACCGAGTTTGTGAAGTAGTTCAGGAGAATGAATCTTCAGTCTTAGTTGAAGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTGA

mRNA sequence

ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAACAAAAGTACTCGGTTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTGA

Coding sequence (CDS)

ATGGATGATTCAAGAGGTCTCGCTTTTGTTGATGAATTCAGCTGGATAGGAATCCCTCTTTTTTCCAATCCAGTTCTTCCACCACCGCGAACCCCAACAAAAGTACTCGGTTATTGGAGAAAAAGAAATACTTCTAATGTCGAACTCGTCTTTGGCGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCAGGAAAAGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCACATTACAGACAAAAGTACTCGTCATCAACTCCTGGGAAAGGCTAGAAGGAAGAATGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGTGAAAGAATAAAGAGGAGCGAAGCAAAGAGACCGATAGGGAGAGGAGCGAAGCAGCTTTACCGGAGAGTGAAAGACTGA

Protein sequence

MDDSRGLAFVDEFSWIGIPLFSNPVLPPPRTPTKVLGYWRKRNTSNVELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYGTYNALQTYDHYASTGERIKRSEAKRPIGRGAKQLYRRVKD
Homology
[Close]
BLAST of CmoCh19G003500 vs. ExPASy Swiss-Prot
Match: Q06FM2 (50S ribosomal protein L23, chloroplastic OS=Pelargonium hortorum OX=4031 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 24/33 (72.73%), Postives = 24/33 (72.73%), Query Frame = 0 

Query: 37 GYWRKRNTSNVELVFGVKVIAMNSHRLPGKARR 70
          G  R    S VEL FGVKVIAMNSHRLPGK RR
Sbjct: 29 GSTRTEIKSWVELFFGVKVIAMNSHRLPGKRRR 61

[Close]
BLAST of CmoCh19G003500 vs. ExPASy Swiss-Prot
Match: Q7FNR4 (50S ribosomal protein L23, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 47 VELVFGVKVIAMNSHRLPGKARR 70
          VEL FGVKVIAMNSHRLPGK+RR
Sbjct: 39 VELFFGVKVIAMNSHRLPGKSRR 61

[Close]
BLAST of CmoCh19G003500 vs. ExPASy Swiss-Prot
Match: Q3C1N5 (50S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 47 VELVFGVKVIAMNSHRLPGKARR 70
          VEL FGVKVIAMNSHRLPGK+RR
Sbjct: 39 VELFFGVKVIAMNSHRLPGKSRR 61

[Close]
BLAST of CmoCh19G003500 vs. ExPASy Swiss-Prot
Match: Q33BY9 (50S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 47 VELVFGVKVIAMNSHRLPGKARR 70
          VEL FGVKVIAMNSHRLPGK+RR
Sbjct: 39 VELFFGVKVIAMNSHRLPGKSRR 61

[Close]
BLAST of CmoCh19G003500 vs. ExPASy Swiss-Prot
Match: Q2MIE5 (50S ribosomal protein L23, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0 

Query: 47 VELVFGVKVIAMNSHRLPGKARR 70
          VEL FGVKVIAMNSHRLPGK+RR
Sbjct: 39 VELFFGVKVIAMNSHRLPGKSRR 61

[Close]
BLAST of CmoCh19G003500 vs. ExPASy TrEMBL
Match: A0A6G9IFP9 (Ribosomal protein L23 OS=Cistanche sinensis OX=241807 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.1e-09
Identity = 40/75 (53.33%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRLPGK RR                                GTYYG
Sbjct: 36  VELFFGVKVIAMNSHRLPGKGRRM-------------------------------GTYYG 79

Query: 107 TYNALQTYDHYASTG 122
           TYNALQ YDHYASTG
Sbjct: 96  TYNALQMYDHYASTG 79

[Close]
BLAST of CmoCh19G003500 vs. ExPASy TrEMBL
Match: W8RN00 (50S ribosomal protein L23, chloroplastic OS=Praxelis clematidea OX=287011 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.7e-09
Identity = 40/75 (53.33%), Postives = 46/75 (61.33%), Query Frame = 0 

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRL GKARR     ++       +  + +   +     R   TYYG
Sbjct: 39  VELFFGVKVIAMNSHRLRGKARRMG--PIMGQTMHYRRMIITLQPGYSIPPLRKKRTYYG 98

Query: 107 TYNALQTYDHYASTG 122
           T NALQTYDHYASTG
Sbjct: 99  TDNALQTYDHYASTG 111

[Close]
BLAST of CmoCh19G003500 vs. ExPASy TrEMBL
Match: A0A345BCL7 (50S ribosomal protein L23, chloroplastic OS=Lindera glauca OX=332435 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 37/75 (49.33%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIA+NSH+LPGK                               G  NGT+YG
Sbjct: 39  VELFFGVKVIAINSHQLPGK-------------------------------GLKNGTHYG 82

Query: 107 TYNALQTYDHYASTG 122
            YNALQTYDHYASTG
Sbjct: 99  AYNALQTYDHYASTG 82

[Close]
BLAST of CmoCh19G003500 vs. ExPASy TrEMBL
Match: A0A109X1C7 (50S ribosomal protein L23, chloroplastic OS=Bletilla ochracea OX=862845 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 36/75 (48.00%), Postives = 36/75 (48.00%), Query Frame = 0 

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRLPGK RR                                G   G
Sbjct: 39  VELFFGVKVIAMNSHRLPGKGRRM-------------------------------GPIMG 82

Query: 107 TYNALQTYDHYASTG 122
             NALQTYDHYASTG
Sbjct: 99  HINALQTYDHYASTG 82

[Close]
BLAST of CmoCh19G003500 vs. ExPASy TrEMBL
Match: A0A2D1VK55 (50S ribosomal protein L23, chloroplastic OS=Pleione bulbocodioides OX=141752 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 36/75 (48.00%), Postives = 36/75 (48.00%), Query Frame = 0 

Query: 47  VELVFGVKVIAMNSHRLPGKARRKNEWDLLWDIQCTLQTKVLVINSWERLEGRMNGTYYG 106
           VEL FGVKVIAMNSHRLPGK RR                                G   G
Sbjct: 39  VELFFGVKVIAMNSHRLPGKGRRM-------------------------------GPIMG 82

Query: 107 TYNALQTYDHYASTG 122
             NALQTYDHYASTG
Sbjct: 99  HINALQTYDHYASTG 82

[Close]
BLAST of CmoCh19G003500 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-05
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 0 

Query: 47 VELVFGVKVIAMNSHRLPGKARR 70
          VEL FGVKVIAMNSHRLPGK +R
Sbjct: 39 VELFFGVKVIAMNSHRLPGKVKR 61

[Close]
BLAST of CmoCh19G003500 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-05
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 0 

Query: 47 VELVFGVKVIAMNSHRLPGKARR 70
          VEL FGVKVIAMNSHRLPGK +R
Sbjct: 39 VELFFGVKVIAMNSHRLPGKVKR 61

The following BLAST results are available for this feature:
BLAST of CmoCh19G003500 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q06FM21.6e-0472.7350S ribosomal protein L23, chloroplastic OS=Pelargonium hortorum OX=4031 GN=rpl2... [more]
Q7FNR42.8e-0491.3050S ribosomal protein L23, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl23-... [more]
Q3C1N52.8e-0491.3050S ribosomal protein L23, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=rpl2... [more]
Q33BY92.8e-0491.3050S ribosomal protein L23, chloroplastic OS=Nicotiana tomentosiformis OX=4098 GN... [more]
Q2MIE52.8e-0491.3050S ribosomal protein L23, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=r... [more]
BLAST of CmoCh19G003500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6G9IFP95.1e-0953.33Ribosomal protein L23 OS=Cistanche sinensis OX=241807 GN=rpl23 PE=3 SV=1[more]
W8RN008.7e-0953.3350S ribosomal protein L23, chloroplastic OS=Praxelis clematidea OX=287011 GN=rpl... [more]
A0A345BCL71.3e-0749.3350S ribosomal protein L23, chloroplastic OS=Lindera glauca OX=332435 GN=rpl23 PE... [more]
A0A109X1C72.0e-0548.0050S ribosomal protein L23, chloroplastic OS=Bletilla ochracea OX=862845 GN=rpl23... [more]
A0A2D1VK552.0e-0548.0050S ribosomal protein L23, chloroplastic OS=Pleione bulbocodioides OX=141752 GN=... [more]
BLAST of CmoCh19G003500 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00840.15.8e-0586.96ribosomal protein L23.1 [more]
ATCG01300.15.8e-0586.96ribosomal protein L23 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G003500.1CmoCh19G003500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0043229 intracellular organelle