Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTACCAAATTTACTAGCACTTATTTCAAAACTCATTTACGTAATTCTGGCATCCACCATCAACTCTCGTGTCCATATACACTTGCTCAAAATGGTCGTGCCGAGAGAAAACATCGTCATGTGACTGAGCCTGGCTTGACCCTTCTCTTTCACTCTCATCTTTCTCCTCATTTTGGGTTGACGCTTTCAGCACGACAACTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTGAACTCATTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGATTGTCGTGTTTATCCTAATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCTGCAGCATAACTTGTATTTTTTTGGGTTATAGTCCTACGCATAAAGGGTTCCACTGTCTTGATCCCGCCACTACTAAGCTTTATATTATCCGTCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCACGCTCAACCTCTTTCCTCTATTCCTATTTCAAATTTCTTGGAACCACATCTTTATCATATTGATTCATCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCACCACTTCATCATCGCCCATTCCTCGATCCAATTCATCCCCGTGTGATATTTGTTCTAACCTTGTGGATGAGTCTGTGTAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTATTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGAATTCAGATCTGCAGCTAAGAATCCTGCTTGGGTGGCTATCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGATTTTGGTTCCTCGCCCTGCCAACACTAACATCATGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCTGGTTTCTGGTCTTGACTACACTGACACTTTCAGTTCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTCTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACATGTTCATATGGAACAACCTCGTGGGTACATTGATCTTCGATTTCCCACTCATGTTTGTCTATTAAAGAACGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCCTGGTTTCAGCATTTTAGCTCATTTCTTCTCACACTTGGATTTTCTTGCAGTCGTGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCCTTATGTTGATGACATTATTGTTATCGGCAACAACTCATCTCTTATTGACAACTTTTTTCGCAAGCTTCCTCCTAAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCCTCACCCACTCCTGATGGTCTCTTTATTAGTTAA
mRNA sequence
ATGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTATTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGAATTCAGATCTGCAGCTAAGAATCCTGCTTGGGTGGCTATCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGATTTTGGTTCCTCGCCCTGCCAACACTAACATCATGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCTGGTTTCTGGTCTTGACTACACTGACACTTTCAGTTCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTCTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACATGTTCATATGGAACAACCTCGTGGGTACATTGATCTTCGATTTCCCACTCATGTTTGTCTATTAAAGAACGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCCTGGTTTCAGCATTTTAGCTCATTTCTTCTCACACTTGGATTTTCTTGCAGTCGTGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCCTTATGTTGATGACATTATTGTTATCGGCAACAACTCATCTCTTATTGACAACTTTTTTCGCAAGCTTCCTCCTAAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCCTCACCCACTCCTGATGGTCTCTTTATTAGTTAA
Coding sequence (CDS)
ATGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTATTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGAATTCAGATCTGCAGCTAAGAATCCTGCTTGGGTGGCTATCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGATTTTGGTTCCTCGCCCTGCCAACACTAACATCATGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCTGGTTTCTGGTCTTGACTACACTGACACTTTCAGTTCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTCTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACATGTTCATATGGAACAACCTCGTGGGTACATTGATCTTCGATTTCCCACTCATGTTTGTCTATTAAAGAACGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCCTGGTTTCAGCATTTTAGCTCATTTCTTCTCACACTTGGATTTTCTTGCAGTCGTGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCCTTATGTTGATGACATTATTGTTATCGGCAACAACTCATCTCTTATTGACAACTTTTTTCGCAAGCTTCCTCCTAAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCCTCACCCACTCCTGATGGTCTCTTTATTAGTTAA
Protein sequence
MEVDTSLAGSTLPPSTSNSTSIEPIVDSSSLGTHPMITRAKTGIFKTRHPANLGILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLEASPTPDGLFIS
Homology
BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match:
Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)
HSP 1 Score: 266.9 bits (681), Expect = 2.8e-70
Identity = 146/321 (45.48%), Postives = 198/321 (61.68%), Query Frame = 0
Query: 5 TSLAGSTLPPSTSNSTSIEP------IVDSSS---LGTHPMITRAKTGIFKTRHPANLGI 64
T+ A S+ T S I P IV++++ L TH M TRAK GI K +L +
Sbjct: 889 TTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAV 948
Query: 65 LGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILV-PRPANTNIMGS 124
+L A +EP+ A K+ W M EI A N TW LV P P++ I+G
Sbjct: 949 --------SLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGC 1008
Query: 125 KWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWP 184
+W+F KY DG + R+KARLVAKGY GLDY +TFS V+K+T++R+VL +AV WP
Sbjct: 1009 RWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWP 1068
Query: 185 LQQLDVKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSF 244
++QLDV NAFL GTL + V+M QP G+ID P +VC L+ ALYGLKQAPRAW+ ++
Sbjct: 1069 IRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY 1128
Query: 245 LLTLGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDL 304
LLT+GF S +DTSLFV + +++Y+L YVDDI++ GN+ +L+ N L +F+ KD
Sbjct: 1129 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDH 1188
Query: 305 GSLSYFLGLEASPTPDGLFIS 316
L YFLG+EA P GL +S
Sbjct: 1189 EELHYFLGIEAKRVPTGLHLS 1201
BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match:
Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)
HSP 1 Score: 259.2 bits (661), Expect = 5.9e-68
Identity = 140/322 (43.48%), Postives = 196/322 (60.87%), Query Frame = 0
Query: 5 TSLAGSTLPPSTSNST-------SIEPIVD---SSSLGTHPMITRAKTGIFKTRHPANLG 64
TS++ P S+S ST PI+ + + TH M TRAK GI K +
Sbjct: 871 TSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYA 930
Query: 65 ILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILV-PRPANTNIMG 124
++L A++EP+ A K+ W M EI A N TW LV P P + I+G
Sbjct: 931 --------TSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVG 990
Query: 125 SKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKW 184
+W+F K+ DG + R+KARLVAKGY GLDY +TFS V+K+T++R+VL +AV W
Sbjct: 991 CRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSW 1050
Query: 185 PLQQLDVKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSS 244
P++QLDV NAFL GTL + V+M QP G++D P +VC L+ A+YGLKQAPRAW+ +
Sbjct: 1051 PIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRT 1110
Query: 245 FLLTLGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKD 304
+LLT+GF S +DTSLFV + ++IY+L YVDDI++ GN++ L+ + L +F+ K+
Sbjct: 1111 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1170
Query: 305 LGSLSYFLGLEASPTPDGLFIS 316
L YFLG+EA P GL +S
Sbjct: 1171 HEDLHYFLGIEAKRVPQGLHLS 1184
BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match:
P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)
HSP 1 Score: 169.9 bits (429), Expect = 4.7e-41
Identity = 88/236 (37.29%), Postives = 138/236 (58.47%), Query Frame = 0
Query: 82 AWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYT 141
+W ++ E+ A + N+TW + RP N NI+ S+WVF +KY G R+KARLVA+G+T
Sbjct: 905 SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFT 964
Query: 142 LVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVKNAFLNGTLIEHVHMEQPRGY 201
+DY +TF+ V + ++ R +LS+ + + Q+DVK AFLNGTL E ++M P+G
Sbjct: 965 QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG- 1024
Query: 202 IDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFSCSRADTSLFVFHQQ--SNLI 261
I +VC L A+YGLKQA R WF+ F L F S D +++ + + I
Sbjct: 1025 ISCN-SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1084
Query: 262 YLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLEASPTPDGLFIS 316
Y+L YVDD+++ + + ++NF R L KF DL + +F+G+ D +++S
Sbjct: 1085 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLS 1138
BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 92/239 (38.49%), Postives = 137/239 (57.32%), Query Frame = 0
Query: 70 EPKEFRSAAKNP---AWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIKYLPDG 129
EP+ + +P + M EE+ +LQ+N T+ LV P + KWVF++K D
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 869
Query: 130 FVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVKNAFLN 189
+ R+KARLV KG+ G+D+ + FS VVK T++R +LS+A + ++QLDVK AFL+
Sbjct: 870 KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929
Query: 190 GTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFSCSRAD 249
G L E ++MEQP G+ VC L +LYGLKQAPR W+ F SF+ + + + +D
Sbjct: 930 GDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSD 989
Query: 250 TSL-FVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLE 305
+ F ++N I LL YVDD++++G + LI L F KDLG LG++
Sbjct: 990 PCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMK 1048
BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match:
P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 6.9e-24
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 36 MITRAKTGIFKTRHPANLGILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQ 95
M+TR+K GI K +L I EPK A K+P W M EE+ AL
Sbjct: 1 MLTRSKAGINKLNPKYSLTI--------TTTIKKEPKSVIFALKDPGWCQAMQEELDALS 60
Query: 96 QNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSV 155
+N TWILVP P N NI+G KWVF+ K DG ++R KARLVAKG+ G+ + +T+S V
Sbjct: 61 RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120
Query: 156 VKATTVRVVLSIAVTNKWPLQQLDV 181
V+ T+R +L++A QQL+V
Sbjct: 121 VRTATIRTILNVA-------QQLEV 130
BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match:
A0A438E763 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_452 PE=4 SV=1)
HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 267/316 (84.49%), Postives = 286/316 (90.51%), Query Frame = 0
Query: 1 MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
++VDTSLAGS+LPP S+ SIE D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 621 VKVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 680
Query: 61 GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
GLLSALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR
Sbjct: 681 GLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 740
Query: 121 IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
KYLPDG VER KARLVAKGYT V GLDYTDTFS VVKATTVRVVLS+A+TNKWPL+QLD
Sbjct: 741 TKYLPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAITNKWPLRQLD 800
Query: 181 VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
VKNAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLG
Sbjct: 801 VKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLG 860
Query: 241 FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL +FATKDLGSLSY
Sbjct: 861 FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSY 920
Query: 301 FLGLEASPTPDGLFIS 316
FLGLEASPTPDGLFIS
Sbjct: 921 FLGLEASPTPDGLFIS 936
BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match:
A5AKX4 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015518 PE=4 SV=1)
HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 267/316 (84.49%), Postives = 285/316 (90.19%), Query Frame = 0
Query: 1 MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
++VDTSLAGS+LPP S+ SIE D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 753 VQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 812
Query: 61 GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
GLL ALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR
Sbjct: 813 GLLXALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 872
Query: 121 IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
KYLPDG VER KARLVAKGYT V GLDYTDTFS VVKATTVRVVLS+AVTNKWPL+QLD
Sbjct: 873 TKYLPDGSVERLKARLVAKGYTXVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLD 932
Query: 181 VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
VKNAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLG
Sbjct: 933 VKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLG 992
Query: 241 FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL +FATKDLGSLSY
Sbjct: 993 FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSY 1052
Query: 301 FLGLEASPTPDGLFIS 316
FLGLEASPTPDGLFIS
Sbjct: 1053 FLGLEASPTPDGLFIS 1068
BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match:
A0A438IYJ9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2517 PE=3 SV=1)
HSP 1 Score: 525.0 bits (1351), Expect = 2.1e-145
Identity = 266/314 (84.71%), Postives = 283/314 (90.13%), Query Frame = 0
Query: 3 VDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSSGL 62
VDTSLAGS+LPP S+ SIE D SSSLG+HPMITRAK GIFKTRHPANLG+LGSSGL
Sbjct: 637 VDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGL 696
Query: 63 LSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIK 122
LSALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR K
Sbjct: 697 LSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTK 756
Query: 123 YLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVK 182
YLPDG VER KARLVAKGYT V GLDYTD FS VVKATTVRVVLS+AVTNKWPL+QLDVK
Sbjct: 757 YLPDGSVERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVK 816
Query: 183 NAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFS 242
NAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLGFS
Sbjct: 817 NAFLNGTLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFS 876
Query: 243 CSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFL 302
CSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL +FATKDLGSL+YFL
Sbjct: 877 CSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNYFL 936
Query: 303 GLEASPTPDGLFIS 316
GLEASPTPDGLFIS
Sbjct: 937 GLEASPTPDGLFIS 950
BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match:
A0A438EBA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2065 PE=4 SV=1)
HSP 1 Score: 523.1 bits (1346), Expect = 8.1e-145
Identity = 265/316 (83.86%), Postives = 282/316 (89.24%), Query Frame = 0
Query: 1 MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
++VDTSLAGS+LPP S+ SIE D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 805 VQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 864
Query: 61 GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
GLLSALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILV RP NTNI+GSKWVFR
Sbjct: 865 GLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVHRPVNTNIVGSKWVFR 924
Query: 121 IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
KY PDG VER KARLVAKGYT V GLDYTDTFS VVKATTVRVVLS+AVTNKWPL+QLD
Sbjct: 925 TKYFPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLD 984
Query: 181 VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
V NAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSF LTLG
Sbjct: 985 VNNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFFLTLG 1044
Query: 241 FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL KFATKDLGSLSY
Sbjct: 1045 FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSKFATKDLGSLSY 1104
Query: 301 FLGLEASPTPDGLFIS 316
FLGLEASPTPDGLFIS
Sbjct: 1105 FLGLEASPTPDGLFIS 1120
BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match:
A0A438E275 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3495 PE=3 SV=1)
HSP 1 Score: 521.9 bits (1343), Expect = 1.8e-144
Identity = 264/316 (83.54%), Postives = 283/316 (89.56%), Query Frame = 0
Query: 1 MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
++VDTSLAG +LPP S+ SIE D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 714 VQVDTSLAGCSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 773
Query: 61 GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
GLL ALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR
Sbjct: 774 GLLFALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 833
Query: 121 IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
KYLPDG VER KARLVAKGYT V GLDYTD FS VVKATTVRVVLS+AVTNKWPL+QLD
Sbjct: 834 TKYLPDGSVERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLD 893
Query: 181 VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
VKNAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLG
Sbjct: 894 VKNAFLNGTLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLG 953
Query: 241 FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL +FATKDLGSL+Y
Sbjct: 954 FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNY 1013
Query: 301 FLGLEASPTPDGLFIS 316
FLGLEASPTPDGLFIS
Sbjct: 1014 FLGLEASPTPDGLFIS 1029
BLAST of CmoCh19G003380 vs. TAIR 10
Match:
AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )
HSP 1 Score: 210.3 bits (534), Expect = 2.2e-54
Identity = 109/257 (42.41%), Postives = 153/257 (59.53%), Query Frame = 0
Query: 62 LSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIK 121
L + + EP + A + W MD+EI A++ TW + P N +G KWV++IK
Sbjct: 77 LVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136
Query: 122 YLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVK 181
Y DG +ER+KARLVAKGYT G+D+ +TFS V K T+V+++L+I+ + L QLD+
Sbjct: 137 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 196
Query: 182 NAFLNGTLIEHVHMEQPRGYI----DLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLT 241
NAFLNG L E ++M+ P GY D P VC LK ++YGLKQA R WF FS L+
Sbjct: 197 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256
Query: 242 LGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSL 301
GF S +D + F+ + + +L YVDDII+ NN + +D +L F +DLG L
Sbjct: 257 FGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 316
Query: 302 SYFLGLEASPTPDGLFI 315
YFLGLE + + G+ I
Sbjct: 317 KYFLGLEIARSAAGINI 333
BLAST of CmoCh19G003380 vs. TAIR 10
Match:
ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )
HSP 1 Score: 112.8 bits (281), Expect = 4.9e-25
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 0
Query: 36 MITRAKTGIFKTRHPANLGILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQ 95
M+TR+K GI K +L I EPK A K+P W M EE+ AL
Sbjct: 1 MLTRSKAGINKLNPKYSLTI--------TTTIKKEPKSVIFALKDPGWCQAMQEELDALS 60
Query: 96 QNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSV 155
+N TWILVP P N NI+G KWVF+ K DG ++R KARLVAKG+ G+ + +T+S V
Sbjct: 61 RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120
Query: 156 VKATTVRVVLSIAVTNKWPLQQLDV 181
V+ T+R +L++A QQL+V
Sbjct: 121 VRTATIRTILNVA-------QQLEV 130
BLAST of CmoCh19G003380 vs. TAIR 10
Match:
ATMG00810.1 (DNA/RNA polymerases superfamily protein )
HSP 1 Score: 56.6 bits (135), Expect = 4.1e-08
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 259 IYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLEASPTPDGLFIS 316
+YLL YVDDI++ G++++L++ +L F+ KDLG + YFLG++ P GLF+S
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLS 57
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q94HW2 | 2.8e-70 | 45.48 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... | [more] |
Q9ZT94 | 5.9e-68 | 43.48 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... | [more] |
P04146 | 4.7e-41 | 37.29 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | [more] |
P10978 | 1.4e-40 | 38.49 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
P92520 | 6.9e-24 | 42.76 | Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A438E763 | 1.1e-146 | 84.49 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A5AKX4 | 1.9e-146 | 84.49 | Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... | [more] |
A0A438IYJ9 | 2.1e-145 | 84.71 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
A0A438EBA0 | 8.1e-145 | 83.86 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438E275 | 1.8e-144 | 83.54 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
Match Name | E-value | Identity | Description | |
AT4G23160.1 | 2.2e-54 | 42.41 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | [more] |
ATMG00820.1 | 4.9e-25 | 42.76 | Reverse transcriptase (RNA-dependent DNA polymerase) | [more] |
ATMG00810.1 | 4.1e-08 | 43.86 | DNA/RNA polymerases superfamily protein | [more] |