CmoCh19G003380 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cmo_Chr19: 2846462 .. 2848224 (+)
RNA-Seq Expression	CmoCh19G003380
Synteny	CmoCh19G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTACCAAATTTACTAGCACTTATTTCAAAACTCATTTACGTAATTCTGGCATCCACCATCAACTCTCGTGTCCATATACACTTGCTCAAAATGGTCGTGCCGAGAGAAAACATCGTCATGTGACTGAGCCTGGCTTGACCCTTCTCTTTCACTCTCATCTTTCTCCTCATTTTGGGTTGACGCTTTCAGCACGACAACTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTGAACTCATTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGATTGTCGTGTTTATCCTAATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCTGCAGCATAACTTGTATTTTTTTGGGTTATAGTCCTACGCATAAAGGGTTCCACTGTCTTGATCCCGCCACTACTAAGCTTTATATTATCCGTCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGCTCCCACGCTCAACCTCTTTCCTCTATTCCTATTTCAAATTTCTTGGAACCACATCTTTATCATATTGATTCATCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCACCACTTCATCATCGCCCATTCCTCGATCCAATTCATCCCCGTGTGATATTTGTTCTAACCTTGTGGATGAGTCTGTGTAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTATTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGAATTCAGATCTGCAGCTAAGAATCCTGCTTGGGTGGCTATCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGATTTTGGTTCCTCGCCCTGCCAACACTAACATCATGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCTGGTTTCTGGTCTTGACTACACTGACACTTTCAGTTCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTCTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACATGTTCATATGGAACAACCTCGTGGGTACATTGATCTTCGATTTCCCACTCATGTTTGTCTATTAAAGAACGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCCTGGTTTCAGCATTTTAGCTCATTTCTTCTCACACTTGGATTTTCTTGCAGTCGTGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCCTTATGTTGATGACATTATTGTTATCGGCAACAACTCATCTCTTATTGACAACTTTTTTCGCAAGCTTCCTCCTAAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCCTCACCCACTCCTGATGGTCTCTTTATTAGTTAA

mRNA sequence

ATGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTATTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGAATTCAGATCTGCAGCTAAGAATCCTGCTTGGGTGGCTATCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGATTTTGGTTCCTCGCCCTGCCAACACTAACATCATGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCTGGTTTCTGGTCTTGACTACACTGACACTTTCAGTTCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTCTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACATGTTCATATGGAACAACCTCGTGGGTACATTGATCTTCGATTTCCCACTCATGTTTGTCTATTAAAGAACGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCCTGGTTTCAGCATTTTAGCTCATTTCTTCTCACACTTGGATTTTCTTGCAGTCGTGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCCTTATGTTGATGACATTATTGTTATCGGCAACAACTCATCTCTTATTGACAACTTTTTTCGCAAGCTTCCTCCTAAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCCTCACCCACTCCTGATGGTCTCTTTATTAGTTAA

Coding sequence (CDS)

ATGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTATTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGGCTCATCTGGACTTCTTTCTGCTCTTCTTGCATCCACTGAGCCAAAAGAATTCAGATCTGCAGCTAAGAATCCTGCTTGGGTGGCTATCATGGATGAAGAAATTCGAGCGTTACAACAAAATGATACTTGGATTTTGGTTCCTCGCCCTGCCAACACTAACATCATGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATTCGTCGAGCGTTTCAAGGCTCGTCTTGTTGCCAAAGGTTATACTCTGGTTTCTGGTCTTGACTACACTGACACTTTCAGTTCGGTTGTCAAAGCTACCACTGTCCGTGTTGTGCTCTCTATTGCAGTCACAAATAAATGGCCTCTTCAACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACATGTTCATATGGAACAACCTCGTGGGTACATTGATCTTCGATTTCCCACTCATGTTTGTCTATTAAAGAACGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCCTGGTTTCAGCATTTTAGCTCATTTCTTCTCACACTTGGATTTTCTTGCAGTCGTGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCCTTATGTTGATGACATTATTGTTATCGGCAACAACTCATCTCTTATTGACAACTTTTTTCGCAAGCTTCCTCCTAAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCCTCACCCACTCCTGATGGTCTCTTTATTAGTTAA

Protein sequence

MEVDTSLAGSTLPPSTSNSTSIEPIVDSSSLGTHPMITRAKTGIFKTRHPANLGILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLEASPTPDGLFIS

Homology

[Close]

BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.8e-70
Identity = 146/321 (45.48%), Postives = 198/321 (61.68%), Query Frame = 0


Query: 5    TSLAGSTLPPSTSNSTSIEP------IVDSSS---LGTHPMITRAKTGIFKTRHPANLGI 64
            T+ A S+    T  S  I P      IV++++   L TH M TRAK GI K     +L +
Sbjct: 889  TTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAPLNTHSMGTRAKAGIIKPNPKYSLAV 948

Query: 65   LGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILV-PRPANTNIMGS 124
                    +L A +EP+    A K+  W   M  EI A   N TW LV P P++  I+G 
Sbjct: 949  --------SLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGC 1008

Query: 125  KWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWP 184
            +W+F  KY  DG + R+KARLVAKGY    GLDY +TFS V+K+T++R+VL +AV   WP
Sbjct: 1009 RWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWP 1068

Query: 185  LQQLDVKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSF 244
            ++QLDV NAFL GTL + V+M QP G+ID   P +VC L+ ALYGLKQAPRAW+    ++
Sbjct: 1069 IRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY 1128

Query: 245  LLTLGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDL 304
            LLT+GF  S +DTSLFV  +  +++Y+L YVDDI++ GN+ +L+ N    L  +F+ KD 
Sbjct: 1129 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDH 1188

Query: 305  GSLSYFLGLEASPTPDGLFIS 316
              L YFLG+EA   P GL +S
Sbjct: 1189 EELHYFLGIEAKRVPTGLHLS 1201

[Close]

BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 5.9e-68
Identity = 140/322 (43.48%), Postives = 196/322 (60.87%), Query Frame = 0


Query: 5    TSLAGSTLPPSTSNST-------SIEPIVD---SSSLGTHPMITRAKTGIFKTRHPANLG 64
            TS++    P S+S ST          PI+     + + TH M TRAK GI K     +  
Sbjct: 871  TSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYA 930

Query: 65   ILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILV-PRPANTNIMG 124
                    ++L A++EP+    A K+  W   M  EI A   N TW LV P P +  I+G
Sbjct: 931  --------TSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVG 990

Query: 125  SKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKW 184
             +W+F  K+  DG + R+KARLVAKGY    GLDY +TFS V+K+T++R+VL +AV   W
Sbjct: 991  CRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSW 1050

Query: 185  PLQQLDVKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSS 244
            P++QLDV NAFL GTL + V+M QP G++D   P +VC L+ A+YGLKQAPRAW+    +
Sbjct: 1051 PIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRT 1110

Query: 245  FLLTLGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKD 304
            +LLT+GF  S +DTSLFV  +  ++IY+L YVDDI++ GN++ L+ +    L  +F+ K+
Sbjct: 1111 YLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1170

Query: 305  LGSLSYFLGLEASPTPDGLFIS 316
               L YFLG+EA   P GL +S
Sbjct: 1171 HEDLHYFLGIEAKRVPQGLHLS 1184

[Close]

BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-41
Identity = 88/236 (37.29%), Postives = 138/236 (58.47%), Query Frame = 0


Query: 82   AWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYT 141
            +W   ++ E+ A + N+TW +  RP N NI+ S+WVF +KY   G   R+KARLVA+G+T
Sbjct: 905  SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFT 964

Query: 142  LVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVKNAFLNGTLIEHVHMEQPRGY 201
                +DY +TF+ V + ++ R +LS+ +     + Q+DVK AFLNGTL E ++M  P+G 
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG- 1024

Query: 202  IDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFSCSRADTSLFVFHQQ--SNLI 261
            I      +VC L  A+YGLKQA R WF+ F   L    F  S  D  +++  +   +  I
Sbjct: 1025 ISCN-SDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1084

Query: 262  YLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLEASPTPDGLFIS 316
            Y+L YVDD+++   + + ++NF R L  KF   DL  + +F+G+      D +++S
Sbjct: 1085 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLS 1138

[Close]

BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 92/239 (38.49%), Postives = 137/239 (57.32%), Query Frame = 0


Query: 70   EPKEFRSAAKNP---AWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIKYLPDG 129
            EP+  +    +P     +  M EE+ +LQ+N T+ LV  P     +  KWVF++K   D 
Sbjct: 810  EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 869

Query: 130  FVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVKNAFLN 189
             + R+KARLV KG+    G+D+ + FS VVK T++R +LS+A +    ++QLDVK AFL+
Sbjct: 870  KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929

Query: 190  GTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFSCSRAD 249
            G L E ++MEQP G+        VC L  +LYGLKQAPR W+  F SF+ +  +  + +D
Sbjct: 930  GDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSD 989

Query: 250  TSL-FVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLE 305
              + F    ++N I LL YVDD++++G +  LI      L   F  KDLG     LG++
Sbjct: 990  PCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMK 1048

[Close]

BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.9e-24
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 36  MITRAKTGIFKTRHPANLGILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQ 95
           M+TR+K GI K     +L I              EPK    A K+P W   M EE+ AL 
Sbjct: 1   MLTRSKAGINKLNPKYSLTI--------TTTIKKEPKSVIFALKDPGWCQAMQEELDALS 60

Query: 96  QNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSV 155
           +N TWILVP P N NI+G KWVF+ K   DG ++R KARLVAKG+    G+ + +T+S V
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120

Query: 156 VKATTVRVVLSIAVTNKWPLQQLDV 181
           V+  T+R +L++A       QQL+V
Sbjct: 121 VRTATIRTILNVA-------QQLEV 130

[Close]

BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match: A0A438E763 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_452 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 267/316 (84.49%), Postives = 286/316 (90.51%), Query Frame = 0


Query: 1   MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
           ++VDTSLAGS+LPP  S+  SIE   D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 621 VKVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 680

Query: 61  GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
           GLLSALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR
Sbjct: 681 GLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 740

Query: 121 IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
            KYLPDG VER KARLVAKGYT V GLDYTDTFS VVKATTVRVVLS+A+TNKWPL+QLD
Sbjct: 741 TKYLPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAITNKWPLRQLD 800

Query: 181 VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
           VKNAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLG
Sbjct: 801 VKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLG 860

Query: 241 FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
           FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL  +FATKDLGSLSY
Sbjct: 861 FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSY 920

Query: 301 FLGLEASPTPDGLFIS 316
           FLGLEASPTPDGLFIS
Sbjct: 921 FLGLEASPTPDGLFIS 936

[Close]

BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match: A5AKX4 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_015518 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.9e-146
Identity = 267/316 (84.49%), Postives = 285/316 (90.19%), Query Frame = 0


Query: 1    MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
            ++VDTSLAGS+LPP  S+  SIE   D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 753  VQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 812

Query: 61   GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
            GLL ALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR
Sbjct: 813  GLLXALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 872

Query: 121  IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
             KYLPDG VER KARLVAKGYT V GLDYTDTFS VVKATTVRVVLS+AVTNKWPL+QLD
Sbjct: 873  TKYLPDGSVERLKARLVAKGYTXVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLD 932

Query: 181  VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
            VKNAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLG
Sbjct: 933  VKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLG 992

Query: 241  FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
            FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL  +FATKDLGSLSY
Sbjct: 993  FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSY 1052

Query: 301  FLGLEASPTPDGLFIS 316
            FLGLEASPTPDGLFIS
Sbjct: 1053 FLGLEASPTPDGLFIS 1068

[Close]

BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match: A0A438IYJ9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2517 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.1e-145
Identity = 266/314 (84.71%), Postives = 283/314 (90.13%), Query Frame = 0


Query: 3   VDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSSGL 62
           VDTSLAGS+LPP  S+  SIE   D SSSLG+HPMITRAK GIFKTRHPANLG+LGSSGL
Sbjct: 637 VDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGL 696

Query: 63  LSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIK 122
           LSALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR K
Sbjct: 697 LSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTK 756

Query: 123 YLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVK 182
           YLPDG VER KARLVAKGYT V GLDYTD FS VVKATTVRVVLS+AVTNKWPL+QLDVK
Sbjct: 757 YLPDGSVERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVK 816

Query: 183 NAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLGFS 242
           NAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLGFS
Sbjct: 817 NAFLNGTLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFS 876

Query: 243 CSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFL 302
           CSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL  +FATKDLGSL+YFL
Sbjct: 877 CSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNYFL 936

Query: 303 GLEASPTPDGLFIS 316
           GLEASPTPDGLFIS
Sbjct: 937 GLEASPTPDGLFIS 950

[Close]

BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match: A0A438EBA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2065 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 8.1e-145
Identity = 265/316 (83.86%), Postives = 282/316 (89.24%), Query Frame = 0


Query: 1    MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
            ++VDTSLAGS+LPP  S+  SIE   D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 805  VQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 864

Query: 61   GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
            GLLSALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILV RP NTNI+GSKWVFR
Sbjct: 865  GLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVHRPVNTNIVGSKWVFR 924

Query: 121  IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
             KY PDG VER KARLVAKGYT V GLDYTDTFS VVKATTVRVVLS+AVTNKWPL+QLD
Sbjct: 925  TKYFPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLD 984

Query: 181  VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
            V NAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSF LTLG
Sbjct: 985  VNNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFFLTLG 1044

Query: 241  FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
            FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL  KFATKDLGSLSY
Sbjct: 1045 FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSKFATKDLGSLSY 1104

Query: 301  FLGLEASPTPDGLFIS 316
            FLGLEASPTPDGLFIS
Sbjct: 1105 FLGLEASPTPDGLFIS 1120

[Close]

BLAST of CmoCh19G003380 vs. ExPASy TrEMBL
Match: A0A438E275 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3495 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.8e-144
Identity = 264/316 (83.54%), Postives = 283/316 (89.56%), Query Frame = 0


Query: 1    MEVDTSLAGSTLPPSTSNSTSIEPIVD-SSSLGTHPMITRAKTGIFKTRHPANLGILGSS 60
            ++VDTSLAG +LPP  S+  SIE   D SSSLG+HPMITRAK GIFKTRHPANLG+LGSS
Sbjct: 714  VQVDTSLAGCSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 773

Query: 61   GLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFR 120
            GLL ALLASTEPK F+SAAKNPAW+A MDEE++ALQQN TWILVPRP NTNI+GSKWVFR
Sbjct: 774  GLLFALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 833

Query: 121  IKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLD 180
             KYLPDG VER KARLVAKGYT V GLDYTD FS VVKATTVRVVLS+AVTNKWPL+QLD
Sbjct: 834  TKYLPDGSVERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLD 893

Query: 181  VKNAFLNGTLIEHVHMEQPRGYIDLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLTLG 240
            VKNAFLNGTL EHV+MEQP GYID RFPTHVCLLK ALYGLKQAPRAWFQ FSSFLLTLG
Sbjct: 894  VKNAFLNGTLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLG 953

Query: 241  FSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSY 300
            FSCSRADTSLFVFHQQS+LIYLL YVDDIIV GNN SL+D+F RKL  +FATKDLGSL+Y
Sbjct: 954  FSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNY 1013

Query: 301  FLGLEASPTPDGLFIS 316
            FLGLEASPTPDGLFIS
Sbjct: 1014 FLGLEASPTPDGLFIS 1029

[Close]

BLAST of CmoCh19G003380 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-54
Identity = 109/257 (42.41%), Postives = 153/257 (59.53%), Query Frame = 0


Query: 62  LSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQQNDTWILVPRPANTNIMGSKWVFRIK 121
           L  +  + EP  +  A +   W   MD+EI A++   TW +   P N   +G KWV++IK
Sbjct: 77  LVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIK 136

Query: 122 YLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSVVKATTVRVVLSIAVTNKWPLQQLDVK 181
           Y  DG +ER+KARLVAKGYT   G+D+ +TFS V K T+V+++L+I+    + L QLD+ 
Sbjct: 137 YNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDIS 196

Query: 182 NAFLNGTLIEHVHMEQPRGYI----DLRFPTHVCLLKNALYGLKQAPRAWFQHFSSFLLT 241
           NAFLNG L E ++M+ P GY     D   P  VC LK ++YGLKQA R WF  FS  L+ 
Sbjct: 197 NAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIG 256

Query: 242 LGFSCSRADTSLFVFHQQSNLIYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSL 301
            GF  S +D + F+    +  + +L YVDDII+  NN + +D    +L   F  +DLG L
Sbjct: 257 FGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPL 316

Query: 302 SYFLGLEASPTPDGLFI 315
            YFLGLE + +  G+ I
Sbjct: 317 KYFLGLEIARSAAGINI 333

[Close]

BLAST of CmoCh19G003380 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-25
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 36  MITRAKTGIFKTRHPANLGILGSSGLLSALLASTEPKEFRSAAKNPAWVAIMDEEIRALQ 95
           M+TR+K GI K     +L I              EPK    A K+P W   M EE+ AL 
Sbjct: 1   MLTRSKAGINKLNPKYSLTI--------TTTIKKEPKSVIFALKDPGWCQAMQEELDALS 60

Query: 96  QNDTWILVPRPANTNIMGSKWVFRIKYLPDGFVERFKARLVAKGYTLVSGLDYTDTFSSV 155
           +N TWILVP P N NI+G KWVF+ K   DG ++R KARLVAKG+    G+ + +T+S V
Sbjct: 61  RNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPV 120

Query: 156 VKATTVRVVLSIAVTNKWPLQQLDV 181
           V+  T+R +L++A       QQL+V
Sbjct: 121 VRTATIRTILNVA-------QQLEV 130

[Close]

BLAST of CmoCh19G003380 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-08
Identity = 25/57 (43.86%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 259 IYLLPYVDDIIVIGNNSSLIDNFFRKLPPKFATKDLGSLSYFLGLEASPTPDGLFIS 316
           +YLL YVDDI++ G++++L++    +L   F+ KDLG + YFLG++    P GLF+S
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLS 57

The following BLAST results are available for this feature:

BLAST of CmoCh19G003380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.8e-70	45.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.9e-68	43.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	4.7e-41	37.29	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.4e-40	38.49	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	6.9e-24	42.76	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh19G003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438E763	1.1e-146	84.49	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5AKX4	1.9e-146	84.49	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438IYJ9	2.1e-145	84.71	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438EBA0	8.1e-145	83.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438E275	1.8e-144	83.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of CmoCh19G003380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.2e-54	42.41	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.9e-25	42.76	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	4.1e-08	43.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 97..306 e-value: 1.6E-54 score: 185.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 97..294
None	No IPR available	PANTHER	PTHR11439:SF331	SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED	coord: 97..294
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 97..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003380.1	CmoCh19G003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006412	translation
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome