CmoCh19G003110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G003110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein SHI RELATED SEQUENCE 1-like
Location	Cmo_Chr19: 2339193 .. 2340366 (-)
RNA-Seq Expression	CmoCh19G003110
Synteny	CmoCh19G003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACAAGAGACAGAGACAGTTTTGGTTTAGCTGTAACGATTCTCAGTACTTAACACGGCGGCGTTTGCAATCCACCTTCCAAATTCCTCCGGTACCCTCCTTCTCTCTCTCTCTCTAAACCCTAAAAACCCTAATAACCTTCGTGAATGACCTAAATAATATTGGGTTGTAGAAATCATGACGGGGTTGTTCTATTTAAGTGAAAAACAAGAGGAAAATCAAGAACAAAGAGGAAGAGAACAGCAATTGTTCTTGTCCAAGGGCTTGGAGATATGGCCACAACAAAATCTAGAGAATTACATTTCATTTGGAGTGGGTCCAACTCGGAGGAACTTCATGATCAACGCCTCCGATCGTCCCGATCAGTTTGTCCCGAGATTAGGGTTTTCGATCAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGATGTAGAACTTGTTGTAAGAGCCGAGGGTTTCATTGCCAAACTCATGTCAAAAGTACTTGGGTTCCGGCTACCAAGCGCCGGGAACGGCAACTACAACGTCACCAAATTGTTCGGCAACAATCCCAACTAGATCAGCCCGATCAGACCGCTCCGGTCGACACTCCAGGTGATTAATTTTCGATGAAATTCATAAGCTTAAGTCGAAAAATTACGATGATAATGGATGATTCAAACCCTAGGGTGAGATGGGTGTAGTGTTTCATTAGAATTACAATTATTTTTGTTCTTCTAATCGATGTGATTTGAAATTAGGGTTGGAAGTTGCGAATTTTCCAGCTGAATTCAACTCCTCAGCCGTTTTTCGGTGCGTGAAAGTCAGTGCCATCGACGATGTCGAAGAACAATTCGCATATCAAACATCAGTGAACATTGGTGGGCATATGTTCAAAGGAATTCTTTACGACCAAGGTCCTGAAAGCACTCCGAATTTGAGCACGGGCGGCGAGAGCTCGTATTGCTACGGCGGAGAAGACGATAATCAAGCGCTCGAGCTGGTGATCGGAGCATCGAACGGAGGGTGGAGGAGTAACAAACCAACCCCATTTATGGAGTCTTCTCTATATCCCATCCCAATCAACACATTCAACACGGGTACGCAAAATTTCCCTTCCTCTAGAACTTGAAAGAAAAAAGGGTTGAAGTTGATTGTGTTGAATTCATGAACTAGAAG

mRNA sequence

AGACAAGAGACAGAGACAGTTTTGGTTTAGCTGTAACGATTCTCAGTACTTAACACGGCGGCGTTTGCAATCCACCTTCCAAATTCCTCCGGTACCCTCCTTCTCTCTCTCTCTCTAAACCCTAAAAACCCTAATAACCTTCGTGAATGACCTAAATAATATTGGGTTGTAGAAATCATGACGGGGTTGTTCTATTTAAGTGAAAAACAAGAGGAAAATCAAGAACAAAGAGGAAGAGAACAGCAATTGTTCTTGTCCAAGGGCTTGGAGATATGGCCACAACAAAATCTAGAGAATTACATTTCATTTGGAGTGGGTCCAACTCGGAGGAACTTCATGATCAACGCCTCCGATCGTCCCGATCAGTTTGTCCCGAGATTAGGGTTTTCGATCAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGATGTAGAACTTGTTGTAAGAGCCGAGGGTTTCATTGCCAAACTCATGTCAAAAGTACTTGGGTTCCGGCTACCAAGCGCCGGGAACGGCAACTACAACGTCACCAAATTGTTCGGCAACAATCCCAACTAGATCAGCCCGATCAGACCGCTCCGGTCGACACTCCAGGGTTGGAAGTTGCGAATTTTCCAGCTGAATTCAACTCCTCAGCCGTTTTTCGGTGCGTGAAAGTCAGTGCCATCGACGATGTCGAAGAACAATTCGCATATCAAACATCAGTGAACATTGGTGGGCATATGTTCAAAGGAATTCTTTACGACCAAGGTCCTGAAAGCACTCCGAATTTGAGCACGGGCGGCGAGAGCTCGTATTGCTACGGCGGAGAAGACGATAATCAAGCGCTCGAGCTGGTGATCGGAGCATCGAACGGAGGGTGGAGGAGTAACAAACCAACCCCATTTATGGAGTCTTCTCTATATCCCATCCCAATCAACACATTCAACACGGGTACGCAAAATTTCCCTTCCTCTAGAACTTGAAAGAAAAAAGGGTTGAAGTTGATTGTGTTGAATTCATGAACTAGAAG

Coding sequence (CDS)

ATGACGGGGTTGTTCTATTTAAGTGAAAAACAAGAGGAAAATCAAGAACAAAGAGGAAGAGAACAGCAATTGTTCTTGTCCAAGGGCTTGGAGATATGGCCACAACAAAATCTAGAGAATTACATTTCATTTGGAGTGGGTCCAACTCGGAGGAACTTCATGATCAACGCCTCCGATCGTCCCGATCAGTTTGTCCCGAGATTAGGGTTTTCGATCAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGATGTAGAACTTGTTGTAAGAGCCGAGGGTTTCATTGCCAAACTCATGTCAAAAGTACTTGGGTTCCGGCTACCAAGCGCCGGGAACGGCAACTACAACGTCACCAAATTGTTCGGCAACAATCCCAACTAGATCAGCCCGATCAGACCGCTCCGGTCGACACTCCAGGGTTGGAAGTTGCGAATTTTCCAGCTGAATTCAACTCCTCAGCCGTTTTTCGGTGCGTGAAAGTCAGTGCCATCGACGATGTCGAAGAACAATTCGCATATCAAACATCAGTGAACATTGGTGGGCATATGTTCAAAGGAATTCTTTACGACCAAGGTCCTGAAAGCACTCCGAATTTGAGCACGGGCGGCGAGAGCTCGTATTGCTACGGCGGAGAAGACGATAATCAAGCGCTCGAGCTGGTGATCGGAGCATCGAACGGAGGGTGGAGGAGTAACAAACCAACCCCATTTATGGAGTCTTCTCTATATCCCATCCCAATCAACACATTCAACACGGGTACGCAAAATTTCCCTTCCTCTAGAACTTGA

Protein sequence

MTGLFYLSEKQEENQEQRGREQQLFLSKGLEIWPQQNLENYISFGVGPTRRNFMINASDRPDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQRHQIVRQQSQLDQPDQTAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPTPFMESSLYPIPINTFNTGTQNFPSSRT

Homology

[Close]

BLAST of CmoCh19G003110 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.4e-54
Identity = 128/292 (43.84%), Postives = 171/292 (58.56%), Query Frame = 0


Query: 13  ENQEQRGREQQLFLSKGLEIWPQQNL-ENYISFGVGPTRRNFMINASDRPDQFVPRLGF- 72
           ++Q Q  ++QQ F      I+P Q+L    +  GVGP+R  F I+A D       R GF 
Sbjct: 65  QHQHQHHQQQQQFRH---PIYPLQDLYSTDVGLGVGPSRSGFDISAGDHE---ASRSGFV 124

Query: 73  -------SINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQRH 132
                   I+CQDCGNQAKKDC H+RCRTCCKSRGF CQTHVKSTWVPA KRRERQ Q  
Sbjct: 125 MMRSGGGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLA 184

Query: 133 QIVRQQS-------------QLDQPDQTA------PVDTPGLEVANFPAEFNSSAVFRCV 192
            + +QQ              Q + P  ++      P +T GLEV  FP++  +SAVF+C+
Sbjct: 185 ALQQQQQGHNNNNNNHKNKRQREDPSASSLVSTRLPSNTNGLEVGKFPSKVRTSAVFQCI 244

Query: 193 KVSAIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPN--------LSTGGESSYCYGG 252
           ++S+I+D E+Q AYQ +V+IGGH+FKGILYDQG ES  N         S+GG +      
Sbjct: 245 QMSSIEDDEDQLAYQAAVSIGGHVFKGILYDQGHESQYNNMVAAGGDTSSGGSAGGVQHH 304

Query: 253 EDDNQALELVIGASNGGWRSNKPTPFMESSLYPIPINTFN-TGTQNFPSSRT 268
             ++ A+      S G   +  P+ F++ SL+P P++TF   GTQ FP SR+
Sbjct: 305 HHNSAAVATATTTSGGDATAAGPSNFLDPSLFPAPLSTFMVAGTQFFPPSRS 350

[Close]

BLAST of CmoCh19G003110 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 4.3e-51
Identity = 132/287 (45.99%), Postives = 164/287 (57.14%), Query Frame = 0


Query: 35  QQNLENYIS---FGVGPTRRN-FMIN-------ASDRPDQFVPRLGFS------INCQDC 94
           QQ L+ Y S    GVGP+  N F I+       A       + R G S      ++CQDC
Sbjct: 88  QQRLDLYSSAAGLGVGPSNHNQFDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDC 147

Query: 95  GNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQRHQIVRQQSQLDQPDQ 154
           GNQAKKDCSH+RCRTCCKSRGF C THV+STWVPA KRRERQ Q+   V+ Q+QL + + 
Sbjct: 148 GNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQ-QQLATVQPQTQLPRGES 207

Query: 155 ------------------TAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQ 214
                             T      GLEV NFPAE +SSAVFRCV+VS+++D EE+FAYQ
Sbjct: 208 VPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQ 267

Query: 215 TSVNIGGHMFKGILYDQGPESTP----NLSTGGESSYCYGGEDDNQALELVIGASNGGWR 268
           T+V+IGGH+FKGILYD GP S+     N+   GESS   GG    Q L L+   S     
Sbjct: 268 TAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGA---QQLNLITAGSVTVAT 327

[Close]

BLAST of CmoCh19G003110 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 9.9e-48
Identity = 113/255 (44.31%), Postives = 146/255 (57.25%), Query Frame = 0


Query: 35  QQNLENYIS---FGVGPTRRNFMINASDRPDQFVPRLGF-SINCQDCGNQAKKDCSHLRC 94
           QQ L+ Y S    GVGP+ R+ +  +           G    +CQDCGNQ+KKDCSH+RC
Sbjct: 77  QQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRC 136

Query: 95  RTCCKSRGFHCQTHVKSTWVPATKRRERQLQRH----------QIVRQQSQLDQPDQTAP 154
           RTCCKSRG  C THVKSTWVPA KRRERQ Q             + ++Q +      T+ 
Sbjct: 137 RTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPKRQRERIPARSTSM 196

Query: 155 V-------DTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGIL 214
                   +T GLEV NFP E +SSAVFRCV+VS++DD EE++AY+T+V+IGGH+FKG+L
Sbjct: 197 AYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVL 256

Query: 215 YDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPTPFMESSL-YPIPI 268
           YDQGP    +   G +            +    +  +NG   S        +SL YP PI
Sbjct: 257 YDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPI 316

[Close]

BLAST of CmoCh19G003110 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 9.2e-46
Identity = 134/352 (38.07%), Postives = 172/352 (48.86%), Query Frame = 0


Query: 1   MTGLFYL--------SEKQEENQEQRGREQQ-----LFL--------SKGLEIWPQQNLE 60
           M G FYL        + KQ+ +Q  +    Q     L+L        +KG EIWP Q  +
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQ 60

Query: 61  ------------------NYISFGVGPTRRN------------FMINASDRPDQFVPRLG 120
                             N+ SFG+ P+  +            F + +   P  F     
Sbjct: 61  QQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQ 120

Query: 121 FSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRER-----QLQRHQ 180
             +NCQDCGNQAKKDC H+RCRTCCKSRGFHCQTHVKSTWVPA KRRER      LQ H 
Sbjct: 121 GGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHS 180

Query: 181 I----------VRQQSQLDQPDQ--------TAPVDT--------PGLEVA-NFPAEFNS 240
                      +R+ S  D  D         +A  +T         GLEV+ + P E NS
Sbjct: 181 ASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNS 240

Query: 241 SAVFRCVKVSAI--DDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYG 268
            A+FRCV+VS+I  D+ ++ +AYQT+VNIGGH+FKGILYDQGPE   N      +S    
Sbjct: 241 PAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATT 300

[Close]

BLAST of CmoCh19G003110 vs. ExPASy Swiss-Prot
Match: Q9FXH7 (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.3e-43
Identity = 135/350 (38.57%), Postives = 169/350 (48.29%), Query Frame = 0


Query: 1   MTGLFYLS----EKQEENQEQRGREQQ----LFL--------SKGLEIWPQQNLE----- 60
           M GLFYL      KQ+ +QE+   E +    L+L        +KG EI+P Q  +     
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSNNYLYLYKDEIYNNNKGFEIFPPQYFQQQQQQ 60

Query: 61  -------NYISFGVGPTRRNFMINASDRPDQF------------------VPRLGFSINC 120
                  N  SFG+ P+  N   N S     +                  V R G ++NC
Sbjct: 61  NHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQG-NMNC 120

Query: 121 QDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQ---------RHQI 180
           QDCGNQAKKDC H+RCRTCCKSRGF CQTHVKSTWV A KRRERQ Q         R   
Sbjct: 121 QDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDAN 180

Query: 181 VRQQSQLDQPD------------------QTAPVDTPGLEVANFPAEFNSSAVFRCVKVS 240
            R     D  D                  +     + GLE ++ P E +S AVFRC++VS
Sbjct: 181 SRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVS 240

Query: 241 AIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTP---NLSTGGESSYCYG----GEDDN 267
           +IDD +E++AYQT+V+IGGH+FKGILYDQGP S     + S  GE+S+ +         +
Sbjct: 241 SIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPS 300

[Close]

BLAST of CmoCh19G003110 vs. ExPASy TrEMBL
Match: A0A6J1HH62 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC111464024 PE=3 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 6.2e-154
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MTGLFYLSEKQEENQEQRGREQQLFLSKGLEIWPQQNLENYISFGVGPTRRNFMINASDR 60
           MTGLFYLSEKQEENQEQRGREQQLFLSKGLEIWPQQNLENYISFGVGPTRRNFMINASDR
Sbjct: 1   MTGLFYLSEKQEENQEQRGREQQLFLSKGLEIWPQQNLENYISFGVGPTRRNFMINASDR 60

Query: 61  PDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQL 120
           PDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQL
Sbjct: 61  PDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQL 120

Query: 121 QRHQIVRQQSQLDQPDQTAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQT 180
           QRHQIVRQQSQLDQPDQTAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQT
Sbjct: 121 QRHQIVRQQSQLDQPDQTAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQT 180

Query: 181 SVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPT 240
           SVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPT
Sbjct: 181 SVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPT 240

Query: 241 PFMESSLYPIPINTFNTGTQNFPSSRT 268
           PFMESSLYPIPINTFNTGTQNFPSSRT
Sbjct: 241 PFMESSLYPIPINTFNTGTQNFPSSRT 267

[Close]

BLAST of CmoCh19G003110 vs. ExPASy TrEMBL
Match: A0A6J1HUZ8 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467062 PE=3 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.6e-141
Identity = 252/280 (90.00%), Postives = 259/280 (92.50%), Query Frame = 0


Query: 1   MTGLFYLSEKQEENQEQRGREQQLFLSKGLEIWPQQNLENYISFGVGPTRRNFMINASDR 60
           MTGLFYLSEKQEENQEQRG+EQQLFLSKGLEIWPQQNLENYISFGVGP+RRNFMINASD 
Sbjct: 1   MTGLFYLSEKQEENQEQRGKEQQLFLSKGLEIWPQQNLENYISFGVGPSRRNFMINASDG 60

Query: 61  PDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQL 120
            DQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQL
Sbjct: 61  HDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQL 120

Query: 121 QRHQIVRQQSQLDQPDQT-------------APVDTPGLEVANFPAEFNSSAVFRCVKVS 180
           QRHQIVRQQS+LD+PDQT             AP+DT GLEV NFPAEFNSSAVFRCVKVS
Sbjct: 121 QRHQIVRQQSRLDRPDQTTSKRHGENQSLCVAPIDTSGLEVVNFPAEFNSSAVFRCVKVS 180

Query: 181 AIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYGGEDDNQALELVI 240
           AIDDVEEQ AYQTSVNIGG MFKGILYDQGP+ST NLSTGGESSYCYGGEDD+QALELVI
Sbjct: 181 AIDDVEEQLAYQTSVNIGGRMFKGILYDQGPKSTLNLSTGGESSYCYGGEDDSQALELVI 240

Query: 241 GASNGGWRSNKPTPFMESSLYPIPINTFNTGTQNFPSSRT 268
           GASNGGWRSNKPTPFMESSLYPIPINTF TGTQNFPSSRT
Sbjct: 241 GASNGGWRSNKPTPFMESSLYPIPINTFTTGTQNFPSSRT 280

[Close]

BLAST of CmoCh19G003110 vs. ExPASy TrEMBL
Match: A0A6J1FN62 (protein SHI RELATED SEQUENCE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445787 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.4e-100
Identity = 205/301 (68.11%), Postives = 220/301 (73.09%), Query Frame = 0


Query: 1   MTGLFYLSEKQEENQEQRGREQQLFL----------SKGLEIWPQ-----QNLENYISFG 60
           MTGL YL  KQE++QEQRGREQQLFL          SKGLEIWPQ     Q +ENYISFG
Sbjct: 1   MTGLLYLGGKQEDDQEQRGREQQLFLYNNRNNEEIYSKGLEIWPQYGQQHQAVENYISFG 60

Query: 61  VGPTRRNFMINASD------RPDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGF 120
           VGP+R N MINASD      R        G  INCQDCGNQAKKDC+HLRCRTCCKSRGF
Sbjct: 61  VGPSRMNLMINASDHEFTMMRQGAATGGGGGGINCQDCGNQAKKDCTHLRCRTCCKSRGF 120

Query: 121 HCQTHVKSTWVPATKRRERQLQRHQIVRQQSQLDQPDQTAP-------------VDTPGL 180
           HCQTHVKSTWVPA KRRERQ QR Q   QQ + DQ DQT P               T GL
Sbjct: 121 HCQTHVKSTWVPAAKRRERQQQRQQ---QQFRPDQFDQTTPKRHRETQPSIPPAAVTSGL 180

Query: 181 EVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLST 240
           E+A+FPAEFNS AVFRCVKVSAID+VEEQ AYQT+VNIGGHMFKGILYD GPES+ NLST
Sbjct: 181 ELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPESSQNLST 240

Query: 241 GGESSYCYGGEDDNQALELVIGASNGGWRSNKPTPFMESSLYPIPINTFNTGTQNFPSSR 268
           GGESSY +GG+DD Q L+LVIGASN   R N    F+ESSLYPIPINTF  G QNFPSSR
Sbjct: 241 GGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSR 298

[Close]

BLAST of CmoCh19G003110 vs. ExPASy TrEMBL
Match: A0A0A0K1X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G051450 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.2e-98
Identity = 210/319 (65.83%), Postives = 232/319 (72.73%), Query Frame = 0


Query: 1   MTGLFYLSEKQEENQEQ---RGREQQLFL-------------SKGLEIWPQQNLENYISF 60
           M GL YL  KQEE++E+    GREQQLFL             SKGLEIWPQQN+ENYISF
Sbjct: 1   MRGLLYLGGKQEEDEEESLRSGREQQLFLYSTNNNNNNEEIYSKGLEIWPQQNVENYISF 60

Query: 61  G-VGPTRRNFMINASDRPDQFVPRLGFS-----------INCQDCGNQAKKDCSHLRCRT 120
           G VGPTR+N +INASD   +FV RLGFS           +NCQDCGNQAKKDCSHLRCRT
Sbjct: 61  GVVGPTRKNLIINASDH--EFVSRLGFSMMRGGSGGGGGMNCQDCGNQAKKDCSHLRCRT 120

Query: 121 CCKSRGFHCQTHVKSTWVPATKRRERQLQRHQIV----RQQSQLDQPDQT---------- 180
           CCKSRGF CQTHVKSTWVPA KRRERQ QRHQI     RQQSQ +Q DQT          
Sbjct: 121 CCKSRGFQCQTHVKSTWVPAAKRRERQQQRHQIFQNHRRQQSQANQSDQTTLKRLGENQP 180

Query: 181 ---APVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGILYD 240
               P  T GL+VA+FPAEFNS A FRCVKVSAID+VEEQ AYQTSVN+GGHMFKGILYD
Sbjct: 181 LLATPTVTSGLQVAHFPAEFNSPANFRCVKVSAIDNVEEQLAYQTSVNVGGHMFKGILYD 240

Query: 241 QGPESTPNLS--TGGESSYCYGGEDDNQALELVIGASNGGWR---SNKPTPFMESSLYPI 268
            GPES+ N+S   GGESSYC+ GEDD+Q L+LVIGASNG  R   S+   PF+ESSLYPI
Sbjct: 241 HGPESSQNMSIDIGGESSYCHRGEDDSQLLDLVIGASNGSGRVSQSSSSAPFVESSLYPI 300

[Close]

BLAST of CmoCh19G003110 vs. ExPASy TrEMBL
Match: A0A6J1J314 (protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480884 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.7e-98
Identity = 202/301 (67.11%), Postives = 218/301 (72.43%), Query Frame = 0


Query: 1   MTGLFYLSEKQEENQEQRGREQQLFL----------SKGLEIWPQ-----QNLENYISFG 60
           MTGL YL  KQE++QEQRGREQQLFL          SKGLEIWPQ     Q +ENYISFG
Sbjct: 1   MTGLLYLGGKQEDDQEQRGREQQLFLYNSRNNEEIYSKGLEIWPQYGQQHQAVENYISFG 60

Query: 61  VGPTRRNFMINASD------RPDQFVPRLGFSINCQDCGNQAKKDCSHLRCRTCCKSRGF 120
           VGP+R N MINASD      R        G  INCQDCGNQAKKDCSHLRCRTCCKSRGF
Sbjct: 61  VGPSRMNLMINASDHEFTMMRQGAATGGGGGGINCQDCGNQAKKDCSHLRCRTCCKSRGF 120

Query: 121 HCQTHVKSTWVPATKRRERQLQRHQIVRQQSQLDQPDQTA-------------PVDTPGL 180
            CQTHVKSTWVPA KRRERQ QR    +QQ + DQ DQT                 T GL
Sbjct: 121 QCQTHVKSTWVPAAKRRERQQQR----QQQFRPDQFDQTTHKCHRETQPSIPPATVTSGL 180

Query: 181 EVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLST 240
           E+A+FPAEFNS AVFRCVKVSAID+VEEQ AYQT+VNIGGHMFKGILYD GPE++ NLST
Sbjct: 181 ELAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDHGPETSQNLST 240

Query: 241 GGESSYCYGGEDDNQALELVIGASNGGWRSNKPTPFMESSLYPIPINTFNTGTQNFPSSR 268
           GGESSY +GG+DD Q L+LVIGASN   R N    F+ESSLYPIPINTF  G QNFPSSR
Sbjct: 241 GGESSYSHGGDDDGQGLDLVIGASNSFGRVNPSASFVESSLYPIPINTFTPGMQNFPSSR 297

[Close]

BLAST of CmoCh19G003110 vs. TAIR 10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 203.0 bits (515), Expect = 3.0e-52
Identity = 132/287 (45.99%), Postives = 164/287 (57.14%), Query Frame = 0


Query: 35  QQNLENYIS---FGVGPTRRN-FMIN-------ASDRPDQFVPRLGFS------INCQDC 94
           QQ L+ Y S    GVGP+  N F I+       A       + R G S      ++CQDC
Sbjct: 88  QQRLDLYSSAAGLGVGPSNHNQFDISGETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDC 147

Query: 95  GNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQRHQIVRQQSQLDQPDQ 154
           GNQAKKDCSH+RCRTCCKSRGF C THV+STWVPA KRRERQ Q+   V+ Q+QL + + 
Sbjct: 148 GNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQ-QQLATVQPQTQLPRGES 207

Query: 155 ------------------TAPVDTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQ 214
                             T      GLEV NFPAE +SSAVFRCV+VS+++D EE+FAYQ
Sbjct: 208 VPKRHRENLPATSSSLVCTRIPSHSGLEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQ 267

Query: 215 TSVNIGGHMFKGILYDQGPESTP----NLSTGGESSYCYGGEDDNQALELVIGASNGGWR 268
           T+V+IGGH+FKGILYD GP S+     N+   GESS   GG    Q L L+   S     
Sbjct: 268 TAVSIGGHIFKGILYDLGPGSSGGGGYNVVAAGESSSGGGGA---QQLNLITAGSVTVAT 327

[Close]

BLAST of CmoCh19G003110 vs. TAIR 10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 191.8 bits (486), Expect = 7.0e-49
Identity = 113/255 (44.31%), Postives = 146/255 (57.25%), Query Frame = 0


Query: 35  QQNLENYIS---FGVGPTRRNFMINASDRPDQFVPRLGF-SINCQDCGNQAKKDCSHLRC 94
           QQ L+ Y S    GVGP+ R+ +  +           G    +CQDCGNQ+KKDCSH+RC
Sbjct: 77  QQRLDLYTSAAGLGVGPSNRSLIETSGGALMMMRSGSGSGGPSCQDCGNQSKKDCSHMRC 136

Query: 95  RTCCKSRGFHCQTHVKSTWVPATKRRERQLQRH----------QIVRQQSQLDQPDQTAP 154
           RTCCKSRG  C THVKSTWVPA KRRERQ Q             + ++Q +      T+ 
Sbjct: 137 RTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGGSVPKRQRERIPARSTSM 196

Query: 155 V-------DTPGLEVANFPAEFNSSAVFRCVKVSAIDDVEEQFAYQTSVNIGGHMFKGIL 214
                   +T GLEV NFP E +SSAVFRCV+VS++DD EE++AY+T+V+IGGH+FKG+L
Sbjct: 197 AYTRIPSNNTSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVL 256

Query: 215 YDQGPESTPNLSTGGESSYCYGGEDDNQALELVIGASNGGWRSNKPTPFMESSL-YPIPI 268
           YDQGP    +   G +            +    +  +NG   S        +SL YP PI
Sbjct: 257 YDQGPAERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPI 316

[Close]

BLAST of CmoCh19G003110 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 185.3 bits (469), Expect = 6.6e-47
Identity = 134/352 (38.07%), Postives = 172/352 (48.86%), Query Frame = 0


Query: 1   MTGLFYL--------SEKQEENQEQRGREQQ-----LFL--------SKGLEIWPQQNLE 60
           M G FYL        + KQ+ +Q  +    Q     L+L        +KG EIWP Q  +
Sbjct: 1   MAGFFYLGGRDNNSNNNKQDHHQVDKDHHHQDKSNYLYLYKDEIYNNNKGFEIWPPQYFQ 60

Query: 61  ------------------NYISFGVGPTRRN------------FMINASDRPDQFVPRLG 120
                             N+ SFG+ P+  +            F + +   P  F     
Sbjct: 61  QQEHQQQQQQQQHASAPANFYSFGMVPSGSSSNNNNNRSRSLYFNVVSDHEPGGFTVTRQ 120

Query: 121 FSINCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRER-----QLQRHQ 180
             +NCQDCGNQAKKDC H+RCRTCCKSRGFHCQTHVKSTWVPA KRRER      LQ H 
Sbjct: 121 GGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHS 180

Query: 181 I----------VRQQSQLDQPDQ--------TAPVDT--------PGLEVA-NFPAEFNS 240
                      +R+ S  D  D         +A  +T         GLEV+ + P E NS
Sbjct: 181 ASSRETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNS 240

Query: 241 SAVFRCVKVSAI--DDVEEQFAYQTSVNIGGHMFKGILYDQGPESTPNLSTGGESSYCYG 268
            A+FRCV+VS+I  D+ ++ +AYQT+VNIGGH+FKGILYDQGPE   N      +S    
Sbjct: 241 PAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPEHQDNHHLNLLASTATT 300

[Close]

BLAST of CmoCh19G003110 vs. TAIR 10
Match: AT1G19790.1 (SHI-related sequence 7 )

HSP 1 Score: 175.6 bits (444), Expect = 5.2e-44
Identity = 135/350 (38.57%), Postives = 169/350 (48.29%), Query Frame = 0


Query: 1   MTGLFYLS----EKQEENQEQRGREQQ----LFL--------SKGLEIWPQQNLE----- 60
           M GLFYL      KQ+ +QE+   E +    L+L        +KG EI+P Q  +     
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSNNYLYLYKDEIYNNNKGFEIFPPQYFQQQQQQ 60

Query: 61  -------NYISFGVGPTRRNFMINASDRPDQF------------------VPRLGFSINC 120
                  N  SFG+ P+  N   N S     +                  V R G ++NC
Sbjct: 61  NHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQG-NMNC 120

Query: 121 QDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQ---------RHQI 180
           QDCGNQAKKDC H+RCRTCCKSRGF CQTHVKSTWV A KRRERQ Q         R   
Sbjct: 121 QDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDAN 180

Query: 181 VRQQSQLDQPD------------------QTAPVDTPGLEVANFPAEFNSSAVFRCVKVS 240
            R     D  D                  +     + GLE ++ P E +S AVFRC++VS
Sbjct: 181 SRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVS 240

Query: 241 AIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTP---NLSTGGESSYCYG----GEDDN 267
           +IDD +E++AYQT+V+IGGH+FKGILYDQGP S     + S  GE+S+ +         +
Sbjct: 241 SIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPS 300

[Close]

BLAST of CmoCh19G003110 vs. TAIR 10
Match: AT1G19790.2 (SHI-related sequence 7 )

HSP 1 Score: 175.6 bits (444), Expect = 5.2e-44
Identity = 135/350 (38.57%), Postives = 169/350 (48.29%), Query Frame = 0


Query: 1   MTGLFYLS----EKQEENQEQRGREQQ----LFL--------SKGLEIWPQQNLE----- 60
           M GLFYL      KQ+ +QE+   E +    L+L        +KG EI+P Q  +     
Sbjct: 1   MAGLFYLGGRDHNKQDHHQEKDHNEDKSNNYLYLYKDEIYNNNKGFEIFPPQYFQQQQQQ 60

Query: 61  -------NYISFGVGPTRRNFMINASDRPDQF------------------VPRLGFSINC 120
                  N  SFG+ P+  N   N S     +                  V R G ++NC
Sbjct: 61  NHAAAPTNLYSFGMVPSGGNINNNRSTNRSLYFNVVSDHEPVRSSTGGFTVTRQG-NMNC 120

Query: 121 QDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPATKRRERQLQ---------RHQI 180
           QDCGNQAKKDC H+RCRTCCKSRGF CQTHVKSTWV A KRRERQ Q         R   
Sbjct: 121 QDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDAN 180

Query: 181 VRQQSQLDQPD------------------QTAPVDTPGLEVANFPAEFNSSAVFRCVKVS 240
            R     D  D                  +     + GLE ++ P E +S AVFRC++VS
Sbjct: 181 SRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVS 240

Query: 241 AIDDVEEQFAYQTSVNIGGHMFKGILYDQGPESTP---NLSTGGESSYCYG----GEDDN 267
           +IDD +E++AYQT+V+IGGH+FKGILYDQGP S     + S  GE+S+ +         +
Sbjct: 241 SIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPS 300

The following BLAST results are available for this feature:

BLAST of CmoCh19G003110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
K4B6C9	5.4e-54	43.84	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]
Q9SD40	4.3e-51	45.99	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	9.9e-48	44.31	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
Q9LQZ5	9.2e-46	38.07	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9FXH7	7.3e-43	38.57	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1	[more]

BLAST of CmoCh19G003110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH62	6.2e-154	100.00	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita moschata OX=3662 GN=LOC11146402...	[more]
A0A6J1HUZ8	1.6e-141	90.00	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467062 ...	[more]
A0A6J1FN62	1.4e-100	68.11	protein SHI RELATED SEQUENCE 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0K1X2	2.2e-98	65.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G051450 PE=3 SV=1	[more]
A0A6J1J314	3.7e-98	67.11	protein SHI RELATED SEQUENCE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480884 ...	[more]

BLAST of CmoCh19G003110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51060.1	3.0e-52	45.99	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	7.0e-49	44.31	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	6.6e-47	38.07	SHI-related sequence 5	[more]
AT1G19790.1	5.2e-44	38.57	SHI-related sequence 7	[more]
AT1G19790.2	5.2e-44	38.57	SHI-related sequence 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 71..199 e-value: 3.1E-52 score: 177.1
None	No IPR available	PANTHER	PTHR31604:SF4	PROTEIN SHORT INTERNODES	coord: 13..265
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 73..115 e-value: 7.9E-27 score: 90.9
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 151..198 e-value: 6.4E-26 score: 88.0
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 13..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G003110.1	CmoCh19G003110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding