CmoCh19G001860 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G001860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase RNF4-like
Location	Cmo_Chr19: 1206319 .. 1211570 (+)
RNA-Seq Expression	CmoCh19G001860
Synteny	CmoCh19G001860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGATTTTCATTTCCAATCCCCAGCCCTTTCTCCATTTCTCCCTTTATAATGGCGATTTTCCCCTCTCTTCGCCTTCCACCTCTCAACCCTTCCAACCCTAATTACAAGTATCACAAATTCGCGAGCTAATCCTCCACTCCATACACTTCTCATCTAATCTATTCTATCTATCGTAAAATTTCAAGATATTTGCTGCCTGTGTATCGCTTCATCAACCGGTTATTTCAGGTACTCCATCTCCAGATTAGAAGAATTTTCTTAATTGTGTATTGTATCTTTGGTTTTTTTTTTTTTTATAAATAAATTGTTTTTGTGAATGCTTTGGCCGATGTTCGTTTGAAGAATGGATGTTTTGGTGAGGTTCGTTGGAAGAATTTTTGGGTTGTGTAGTCGGGGCAAAAGATCGGATAGAATATGGGTTGTTTGGATAGGGATTTTGATGATCTGTGTGAATTTTGTGGTTTATTGTTAGTTGATTAATTCGAGGTTGGATGTAATTGAATCTGTGGTGTAACTAATTTGGAGATTTTCTGACACATTAATAAATGTTTAGGGGGAGAGGGTATTGGTCGATTATAAGAGGTGGGTTTTGTGTATAATGTGGGGTTTTCTCTTAAATCTAAAGAAGTGTTTGTTGATTAATGAAGTTTTGTTTTGTTTTTATGAGTTACAAGGATTTTGTTTCTTATATAAGTTTTTTATTATCGTGCCATTTCAGTGAATGATAACTGAAGTTTCGTTTTCGTATCCAAGCTTCTCAGCTTGTATTTGAATGGTGGTGGTGGTTGTTGTGTTGGCTTTGTTGGAAGCTATCAATTTCCTTCTGAAATTTTACAGTGCATGTATGGCAGGTTGTTGAGGAGCTTTGAACTATAGATGAGTACTCAGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACATCTCAATTTGGATTTCCGGAAGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAAGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGTATGATTCTTCTATCCATATAATGTTCCTGTTCTATTGATTCTGATCTGTTTTTCATGGAATCCATCGATTATCTGTCAGGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGGTATGTTTATTTCAGCTTGTGGAGGACTATAGCTAGGTTGATTTTTTTTCGTATTACTTTTCGTCCTTTGGATCTTTATTGAGATTTCTTCTTAAGCTTAGCATTCATTAGTTAGACCCATTCTCTCACTGATTTTTGGACTACCTTGTTCTCCTGTCTAGAGCATGCTAGCAAGAGCAATGAATTGAAGATATATTTTTGCTCGATCTATACATCTTCCCAATGTCCATCTAAGGGTCGGAGCTAATGATCATGATAGTTTTTAGCTTGGAGATTCATAACCACGGTCTACAATCGTTTGTTTAGAATTTGCTATTAGCAAACCACCATAATTCTTCCATTGCATGCTATTTTGCAATGACATGACTTTATGCCACACGGCACCACTTTCAGTGGGTACCTTCCTAGCGGTTTAGTTAAAAAGTCGTCGTCTTTAGCTAGCTTCTCTATCAAATCATTCAACTTCATCGTCATGACGTGAGCTAACCATCCATAAAAAAATAGATTCTTCCACCAACCATTCACTGAAAAGAAAGAAGACCCTAGTTGAACTTATTTTGGAGGTAATATGTTACTAGTATTCTCTCCAATCTTGAGGACATATCCCTTCCATAGCTCGCAGGAATGTGTAGCCATCATAGCTCATGAATGGGGTTAAACCTTTTCATTGCTGCTTAAAACGGAGGCCTCGAATTCTTTGAGATCTGTCATTAGAAGCTTTATGAAATCAGTTCTTCCTTGATTACCAGCTCGGCTATAAGTTCCGATCATTCCGTGGGAAGGATCAGACCACATAACTGGCTGGTTAGCTATTAGGACTTGTTTGGAATGCAAGGGGCGTCAGCAATGGCTGCTTCCAAGTTTCCAACTGATATGGACCTTGTGGGCAAGTAACTCTAGATGTTTATTGTCGTTTGGACTGTGTTCCACTAGAACCTCTTGTCCATTTGTTGTGAAGCTTGCATCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCGAATCAACAAACTGTAAATTCTGATTTATTAATCAATTTGGAAGGCAGCAACAGCTCTATGGTACTGGGACAATTTATATCTTCATTACTCTTATTTTTGTGCAAATTTTTCTCGTCGTGTTACTCGTTAGGTATAGTGTATATTATATGATTGTCTTTATGATACCACCGTATAAGCACACGTCGAATTGAGGAATTTTCATGGCATGAGATAAGGACTTAGGAAGACAGAAAATGGTGCACTTCGTATTTGGCAAAACTCAGTGCATAGGCATAGCAAATACTTTTAGACATTCCCAGTGCATCTAACTAGTTGGATTATATCTAGATCTTGAGATATTGAGATAACATATTTGTTCCAATACAATATTCAATTTAATGAGAATTTGAATATTGAATAACAAATATGCAGAATGTAACGACCCAGGCCCACTGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAGGTTTTAAAACGCGTCTGCTAGGAGAAGGTTTCCACACCCTTATAAGTGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACACCACAATCCACCCCCCTTCGAGGCCCAGCGTCCTCGCTGGCACTCCTTCCTTCCTCCAATCGATGTGGGACCACCCCCAAATCCACCTCCCTTTGGGCTCAGCGTCGTTACTGGCACACCGCCTCGTGTTTGCCTCCCCTTCGGGGAACAACGAGAAGGCTGGCACATCGTCTGGTGTCTAGCTTTGATACCATTTGTAACGACCCAGGCCCACCGCTTGTAGATATTGTCCTCTTTGGGCCCTTTCGGACTTCCCCTCAAAGCTTTAAAACGCATCTGCTAGGGGAAGGTTTCCACGGTGGTTTGTTCTCCTCCCCAACCAATATGGGACATCACATTTATCCATGAGTTTCTACAAGAGCTCTCTCTCTCATGTTCCTTGTGTTTGGTAACTTTTCTCCCCTTGGGAAAGGTTAAGTTAGTTTGTTTATGGTTCCTTTTGAATAATCTCTCTCTCTCTCGCACTTTGTTTGGATGATGCTCTATCCTTCGGTTGATTTCTCTTAAAAATTAGGGTATGTTCATAGTTCGAACCGATATTTGCTTATCGCTTAACCGAGAACCGAACCATACATTTTGGTTTGATTTCATTTGAAAAAAAGTGAATTATAGATGGGTTTGAGCAAAATAATTGAAAGTTAAACCAAAGAGTCCCTTCATTAGATCTAATTATCCCTAGGTGTAATGTCGTCCTTGTGACTAAACTCGTGGTGGTCTTTATATGTAGTCGGCTCCAATAATGCAATTCCAGGAGGAGTCGGTAGTAGCTTCTTATTAGCTGTTAGTCTTAAAATACGAGTGAAGTGTTGAAAATAGGATGATGATGCGATTTCTGTGGTTTTTGCAGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGTCCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTATATGTAAGTTCCTTAATTGCTTAGCCACTCTCTTGTTTTCATGGTTCAAAAAAGTTGCATTTGCCTCGTTTTTAATATGTTTTCTTTGTTATTGGCCGAGCCCCGATGTGAAATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGATACCTCTCTCTAGCAGACACGTTTTAAAAAGCTTGAGGGAAATCCCAAAGAGGACAATATCTACTAGCAGTGGGCTTGGGTTTTACAAATGGTATCAAAGCCAGACACCGGGCGATGTGCCAGCGAGGAGGCAAAGGTGGATGAACATGAGGCGGTGTGCTAGCAAGGGCGCTTGAGGGGGGGGGGTGGATTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGAAACATTATTGATAAGGGTGTGGAAACCTCTTCCTAGCATACACGTTTTAAAAACTTTGAGGGAAAGCCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGTTTTACAAATGGTATCAAAGCCAGACACCGGGCGATGTGCCAACAAGGAGGCTAAGCCCTGAAGGGGGGTGAACATGAGGCGGTGTGCTAGCAAGGACGCTGGACCCCGAAGGAGGGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGGAGAGCGAAACATTATTTATAAGGGTGTAGAAACCTCCCCCTAGCAAACGCGTTTTAAAAACCTTGAGAGGAAGCTCAAAAGGAAAAGCCCAAAGAGAACAATATTTGCTAGTGATGGGCTTGAAACGGTTACACCTGAGATTTCTTTCGTAACTAACTTGGTCTCGTTTTTTATAAAATGGACAGGTGGGTGGATTTTGATTTTGAAGACTTCATTCAAAGGGAAATGGTTGGAGTTTTCTTGTATGTAAGAGAAGCTAATTTTTAGGTGGAAATTTGTGGTGCATTCTTCAGCTGATTGATGTGATGGATCGGAGGAGGAGGAGGAGGAGGTAGCAAGACCATTTCTTTTGTTGTTGTTACGTTGGTGTAAACAAACTCACAATCAAATCCAACCATAATGCAATGAGATTACATAAAATCCATCTACAAAGTTACCTTTGTCGGTCTACATCAACATCTCTCTCTCTCTCTCTGTGTTCTTCATATGAACTTTATATGTCTCATTTCATGTTCTTATATATTTTTGCATCTGTTTGGGAGCCTTCTTGCAGTGCCCATGATGCTTTTTTTCTTTTTTCTTTTTTTGGGTAAGGACTGGTTGTGTGAAGTTGTCTTCTCTATTCATTTTTGGACATTTTTTAAAAAATTTAAAGAATAATTTTAAGATCTTTAT

mRNA sequence

TCGATTTTCATTTCCAATCCCCAGCCCTTTCTCCATTTCTCCCTTTATAATGGCGATTTTCCCCTCTCTTCGCCTTCCACCTCTCAACCCTTCCAACCCTAATTACAAGTATCACAAATTCGCGAGCTAATCCTCCACTCCATACACTTCTCATCTAATCTATTCTATCTATCGTAAAATTTCAAGATATTTGCTGCCTGTGTATCGCTTCATCAACCGGTTATTTCAGGTTGTTGAGGAGCTTTGAACTATAGATGAGTACTCAGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACATCTCAATTTGGATTTCCGGAAGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAAGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCGAATCAACAAACTGTAAATTCTGATTTATTAATCAATTTGGAAGGCAGCAACAGCTCTATGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGTCCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTATATGTGGGTGGATTTTGATTTTGAAGACTTCATTCAAAGGGAAATGGTTGGAGTTTTCTTGTATGTAAGAGAAGCTAATTTTTAGGTGGAAATTTGTGGTGCATTCTTCAGCTGATTGATGTGATGGATCGGAGGAGGAGGAGGAGGAGGTAGCAAGACCATTTCTTTTGTTGTTGTTACGTTGGTGTAAACAAACTCACAATCAAATCCAACCATAATGCAATGAGATTACATAAAATCCATCTACAAAGTTACCTTTGTCGGTCTACATCAACATCTCTCTCTCTCTCTCTGTGTTCTTCATATGAACTTTATATGTCTCATTTCATGTTCTTATATATTTTTGCATCTGTTTGGGAGCCTTCTTGCAGTGCCCATGATGCTTTTTTTCTTTTTTCTTTTTTTGGGTAAGGACTGGTTGTGTGAAGTTGTCTTCTCTATTCATTTTTGGACATTTTTTAAAAAATTTAAAGAATAATTTTAAGATCTTTAT

Coding sequence (CDS)

ATGAGTACTCAGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACATCTCAATTTGGATTTCCGGAAGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAAGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCGAATCAACAAACTGTAAATTCTGATTTATTAATCAATTTGGAAGGCAGCAACAGCTCTATGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGTCCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGA

Protein sequence

MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE

Homology

[Close]

BLAST of CmoCh19G001860 vs. ExPASy Swiss-Prot
Match: Q9CQ29 (RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 140 APPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRV 199
           A P +  F C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 11  ASPPDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]

BLAST of CmoCh19G001860 vs. ExPASy Swiss-Prot
Match: Q9QZS2 (E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-06
Identity = 43/165 (26.06%), Postives = 70/165 (42.42%), Query Frame = 0


Query: 52  QSVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARK--------NIVDVDAEERSRAS 111
           +S++P ++D+   D  VI        E + + RRN R+         +V  D EE SR  
Sbjct: 56  ESLEPVVVDLTHNDSVVI-------VEERRRPRRNGRRLRQDHADSCVVSSDDEELSR-- 115

Query: 112 NNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKEKAAPPK-EPNFSCPICMGPLVE---- 171
                            + D+ +      S+  + A  P+     SCPICM    E    
Sbjct: 116 -----------------DKDVYVTTHTPRSTKDDGATGPRPSGTVSCPICMDGYSEIVQN 175

Query: 172 ---ETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFL 201
                ST CGH+FC  C++ ++   + CPTCRK++  K    +++
Sbjct: 176 GRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of CmoCh19G001860 vs. ExPASy Swiss-Prot
Match: E7FDW2 (E3 ubiquitin-protein ligase PDZRN3-B OS=Danio rerio OX=7955 GN=pdzrn3b PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-05
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 144 EPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRV 199
           +P+F C +C   L +  +T CGH+FC  C+   +  QS CP   +R++ KEL  V
Sbjct: 13  DPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRISTKELNHV 67

[Close]

BLAST of CmoCh19G001860 vs. ExPASy Swiss-Prot
Match: Q32NQ8 (RING finger protein 10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 26/62 (41.94%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 148 SCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ----SKCPTCRKRVTAKELIRVFLPGT 206
           SCPIC+ P V    TRCGHIFC  CI   +++     S+CP C   +  K+L  V    T
Sbjct: 205 SCPICLYPPVAAKITRCGHIFCWPCILHYLSLSEKDWSRCPICYSSIIKKDLKSVVATET 264

[Close]

BLAST of CmoCh19G001860 vs. ExPASy Swiss-Prot
Match: Q9FF61 (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana OX=3702 GN=At5g05130 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-05
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 146 NFSCPICMGPLVEETSTRCGHIFCKACI-KTAIAVQSKCPTCRKRVTAKEL 196
           +F CPIC+ P      TRC HIFC+ACI +T    +  CP CR  +T  +L
Sbjct: 632 DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDL 682

[Close]

BLAST of CmoCh19G001860 vs. ExPASy TrEMBL
Match: A0A6J1HFU4 (E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita moschata OX=3662 GN=LOC111463920 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.2e-108
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ
Sbjct: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]

BLAST of CmoCh19G001860 vs. ExPASy TrEMBL
Match: A0A6J1HQI7 (E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita maxima OX=3661 GN=LOC111466888 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MST+AMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGF EAQVNQQQSVQPAMID
Sbjct: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLE SNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ
Sbjct: 121 NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]

BLAST of CmoCh19G001860 vs. ExPASy TrEMBL
Match: A0A1S3CCB4 (E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.9e-95
Identity = 184/206 (89.32%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLE SNSSMK K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]

BLAST of CmoCh19G001860 vs. ExPASy TrEMBL
Match: A0A6J1E010 (E3 ubiquitin-protein ligase RNF4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024653 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.1e-93
Identity = 183/206 (88.83%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRG TARGYHRRKSLDLDLNSMPP+ENRDQGE SQ G  EA  NQQQ +QP MID
Sbjct: 1   MSTQAMRGTTARGYHRRKSLDLDLNSMPPSENRDQGEPSQLGLQEAHSNQQQPLQPTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSR SNN RSKRRR+V NQ+TV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRVSNNIRSKRRREVSNQRTV 120

Query: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NS+LLINLE SNSS+KEK  PPKEP FSCPICMGPLVEETSTRCGHIFCKACIK AIAVQ
Sbjct: 121 NSNLLINLEASNSSLKEKPVPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIKAAIAVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]

BLAST of CmoCh19G001860 vs. ExPASy TrEMBL
Match: A0A1S3CBW2 (E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.8e-93
Identity = 183/206 (88.83%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA ERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA-ERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLE SNSSMK K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 205

[Close]

BLAST of CmoCh19G001860 vs. TAIR 10
Match: AT5G48655.2 (RING/U-box superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-39
Identity = 103/211 (48.82%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++        +   Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERSRASNNNRSKRRRDVPNQQ 120
           ++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR +P+ +
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRR-IPSSE 120

Query: 121 TV------NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKAC 180
           +V      + +  +N+    S  K  A PP+EP F+CPICM P  EE ST+CGHIFCK C
Sbjct: 121 SVIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 180

Query: 181 IKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
           IK AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 IKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]

BLAST of CmoCh19G001860 vs. TAIR 10
Match: AT5G48655.1 (RING/U-box superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-39
Identity = 103/211 (48.82%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++        +   Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERSRASNNNRSKRRRDVPNQQ 120
           ++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR +P+ +
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRR-IPSSE 120

Query: 121 TV------NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKAC 180
           +V      + +  +N+    S  K  A PP+EP F+CPICM P  EE ST+CGHIFCK C
Sbjct: 121 SVIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 180

Query: 181 IKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
           IK AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 IKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]

BLAST of CmoCh19G001860 vs. TAIR 10
Match: AT5G48655.3 (RING/U-box superfamily protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-39
Identity = 103/211 (48.82%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++        +   Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERSRASNNNRSKRRRDVPNQQ 120
           ++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR +P+ +
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRR-IPSSE 120

Query: 121 TV------NSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKAC 180
           +V      + +  +N+    S  K  A PP+EP F+CPICM P  EE ST+CGHIFCK C
Sbjct: 121 SVIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 180

Query: 181 IKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
           IK AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 IKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]

BLAST of CmoCh19G001860 vs. TAIR 10
Match: AT3G07200.1 (RING/U-box superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-31
Identity = 90/178 (50.56%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 30  TENRDQGETSQFGFPEAQVNQQQSVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNA 89
           T+N  QG+  Q    +A    Q    P  I++ AI  DDDV+ES+A AFA+AKNKS R+A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKS-RSA 78

Query: 90  RKNIVDVDAEERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKEKA-APP-KEP 149
           R+    VD E    ++  NRS RRR   +Q +V+S  L      N   K KA APP +EP
Sbjct: 79  RRGSQVVDVE----SAGANRSTRRRS--DQTSVDSVEL------NKPRKSKAVAPPVEEP 138

Query: 150 NFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
            FSCPIC+ P  +E ST+CGHIFCK CIK A+++Q+KCPTCRK++T K+LIRVFLP T
Sbjct: 139 KFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTT 181

[Close]

BLAST of CmoCh19G001860 vs. TAIR 10
Match: AT3G07200.2 (RING/U-box superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-31
Identity = 90/178 (50.56%), Postives = 116/178 (65.17%), Query Frame = 0


Query: 30  TENRDQGETSQFGFPEAQVNQQQSVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNA 89
           T+N  QG+  Q    +A    Q    P  I++ AI  DDDV+ES+A AFA+AKNKS R+A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKS-RSA 78

Query: 90  RKNIVDVDAEERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKEKA-APP-KEP 149
           R+    VD E    ++  NRS RRR   +Q +V+S  L      N   K KA APP +EP
Sbjct: 79  RRGSQVVDVE----SAGANRSTRRRS--DQTSVDSVEL------NKPRKSKAVAPPVEEP 138

Query: 150 NFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
            FSCPIC+ P  +E ST+CGHIFCK CIK A+++Q+KCPTCRK++T K+LIRVFLP T
Sbjct: 139 KFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTT 181

The following BLAST results are available for this feature:

BLAST of CmoCh19G001860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CQ29	1.3e-07	44.07	RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1	[more]
Q9QZS2	2.5e-06	26.06	E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1	[more]
E7FDW2	1.6e-05	38.18	E3 ubiquitin-protein ligase PDZRN3-B OS=Danio rerio OX=7955 GN=pdzrn3b PE=1 SV=1	[more]
Q32NQ8	2.7e-05	41.94	RING finger protein 10 OS=Xenopus laevis OX=8355 GN=rnf10 PE=2 SV=1	[more]
Q9FF61	2.7e-05	45.10	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati...	[more]

BLAST of CmoCh19G001860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFU4	5.2e-108	100.00	E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1HQI7	6.4e-106	98.54	E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita maxima OX=3661 GN=LOC11146688...	[more]
A0A1S3CCB4	3.9e-95	89.32	E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1E010	2.1e-93	88.83	E3 ubiquitin-protein ligase RNF4 isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3CBW2	2.8e-93	88.83	E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CmoCh19G001860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48655.2	1.7e-39	48.82	RING/U-box superfamily protein	[more]
AT5G48655.1	1.7e-39	48.82	RING/U-box superfamily protein	[more]
AT5G48655.3	1.7e-39	48.82	RING/U-box superfamily protein	[more]
AT3G07200.1	1.7e-31	50.56	RING/U-box superfamily protein	[more]
AT3G07200.2	1.7e-31	50.56	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 149..186 e-value: 6.9E-5 score: 32.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 149..187 score: 12.533537
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 149..186 e-value: 8.6E-10 score: 38.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..124
None	No IPR available	PANTHER	PTHR47094	ELFLESS, ISOFORM B	coord: 1..204
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 144..193
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 126..201 e-value: 6.5E-18 score: 66.6
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 164..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G001860.1	CmoCh19G001860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding