CmoCh18G013420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G013420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	splicing factor-related
Location	Cmo_Chr18: 12704567 .. 12712884 (+)
RNA-Seq Expression	CmoCh18G013420
Synteny	CmoCh18G013420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATTAAACTGCGAAATCTCGAAGGCCTTCTTTCAGAGGAAGCAGCTTCAATACAAGCTCTGGCGCGAAGCTGCGCTTGCGCCTGAATCTGCACCGGCAACCCAGGGCTGAAGCTGACAGTGAGAGAGACCAGATTGGTGACTTAACATGTCGTCTACGCTACTAGAGGTGACCCGGTCTTCGCACGAGGAGGTGGAGCGACTTGAGCGGCTTGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCCGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGACACCATCGTGTCCACCACCGACAAGCTCGTACTTTCCTCTCTATGCTTAATATTTTCTGTGATTTCTGTCTGCTGGCGTTGAACATTTGAGGACGTAATGGGGCATGAACGCTTTAGGTTTTAGGCCCTCTTTGGTGGGATTTTTTGTTTTCTTGTAGGGTGGGCGTCTGCATTTGAATTTTAAAATTTCCAATGACAAGCAAGTTGAAGAATTTCATTTCACGGCATTTGGGAAGAGATTTATTTGCTTCTATTAGCATACTCTACTGTGACTGCGAAAGTTAATGTAGAAATTTTCATGTCGCTTGAAAATAATTAATTCTCTCTTCACCATAATTTTGGATTTAAAATGGAATGGAAGGGGAACCATACAAATTAGGATATGCTCCAATTAGGAAGCTTGGTGATGGAAGATTGGGCAGTTTTCTTTGAGATGCGAAAAATGAGTTCTGCAAAATTCATGTCTTGAATAAATTTTTTAATAAGCTAGATGGGTTATTTTGTTTCATTTGTGCTAGTCTCCTTATATTATCGTTGCTTTGACGGGCATGCTTTTCTTTAATCTGGACTGAACTCTTTTCTACCCCCTCTCCGCCATTATTGCTTTTGTGTGCAGGTTGAGATTTATGAAGATAAGGATAATGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTTAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGGTCAGTAGCTATATTTCATTATCTTAGCATCTATCTGTTTCAGAATTTATTTAAATCTTTCACTTGAATGTGAGCTAGTGAATCTGGAGAAAAGGGATGCAGTTCAAGTGTAGCATTCTATTATTTATTTATTTTAATAAGAGGTAATGTCATTCATGAAATGTAAAAAGAATGTAGATGGGTAGCCATAGAAGGCATTTTTTCCCCAATAATTGTCCAAAGAAATTCTTTGCCTAAGAAAGCCCTACTATTTCTTTCAGGCCATATAGGCAACAAAAATGAAGTGACCCACAGAATTTTGACTTCATTTTTAAATGGCTGCGCATCCAATATGAGTGCAGGGTTTCTTTTGAGGGCGTTTGGGAGAGGATTCACCTAATTGAAGTTGCTGAAGATAGTTTTCTAGAAATTACAGGCATGAGGGCTAGTGAGGAGATGTCATTGAGTTTTTTGGCTTGCTTAACATATGTAGCACAAATTTAGGGAGAGGCAAAACAATCAATACTGCTTTGACTATTGATACAGCCGAGCAAGAGTTACCAAAGAAAAACTGTGTGCGTGCATGGGTTTTTTCTAGTGCAAAACTGAGAATGTTTGCTTCAAAGAACATGATGGGAACCGTGTATCTAGAAGTTCCTTAGAACCTTCTCAATGATGTTTACCAACTTTGGCCTTTTGAAGAGGGACATGGAGTAAGTGGAGGTTCGGAAAGATGGCTTGAGTGAGAGCGGGTCTACTGTCAACCTGCATTAAAGAGGGGTGTTGTTTTGCCTTTCAACCTTGCTAGTATCAAGTTTTGAAAGGAGACTTTGTGAGGTAAGAGCTAGTCTACTGTCAGCCTGCCTTAAAGAGGGGTGTTGTTTTGCCTTTCAAGCTTGCAAGTATCAAGTTTCAAAAGGAGGCCTTGTGAGGGTTGTCATGAGAGGCAAGCCAAGGCGGGAAGAGGGCCATTCCTCTACGCTACTGCTAATGTAGGTAGCAATTGATTTTAGGCTGTCTTTTGGAAAATTTATGTTAAGGAGTGTGGTTAAGGATAGGTTAGAGTTCAGACTCGATGCTTCCTTAATTTTTTTGGATAATGTTGAAAGGTTTTGGTTTTTTTTTATTCAGCTGAAGAGAAGCATATCATCAATGTAGGAAGTGATAAATGAAACCTTCAACATACACTGCTTGAAAACCTCAAGAGAATCAGCCGTAATATTAAAAAAGAAAAAGAAAAAAAAAGAAAAAGAAAGGAGAACCTTACCTGTACCTCTAGAGGCAAAGATTTTTCCTCTTTGCTTGACTGGTAGTTATAGAGAGGTTTGTATTTAAGATGCTTGTGAAAATTCTATTCCTACATTTCTTCCCAAAACCTTTTGAAGTTAGGTCTAGCTTGGACGACTAACTGGAAAGTTCATTGATATTCCTATTCTTGCTCAACTGTGGAGGCACGTTTCTTAGAAAACTTAGTAAATACAATACTCCAGTGAATGAGGAAAATATAATTTTGTGTTCACTAGTAAATCTGAATTATTATTTCAAAGTTATCAGTTGCTTTGTATCAAGTTCAAATTACTTTGTGCGCAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGGGTTGTTGATGTTAACGAGGAGGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGTCTCTCTGTTTCTTCTCTTACCTTGAATTTGCATAGAATTGCTTGACTTCAGTTCTTTCATGGTGAAACCTGTATTTTCGTGAAATTGATCTACTGCCTCATTGCAGGCCATGTATGGAAACATGCTCCAAGTCAAATCATGAAAACAATCCTCATGCTTTCATTTTCATGTTTTTATGGTGTCATAATTAGATTTTGAGTATGACACAATGCATTCTTATCAAAGAAGAGCCTTTTCTATTGCCTAGTGATTGGGAGCTTAAGTCTTTATTTTCCCTAATTTTTTGTATTAATGCAATGTACAAATTTGCCTCATCTGGCAAAGGTAAATTCACCCATGGGAGTTCACTTTGGTCATAATAACTAAAAGTTGTTTTTGATGTTATTAGGTCTTATTCTTTTGTATTGGGGTCTTTTCTTGTAGAATAGTTGGTTGGGCTCCTTTCTTTGGGCTGCCACTTTTTGTTGGCCTCCTCTTTTGCTGGTTCTCGTGTTTGTCTGGCATTTTCTTGGCTTCCTTGCATTTCTTCATTTTAATGAAAGGTTGTTTTTGGATTACAAAAAACTGTTAGTGGTAATAATAAGATCTCATAATTTATTTCTTAGCCTTAAACCGCTTATCTTTTTCTAAGAGAATAAATTTCAGCCTTTGAGATTAAGCAATGCTTAGTTATGGGCTTGTGTTAACTAGTGGGGGTCATCTTGAGAGAGCTCCCTTTTGGTGGGTTAATTGTTGATTCAAATCTTATTTTGGTTCCTAAAGTTACATACTTCATTGATTTTTATTATTTTACTTTTAAATGTTTATCTCTTGTTCTTGAACTTCAAGTAAATATCTACTTTGTTCCTTGCAGCGAAATTTTATATTACAATTTAATAGAAATTTTATATTACAATTTAATAGAAATTTTATATGCACTATATGAAAATTTTGTTCTCAGGTACACATAAGTTTGATATCCAATTTGAAAAATAGCTGATGTATGGTTTATGTTAAATATAATATGAAAATGTAAAAAATGTGTGAACAAGAATCAAATGAGTATTTATGAATTTTAAGGACTAAAAAGTTGTGAGGACCAAAACAATGTAAATGTGAAAGTTCAAGGTTGGTAATAGGATTTCCAATATTGTTTTGTTACATGCATGAATGAAATTGGAAATTCTAACTCCCTATATGTATAAGGTGCATGTGTATCAATATTTCCCGTTTCATTTATTGACTTGTTTATGTTTTAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTCTACAACCAGTATATTAATTCGAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTTTCACAGCCCCAGAAAATCTCTCGCAAACTAAAGAATTCAAGGTAAGCAGATCAAAGTTCTTTCTCAAATATGATAGTTCCGTTGATTGATGATTTGTTTTAAAGTAAATAAATGGTGTTTTATTTTGAGTTCTAATATCTACTTTATACAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCACTTACTTTTTCCAGCGTACAGAGCCCTTACAAGATCTTGATCGTATATTCTCAAAGGTTATTATATGATAGTGTTTTCTTTCCCAATTTTAACATTCAATTATCAATTATGCATTATGCTGGCTTACTTCTCGGAACCGGATCTTAATTGGCTTTTTTCATTATGGTTTTCTGCATGCAACAATTATAATCATTTGAAAGCGTGCTGTTTGCAAGCTATCCATTGTATGCATGTTTGCATAGAACTTTAGGCTTGCATCTTTCTAAAGACGATTTTGATTATGTGAGGGTCTTTTGATAGGTTGAATCTGAATTTGAAGAGCAATGGATTACCGGTACAATTGAAGGATGGGAGAACACTGTGGAAGATAATGGCCATGATCCTGCCCAGCTTAGTCTTATTGATCTTGACTATTATAGCTCGGTAGAAGAGCTGGTGGAGCTAGGTCCTGAGAGATTGAAGGAGGTAAGAAGTGCTATCTTATGCCATATTATATATGTTGTGGAAGTTCTAAATATGGCATTACTGCACTACGGCTTTTATTATTTATTTTTTTTTTTATTTTTTTTATAAGAAACAATGAGGAAAAAATTCCACCAAAAGAACAGGAAATATCTTCAGGGCCGGGGGTGGACGGCTTTCTTTTGCTTTGTTCTTCACTCTTATATCACTGTGTGGCAGGGGTTGGCAGCATTGGGGCTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGGTGGTATTTTACTGCCTTTGTGCCCAAAATAGGACGTCAATGTTGTGAACCTACAATATAAGCATACTGGCTTGGTTCACGTGTGATAAATAATTTTAACGAGGAATTAATTTCTTATGTCCTGCATTGTGCTATCAGCACAACTGCTTGTCGAGCCATTTTCTCTGTGCTTATGTTTTTAATAAAATTTTGTTTCTTGTAAAAAAGAAACAGCGCATTGTTGAAAGTTTATGGTGGTAGCACATACACATCGTATGATGTTCGTAGAATAGCAAAAACCTTTTTCTTTCCCGTCTTTTAGATAGTTTGTGTGCCTTCTCTTTTCATTTCTTTAATGGAAAGTTTCACTTATCGATTAAAAAAGAATGGACAGCAAAGTATGATTTTAAGGCTAGATTGCAATAGGATGACCAGCGTATAGTTTAAACCATGAATTTGTTATGGTTATGTGTCCTTCCATTACCAAGGAAGATTGGGTCTTGTTTTAGTGCGGTCATCAATATGCTTGGATTTTCCAATATATTACTGGCTGATCTAGTATTTTTGTTTCTGAAATAAACCTATCCCCCTTTATGCTAGTTATGTTCTATGTGATAAGAATATTTATCTCATTATCCTCGAGCATTGACTGGTAGGAAACATCAGACAGTTCTGTTTTCTGAGATGTCATATAATCTTACCCCACTTTTTTTTTTTTCAATGCTTGGAATCTTATTTTTTTAATTTTACAGTTCATTTGACACCCCTATTCTTTGCAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTCGCAAAACCGTCCCGGCAACCAGTTCAGAATGGGGCAGCTGCAGCTTCACTACACAATGAAAATTTGAAACAAGTTGCTCTGATGGAAGCAAAAATTGAAAAAATGTGCGATCTTCTGGATGAGGTCAGCTTTTGAGAATGATCAAAATGTCCCTTTGTTTACTTGTAATTTCCGTAATGTATATATTCCAAAAGTAATAATTTTGGGATCATTTGTTTTATTTGTGGCCACTTTCAGACTATCGACAGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGTGAGGAAACAGTAGTTTGTTTTTGGTCCTTTCAAGACCCCCCCTTGTTTCTCTCCCTTAAGCTATTTTGGGATAAATTTTTGGAATACATTATTTATATCTAAGATGGTTACCCTGCATGTCATCCACAGAAGCATTGTCTGCCTGGAGAAGTTTGCGTTTTATAGTGTCATGGATATTTGTATCAGAAATTTATTTAAAAGTTTGCACATATGCATCCCAATCTGGCTTTATGGTCTACTGATTTCAAATACTAGTTAGAACCTTATCAAGGTCACCAAATTTACTTCTTGATGGTGAATGGCCTGCACTAATAGCGATGGTTTATTATGTGGGTTCCAGATCTTTTGTATCTATGCAAGTTTGTTAATGCCCGGTTGGCAAGAAACTGAGCTTTTAAGAAACCGTGCATCATTTACTTAAATCTTTTTAATATTTAATAGCCTTCTGATGCGTCAATTCTGGCAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAGCAAATTTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGTAAATCATTACCTCCACGAAAGCCCAAGCCCTGTAGCATGGGAAAGGAAATATAGCATATTAGGTGTTTAATAGTTATGTGCCCACTTACAAAGTCCGAAAGCGAATTTCTCTTGAGAAAGCACAATTTTCATTTCAGGGAGCGCATCAATTGAACTTAATTCTTCTCTGGATTTGACTGTATTTGCTGGTATCTAGTTTGTTTGTCTTTTCAAGCCAATATGTTGATGTATGTTTGAAAGTGAAACACGATATGATATTGCTTAGGAGATAACTTCCTACAGCGAAGTCTCAAGCCATTACATTGTGGAGATCATAGTTGCACTTGTTATTTCCATAAACTATATTGTTCAACAGCATGCTGTGGTTGCTTTTGTTTTCAACTTTTTGAAGTTCACGTTGAAAGATTTGCTTGAGAATGTGATAAATTTGTGCAACAGGAATTCAAATGTGAGATATGCGGGAACTATAGTTATTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTCAATGAAATTACATCAATTGAGGTAGGTCTTTGCTACTACTTTGACCTCCCTATCTGTGAGCGTTTATTATTATTATTATTATTATTATTATTTTGGTAAGGATCTGCACTTATCATTGATAAATTAAAATGTACTGTAAAGGAAACCCAACCAAGGAGGGACTTACAAATATGTGGCCAATTGTTATTACTAACGAAAGAATCTAACTGTAATGAGTAGAAAGGGTAGACAAGAGGAGCTGATATTTTATTTTTTTACAATTTATGGACATTTTGGGCTCGTTATTCACTTTTGGGATGTTACAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAGCAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAAGAATCATGGACTTCTTTCTTATCGGTAACTTCCATCTGAATTTCTCTCCACTCAAAACTGACTCCTGAGTTCTATGTCAAACCACCTGTGGAAGAAAGGAAGATATATCCTTCTCTTGCTTCCTTATTGTATGGTTTAGTAAATGGGTTATTTCCAAATCTTTCTTTTTTAGGTTCCTATTATGGATAGATGGTCGTTGAGGTTTGGGAGAAGCACTTGGTCATGTTGATTGAATGGAGATTATGAAATGCTCTAGCCAATTTTACTCGTAGTCAGATTGTAATGCATTTTTGGAAGCTAAATTTGAGAAATCACGTTCTATTCTGATTTAGAAATGAGCTGAGATTATTTTTCTGTATTATTTGAAGTTCCTTTTATGAATTCGACATGAATGTCGCCATCTATCTTTGGTTATTTCAATTACATAGAAAATGAGGAAGTGCCGAAAACGTTGCTTTCATCAGCTTTCCTCGCTCCTCGTTTGTTTCTGAACGGTGATTGCGAATCCTTTCTCTGACCACCCCAGCTCTGATGCTGACACGTCACTTTTGTTTAGGATTTCAGTTCCTATAATTTATTATTGGCGCTTCTATCTGGCTTTTATGTACCG

mRNA sequence

CCCAAATTAAACTGCGAAATCTCGAAGGCCTTCTTTCAGAGGAAGCAGCTTCAATACAAGCTCTGGCGCGAAGCTGCGCTTGCGCCTGAATCTGCACCGGCAACCCAGGGCTGAAGCTGACAGTGAGAGAGACCAGATTGGTGACTTAACATGTCGTCTACGCTACTAGAGGTGACCCGGTCTTCGCACGAGGAGGTGGAGCGACTTGAGCGGCTTGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCCGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGACACCATCGTGTCCACCACCGACAAGCTCGTTGAGATTTATGAAGATAAGGATAATGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTTAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGGGTTGTTGATGTTAACGAGGAGGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTCTACAACCAGTATATTAATTCGAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTTTCACAGCCCCAGAAAATCTCTCGCAAACTAAAGAATTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCACTTACTTTTTCCAGCGTACAGAGCCCTTACAAGATCTTGATCGTATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCAATGGATTACCGGTACAATTGAAGGATGGGAGAACACTGTGGAAGATAATGGCCATGATCCTGCCCAGCTTAGTCTTATTGATCTTGACTATTATAGCTCGGTAGAAGAGCTGGTGGAGCTAGGTCCTGAGAGATTGAAGGAGGGGTTGGCAGCATTGGGGCTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTCGCAAAACCGTCCCGGCAACCAGTTCAGAATGGGGCAGCTGCAGCTTCACTACACAATGAAAATTTGAAACAAGTTGCTCTGATGGAAGCAAAAATTGAAAAAATGTGCGATCTTCTGGATGAGACTATCGACAGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAGCAAATTTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTCAAATGTGAGATATGCGGGAACTATAGTTATTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTCAATGAAATTACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAGCAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAAGAATCATGGACTTCTTTCTTATCGGTTCCTATTATGGATAGATGGTCGTTGAGGTTTGGGAGAAGCACTTGGTCATGTTGATTGAATGGAGATTATGAAATGCTCTAGCCAATTTTACTCGTAGTCAGATTGTAATGCATTTTTGGAAGCTAAATTTGAGAAATCACGTTCTATTCTGATTTAGAAATGAGCTGAGATTATTTTTCTGTATTATTTGAAGTTCCTTTTATGAATTCGACATGAATGTCGCCATCTATCTTTGGTTATTTCAATTACATAGAAAATGAGGAAGTGCCGAAAACGTTGCTTTCATCAGCTTTCCTCGCTCCTCGTTTGTTTCTGAACGGTGATTGCGAATCCTTTCTCTGACCACCCCAGCTCTGATGCTGACACGTCACTTTTGTTTAGGATTTCAGTTCCTATAATTTATTATTGGCGCTTCTATCTGGCTTTTATGTACCG

Coding sequence (CDS)

ATGTCGTCTACGCTACTAGAGGTGACCCGGTCTTCGCACGAGGAGGTGGAGCGACTTGAGCGGCTTGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCCGGCCGGGACCGTTTGCTACAGAGTCACCGAGTCCGCAACATGATCGACACCATCGTGTCCACCACCGACAAGCTCGTTGAGATTTATGAAGATAAGGATAATGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTTAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAAGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGGGTTGTTGATGTTAACGAGGAGGATGGTCTACTCAAAGAGGAACCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTCTACAACCAGTATATTAATTCGAAATTTGGAGAGGCCATCGAGTACTCTTCTTACCTGGATGTTTTTTCACAGCCCCAGAAAATCTCTCGCAAACTAAAGAATTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCACTTACTTTTTCCAGCGTACAGAGCCCTTACAAGATCTTGATCGTATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCAATGGATTACCGGTACAATTGAAGGATGGGAGAACACTGTGGAAGATAATGGCCATGATCCTGCCCAGCTTAGTCTTATTGATCTTGACTATTATAGCTCGGTAGAAGAGCTGGTGGAGCTAGGTCCTGAGAGATTGAAGGAGGGGTTGGCAGCATTGGGGCTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGCATACACCTCTTCAATTGTTGGACAAAAAACACTTCGCAAAACCGTCCCGGCAACCAGTTCAGAATGGGGCAGCTGCAGCTTCACTACACAATGAAAATTTGAAACAAGTTGCTCTGATGGAAGCAAAAATTGAAAAAATGTGCGATCTTCTGGATGAGACTATCGACAGAACCAAAGACAACATTGTTAAGAAGCAAGCCTTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAAGAGACGCAAGCTGAGTCTGAAAGTGATGATGACGAGCAGCAAATTTATAATCCGCTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTCAAATGTGAGATATGCGGGAACTATAGTTATTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCGAATACAAAGAACTTCAATGAAATTACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATTCAAGAACGACAAGGAGTTAGCAAGTGGCGACCAGATCTGGAAGAAGAATACGAAGATAAGGAGGGTAACATTTACAATAAGAAGACATATACAGATCTGCAACGCCAGGGGTTGATATAA

Protein sequence

MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVEIYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYEEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI

Homology

[Close]

BLAST of CmoCh18G013420 vs. ExPASy Swiss-Prot
Match: Q9FG01 (Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1)

HSP 1 Score: 774.6 bits (1999), Expect = 6.8e-223
Identity = 385/509 (75.64%), Postives = 441/509 (86.64%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLE TRS+HEEVERLERLVV++LQ EP S +DRL+Q HRVR+MI++I+ TT+KLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEE-DGLL 120
            YEDKD A  DEIAALGGQT  GTNVFS FYDRLKEIREYH+RHP+ R+VD NE+ +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQ 180
           KEEP I FSGEE  GRYLDLH++YNQYINSKFGE +EYS+YLDVFSQP+KI RKLK SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 YREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPA 240
           Y +Y+E LL YL YFFQRTEPLQDLDRI SKV S+FEEQ+  G +EG +N +      P+
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNEL-----IPS 240

Query: 241 QLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKK 300
           Q ++IDLDYYS+VEELV++GPE+LKE L ALGLK GGT QQRAERLFLTKHTPL+ LDKK
Sbjct: 241 QHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKK 300

Query: 301 HFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTY 360
           HFA+P     QNG A ++  +EN K++AL EAK++K+C+LLDETI+RTK NIVKKQ+LTY
Sbjct: 301 HFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTY 360

Query: 361 EEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG 420
           EE+E ERE EE   E ESDD++  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICG
Sbjct: 361 EEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICG 420

Query: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWR 480
           NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAK+LWKRIQERQGV+KWR
Sbjct: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWR 480

Query: 481 PDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           P+LEEEYED+EGNIYNKKTY+DLQRQGLI
Sbjct: 481 PELEEEYEDREGNIYNKKTYSDLQRQGLI 504

[Close]

BLAST of CmoCh18G013420 vs. ExPASy Swiss-Prot
Match: Q12874 (Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.8e-122
Identity = 246/516 (47.67%), Postives = 335/516 (64.92%), Query Frame = 0


Query: 4   TLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVEIYE 63
           T+LE  R  HEE ERL  ++ KE+  + ++ RD++   HR R M D  +  +  L ++Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEE-DGLLK-- 123
           DKD  RK+E+ A+      G N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAIS-----GPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKL 183
               EE Q  +EF+ EE +GRYLDLH+ Y +YIN K  E ++Y +YL +F Q   I ++ 
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 KNSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGW-ENTVED 243
           KN+ +Y+ YLE LL YL  +  R +PLQD + +F K+++EFE++W  GT  GW + T   
Sbjct: 183 KNA-EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSA 242

Query: 244 NGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPL 303
             H  A L   DL  +SS EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK   L
Sbjct: 243 LTHAGAHL---DLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 302

Query: 304 QLLDKKHFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVK 363
           + LD   FAK    P   G    +  N   K +A +EA+I +  ++L E    T +N+ +
Sbjct: 303 ESLDTSLFAK---NPKSKGTKRDTERN---KDIAFLEAQIYEYVEILGEQRHLTHENVQR 362

Query: 364 KQALTYEEIEAEREEEETQAESESDDDEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQE 423
           KQA T E  E E EEEE  +ESES+D+E + IYNP  LP+GWDGKPIPYWLYKLHGL   
Sbjct: 363 KQARTGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 422

Query: 424 FKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQER 483
           + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW +++ +
Sbjct: 423 YNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQ 482

Query: 484 QGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           +   +W+PD EEEYED  GN+ NKKTY DL+RQGL+
Sbjct: 483 KASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501

[Close]

BLAST of CmoCh18G013420 vs. ExPASy Swiss-Prot
Match: Q9D554 (Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2)

HSP 1 Score: 440.3 bits (1131), Expect = 3.0e-122
Identity = 245/516 (47.48%), Postives = 335/516 (64.92%), Query Frame = 0


Query: 4   TLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVEIYE 63
           T+LE  R  HEE ERL  ++ KE+  + ++ RD++   HR R M D  +  +  L ++Y+
Sbjct: 3   TILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYD 62

Query: 64  DKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEE-DGLLK-- 123
           DKD  RK+E+ A+      G N F+ FY+RLK+I+E+HR+HP    V ++ E + LLK  
Sbjct: 63  DKDGLRKEELNAIS-----GPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR 122

Query: 124 ----EEPQ--IEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKL 183
               EE Q  +EF+ EE +GRYLDLH+ Y +YIN K  E ++Y +YL +F Q   I ++ 
Sbjct: 123 ENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKER 182

Query: 184 KNSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGW-ENTVED 243
           KN+ +Y+ YLE LL YL  +  R +PLQD + +F K++++FE++W  GT  GW + T   
Sbjct: 183 KNA-EYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSA 242

Query: 244 NGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPL 303
             H  A L   DL  +SS EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK   L
Sbjct: 243 LTHAGAHL---DLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSL 302

Query: 304 QLLDKKHFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVK 363
           + LD   FAK    P   G    +  N   K +A +EA+I +  ++L E    T +N+ +
Sbjct: 303 ESLDTSLFAK---NPKSKGTKRDTERN---KDIAFLEAQIYEYVEILGEQRQLTHENVQR 362

Query: 364 KQALTYEEIEAEREEEETQAESESDDDEQQ-IYNPLKLPMGWDGKPIPYWLYKLHGLGQE 423
           KQA T E  E E EEEE  +ESES+D+E + IYNP  LP+GWDGKPIPYWLYKLHGL   
Sbjct: 363 KQARTGE--EREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNIN 422

Query: 424 FKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQER 483
           + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW +++ +
Sbjct: 423 YNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQ 482

Query: 484 QGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           +   +W+PD EEEYED  GN+ NKKTY DL+RQGL+
Sbjct: 483 KASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501

[Close]

BLAST of CmoCh18G013420 vs. ExPASy Swiss-Prot
Match: O46106 (Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 2.5e-108
Identity = 229/519 (44.12%), Postives = 327/519 (63.01%), Query Frame = 0


Query: 4   TLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVEIYE 63
           TLLE  R  HEE ERL +L+V E   +    ++R+   HR++ +++   ++T +L ++YE
Sbjct: 3   TLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYE 62

Query: 64  DKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEE-DGLLK-- 123
           DKDN RK EIAAL      G N F+ FY RLK+I+++++ HPA   V ++ E D +++  
Sbjct: 63  DKDNERKAEIAALS-----GPNEFNEFYARLKQIKQFYKSHPAEVSVPLSVEFDEMIRVY 122

Query: 124 EEPQ-----IEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLK 183
             P      +EF+ EE  GRYLDL+E Y  Y+N +  E ++Y +YL  F     I R+ K
Sbjct: 123 NNPDDMSALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSFDHVFDIPRERK 182

Query: 184 NSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGW-----ENT 243
           N R+YR Y+E L  YL +F  R +PL DL+    KVE +F+ QW+ GT  G+     E+ 
Sbjct: 183 N-REYRIYIETLNDYLHHFILRIQPLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESA 242

Query: 244 VEDNGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKH 303
           + + G      + +DL  +SS EEL  LG +RLK  L ALGLK GGT+++RA+RLF TK 
Sbjct: 243 LANTG------AHLDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKG 302

Query: 304 TPLQLLDKKHFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDN 363
                LD    AK   +P    A+A S  +E  K++A +EA + K  DLL E    TK+N
Sbjct: 303 K--STLDPALMAK---KPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKEN 362

Query: 364 IVKKQALTYEEIEAEREEEETQAESESDDDEQQI-YNPLKLPMGWDGKPIPYWLYKLHGL 423
           + +KQA T  E + + + E +++++E D D   + YNP  LP+GWDGKPIPYWLYKLHGL
Sbjct: 363 VQRKQARTGGERD-DSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYKLHGL 422

Query: 424 GQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRI 483
              + CEICGN++Y G +AF+RHF EWRH HGMRCLGIPNT +F  +T IE+A  LW+++
Sbjct: 423 NISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKL 482

Query: 484 QERQGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           + ++   +W  D EEE+ED  GN+ N+KT+ DL+RQGL+
Sbjct: 483 KSQKQSERWVADQEEEFEDSLGNVVNRKTFEDLKRQGLL 503

[Close]

BLAST of CmoCh18G013420 vs. ExPASy Swiss-Prot
Match: O59706 (Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap61 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.5e-76
Identity = 187/536 (34.89%), Postives = 284/536 (52.99%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MS ++LE  R +HEE+ERL++ +V      P + R+RL   H+    ++    T+ KL+ 
Sbjct: 1   MSESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLV 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120
            +E  D  +  E+A +     L     + FY  L EI+E+H+++P  +V D+++   +  
Sbjct: 61  SHESSDRLKDQEVARINADDDL-----TEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKP 120

Query: 121 EEPQIE-----FSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLK 180
            +P I+     F GEE +GR++DL+E Y +YIN    + I Y  YL       +I +  K
Sbjct: 121 SQPGIDEIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYLKNLEDFDQIPKPEK 180

Query: 181 NSRQYREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWEN---TVE 240
           N + Y  Y+ +L  YL  F++RT PL +LD+I +  ++EF+  W  G + GW +     E
Sbjct: 181 N-QTYINYITHLYEYLVSFYRRTHPLSNLDKIIAVFDTEFDAAWEAG-LPGWYSHNAEAE 240

Query: 241 DNGHDPAQLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTP 300
            +G D  +       +Y  V +                               F  K T 
Sbjct: 241 KDGKDSTEA------FYCEVCQ------------------------------KFFGKITV 300

Query: 301 LQLLDKKHFAKPSRQPVQNGAAAASLHNENLKQ-----VALMEAKIEKMCDLLDETIDRT 360
            +   KK  A          ++ ++  N N KQ     +A +E  I+K+  LLD+    T
Sbjct: 301 FE-AHKKSKAHNKAVKRMQSSSPSTTSNTNEKQKGPKAIARIEFLIKKLTSLLDDVRKDT 360

Query: 361 KDNIVKKQALTYEEIEAEREEEETQA--------------ESESD-DDEQQIYNPLKLPM 420
           ++N+V++Q LT  E  AE E  E +A              + ESD DDE++IYNPLKLP+
Sbjct: 361 RENVVRRQTLTAAERLAEVEAAEREAFEQSTPSVSVEGNQDEESDQDDEEKIYNPLKLPL 420

Query: 421 GWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKN 480
           GWDGKPIP+WL+KLHGLG+EF CEICGNY Y GR+AF++HF E RH +G++CLGI  +  
Sbjct: 421 GWDGKPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPL 480

Query: 481 FNEITSIEEAKDLWKRIQERQGVSKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           FN+ITSI+EA  LW++ +      +       E ED EGN+ ++K Y DL+ QGL+
Sbjct: 481 FNQITSIDEALQLWQKYKVDSKKRETTMASLNEMEDDEGNVMSEKVYNDLKAQGLL 492

[Close]

BLAST of CmoCh18G013420 vs. ExPASy TrEMBL
Match: A0A6J1G0C9 (splicing factor SF3a60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449562 PE=3 SV=1)

HSP 1 Score: 1011.9 bits (2615), Expect = 9.3e-292
Identity = 508/508 (100.00%), Postives = 508/508 (100.00%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120
           IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK
Sbjct: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180

Query: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240
           REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ
Sbjct: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240

Query: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE 360
           FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE
Sbjct: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of CmoCh18G013420 vs. ExPASy TrEMBL
Match: A0A6J1HYT8 (splicing factor SF3a60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467472 PE=3 SV=1)

HSP 1 Score: 1010.7 bits (2612), Expect = 2.1e-291
Identity = 507/508 (99.80%), Postives = 508/508 (100.00%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120
           IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK
Sbjct: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180

Query: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240
           REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ
Sbjct: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240

Query: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE 360
           FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEK+CDLLDETIDRTKDNIVKKQALTYE
Sbjct: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKLCDLLDETIDRTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of CmoCh18G013420 vs. ExPASy TrEMBL
Match: A0A5D3E065 (Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G003640 PE=3 SV=1)

HSP 1 Score: 957.6 bits (2474), Expect = 2.1e-275
Identity = 478/508 (94.09%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLEVTRSSHEEVERLERL+VKELQNEPASG+DRLLQSHRVRNMIDTI+STT+KL+E
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLIE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120
           IYEDKD+ARKDEIAALGGQTT GTNVFSAFYDRLKEIREYHRRHPAARVVDV+E+DGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLD+FSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDIFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240
           REYLENLLAYL YFFQRTEPLQDLDRIFSKVESEFEE+W  GTIEGWENT +DNGHD AQ
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWAIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            SLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE 360
           FAK SRQP+QNG A AS +NENLKQVALMEAKIEK+CDLLDETI RTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGMAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDD+EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGV+KWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of CmoCh18G013420 vs. ExPASy TrEMBL
Match: A0A0A0LDU3 (Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040 PE=3 SV=1)

HSP 1 Score: 955.7 bits (2469), Expect = 7.9e-275
Identity = 477/508 (93.90%), Postives = 496/508 (97.64%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLEVTRSSHEEVERLERL+VKELQNEPASG+DRLLQSHRVR+MIDTI+STT+KLVE
Sbjct: 1   MSSTLLEVTRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120
           IYEDKD+ARKDEIAALGGQTT GTNVFSAFYDRLKEIREYHRRHPAARVVDV+E+DGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKIS+KLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQY 180

Query: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240
           REYLENLLAYL YFFQRTEPLQDLDRIFSKVESEFEE+W+ GTIEGWENT +DNGHD AQ
Sbjct: 181 REYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQ 240

Query: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
            SLIDLDYYS+VEELVELGPERLKEGL ALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 HSLIDLDYYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE 360
           FAK SRQP+QNG+A AS +NENLKQVALMEAKIEK+CDLLDETI RTKDNIVKKQALTYE
Sbjct: 301 FAKLSRQPIQNGSAVASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDD+EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGV+KWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of CmoCh18G013420 vs. ExPASy TrEMBL
Match: A0A6J1CJ06 (splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE=3 SV=1)

HSP 1 Score: 954.9 bits (2467), Expect = 1.3e-274
Identity = 475/508 (93.50%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLEVTR+SHEEVERLERL+VKELQNEPASG+DRLLQSHRVRNMIDTI+STT+KLVE
Sbjct: 1   MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEEDGLLK 120
           IYEDKD+ARKDEIAALGGQTT GTNVFSAFYDRLKEIREYHRRHPAARVVDVNE+DGLLK
Sbjct: 61  IYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLK 120

Query: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQY 180
           EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGE IEYSSYLDVFSQPQKI RKLK SRQY
Sbjct: 121 EEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEPIEYSSYLDVFSQPQKIPRKLKISRQY 180

Query: 181 REYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPAQ 240
           REY+ENLLAYL YFFQRTEPLQDLDRIFSK ESEFEE+W+TGTIEGWENT +D+GHD   
Sbjct: 181 REYMENLLAYLIYFFQRTEPLQDLDRIFSKGESEFEERWVTGTIEGWENTSKDDGHDTDP 240

Query: 241 LSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300
           L+LIDLDYYS+VEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH
Sbjct: 241 LNLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKH 300

Query: 301 FAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTYE 360
           FAK SR+P+QNGAAA SLH+ENLKQVALMEAKIEK+CDLLDETI RTKDNIVKKQALTYE
Sbjct: 301 FAKVSREPIQNGAAATSLHDENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYE 360

Query: 361 EIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420
           EIEAEREEEETQAESESDD+EQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN
Sbjct: 361 EIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGN 420

Query: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWRP 480
           YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGV+KWRP
Sbjct: 421 YSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRP 480

Query: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           DLEEEYEDKEGNIYNKKTYTDLQRQGLI
Sbjct: 481 DLEEEYEDKEGNIYNKKTYTDLQRQGLI 508

[Close]

BLAST of CmoCh18G013420 vs. TAIR 10
Match: AT5G06160.1 (splicing factor-related )

HSP 1 Score: 774.6 bits (1999), Expect = 4.8e-224
Identity = 385/509 (75.64%), Postives = 441/509 (86.64%), Query Frame = 0


Query: 1   MSSTLLEVTRSSHEEVERLERLVVKELQNEPASGRDRLLQSHRVRNMIDTIVSTTDKLVE 60
           MSSTLLE TRS+HEEVERLERLVV++LQ EP S +DRL+Q HRVR+MI++I+ TT+KLVE
Sbjct: 1   MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVE 60

Query: 61  IYEDKDNARKDEIAALGGQTTLGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEE-DGLL 120
            YEDKD A  DEIAALGGQT  GTNVFS FYDRLKEIREYH+RHP+ R+VD NE+ +  L
Sbjct: 61  TYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARL 120

Query: 121 KEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKNSRQ 180
           KEEP I FSGEE  GRYLDLH++YNQYINSKFGE +EYS+YLDVFSQP+KI RKLK SRQ
Sbjct: 121 KEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQ 180

Query: 181 YREYLENLLAYLTYFFQRTEPLQDLDRIFSKVESEFEEQWITGTIEGWENTVEDNGHDPA 240
           Y +Y+E LL YL YFFQRTEPLQDLDRI SKV S+FEEQ+  G +EG +N +      P+
Sbjct: 181 YMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNEL-----IPS 240

Query: 241 QLSLIDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKK 300
           Q ++IDLDYYS+VEELV++GPE+LKE L ALGLK GGT QQRAERLFLTKHTPL+ LDKK
Sbjct: 241 QHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKK 300

Query: 301 HFAKPSRQPVQNGAAAASLHNENLKQVALMEAKIEKMCDLLDETIDRTKDNIVKKQALTY 360
           HFA+P     QNG A ++  +EN K++AL EAK++K+C+LLDETI+RTK NIVKKQ+LTY
Sbjct: 301 HFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTY 360

Query: 361 EEIEAEREEEETQAESESDDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG 420
           EE+E ERE EE   E ESDD++  IYNPLKLP+GWDGKPIPYWLYKLHGLGQEFKCEICG
Sbjct: 361 EEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICG 420

Query: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVSKWR 480
           NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAK+LWKRIQERQGV+KWR
Sbjct: 421 NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWR 480

Query: 481 PDLEEEYEDKEGNIYNKKTYTDLQRQGLI 509
           P+LEEEYED+EGNIYNKKTY+DLQRQGLI
Sbjct: 481 PELEEEYEDREGNIYNKKTYSDLQRQGLI 504

[Close]

BLAST of CmoCh18G013420 vs. TAIR 10
Match: AT4G01000.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-08
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 244 IDLDYYSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAK 303
           ++ D ++S  ++  LG ERLK  L + GLK GGT+++RA RLFL K TPL  L KK  AK
Sbjct: 355 LNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAK 414

[Close]

BLAST of CmoCh18G013420 vs. TAIR 10
Match: AT3G06455.1 (ubiquitin family protein )

HSP 1 Score: 50.4 bits (119), Expect = 4.8e-06
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 249 YSSVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAK 304
           + +  ++  LG ERLK  L + GLK  GT+++RA RLFL K TPL  L KK  AK
Sbjct: 290 FKAATDMEVLGMERLKTELQSRGLKCRGTLRERAARLFLLKSTPLDKLPKKLLAK 344

The following BLAST results are available for this feature:

BLAST of CmoCh18G013420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG01	6.8e-223	75.64	Splicing factor SF3a60 homolog OS=Arabidopsis thaliana OX=3702 GN=ATO PE=1 SV=1	[more]
Q12874	1.8e-122	47.67	Splicing factor 3A subunit 3 OS=Homo sapiens OX=9606 GN=SF3A3 PE=1 SV=1	[more]
Q9D554	3.0e-122	47.48	Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3a3 PE=1 SV=2	[more]
O46106	2.5e-108	44.12	Splicing factor 3A subunit 3 OS=Drosophila melanogaster OX=7227 GN=noi PE=1 SV=1	[more]
O59706	2.5e-76	34.89	Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CmoCh18G013420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G0C9	9.3e-292	100.00	splicing factor SF3a60 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449562 PE=...	[more]
A0A6J1HYT8	2.1e-291	99.80	splicing factor SF3a60 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467472 PE=3 ...	[more]
A0A5D3E065	2.1e-275	94.09	Splicing factor 3A subunit 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LDU3	7.9e-275	93.90	Matrin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G603040...	[more]
A0A6J1CJ06	1.3e-274	93.50	splicing factor SF3a60 homolog OS=Momordica charantia OX=3673 GN=LOC111011434 PE...	[more]

BLAST of CmoCh18G013420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06160.1	4.8e-224	75.64	splicing factor-related	[more]
AT4G01000.1	6.7e-08	50.00	Ubiquitin-like superfamily protein	[more]
AT3G06455.1	4.8e-06	49.09	ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 352..379
None	No IPR available	PFAM	PF13297	Telomere_Sde2_2	coord: 244..303 e-value: 2.7E-26 score: 90.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..381
None	No IPR available	PANTHER	PTHR12786:SF6	BNAA03G01920D PROTEIN	coord: 1..508
None	No IPR available	PANTHER	PTHR12786	SPLICING FACTOR SF3A-RELATED	coord: 1..508
IPR024598	Splicing factor SF3a60 subunit C-terminal	PFAM	PF11931	DUF3449	coord: 329..507 e-value: 1.6E-76 score: 256.4
IPR031774	SF3A3 domain	PFAM	PF16837	SF3A3	coord: 126..205 e-value: 1.4E-24 score: 86.3
IPR021966	Splicing factor SF3a60 binding domain	PFAM	PF12108	SF3a60_bindingd	coord: 83..105 e-value: 5.9E-12 score: 45.3
IPR000690	Matrin/U1-C, C2H2-type zinc finger	PROSITE	PS50171	ZF_MATRIN	coord: 413..444 score: 9.357525

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G013420.1	CmoCh18G013420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding