CmoCh18G010370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr18: 11117949 .. 11118521 (+)
RNA-Seq Expression	CmoCh18G010370
Synteny	CmoCh18G010370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCAAATTTCCAAGAAGCGGGATCGGGACGACTCGGCTGAGTTTACTGAGTCGGAGAACGGTTCGTCCGAGGTGAAGCGACTCAGAGATGACCTTTTAGGTTTTTTCGACGAGTCCGATCCTGAACCAGCGACTCAAGATCTCGATTCGTTGATGAGGAGTTTTGAGGAAGAAATCGCCACTGCGTCGTCGTCTCCGGTGCCGGTGGTGGATTTGACGGTGGATTCCGGTGAGTCTCAGCCGGAGTTAGGTTATCTATTGGAAGCCTCCGACGATGAACTCGGTCTTCCGCCTTCTGTTACTTCGATTAGTAAGGAGGAGTTCGACGAATCGGCCGTGTTTGCGAGAGTTTCGAGTGATTCGTTGGAAGTCGGAGAGATGTGGAGGTTTGAGGATCAGATTCCTAACTATGACGCTTTCGAACTGGAAGGCGGAGATGTGTATAGCGGAAGCGATACGGCGGAGTATGTGGCGTTTGATGGACTGTTTGAGTATTCGAATCTGTGTTTGGATGCGTCGGAGAACTCGGATTTTCTTTGGCGGCAAGAATCTCTGCCGGCGCAGTAG

mRNA sequence

ATGGAGAATCAAATTTCCAAGAAGCGGGATCGGGACGACTCGGCTGAGTTTACTGAGTCGGAGAACGGTTCGTCCGAGGTGAAGCGACTCAGAGATGACCTTTTAGGTTTTTTCGACGAGTCCGATCCTGAACCAGCGACTCAAGATCTCGATTCGTTGATGAGGAGTTTTGAGGAAGAAATCGCCACTGCGTCGTCGTCTCCGGTGCCGGTGGTGGATTTGACGGTGGATTCCGGTGAGTCTCAGCCGGAGTTAGGTTATCTATTGGAAGCCTCCGACGATGAACTCGGTCTTCCGCCTTCTGTTACTTCGATTAGTAAGGAGGAGTTCGACGAATCGGCCGTGTTTGCGAGAGTTTCGAGTGATTCGTTGGAAGTCGGAGAGATGTGGAGGTTTGAGGATCAGATTCCTAACTATGACGCTTTCGAACTGGAAGGCGGAGATGTGTATAGCGGAAGCGATACGGCGGAGTATGTGGCGTTTGATGGACTGTTTGAGTATTCGAATCTGTGTTTGGATGCGTCGGAGAACTCGGATTTTCTTTGGCGGCAAGAATCTCTGCCGGCGCAGTAG

Coding sequence (CDS)

ATGGAGAATCAAATTTCCAAGAAGCGGGATCGGGACGACTCGGCTGAGTTTACTGAGTCGGAGAACGGTTCGTCCGAGGTGAAGCGACTCAGAGATGACCTTTTAGGTTTTTTCGACGAGTCCGATCCTGAACCAGCGACTCAAGATCTCGATTCGTTGATGAGGAGTTTTGAGGAAGAAATCGCCACTGCGTCGTCGTCTCCGGTGCCGGTGGTGGATTTGACGGTGGATTCCGGTGAGTCTCAGCCGGAGTTAGGTTATCTATTGGAAGCCTCCGACGATGAACTCGGTCTTCCGCCTTCTGTTACTTCGATTAGTAAGGAGGAGTTCGACGAATCGGCCGTGTTTGCGAGAGTTTCGAGTGATTCGTTGGAAGTCGGAGAGATGTGGAGGTTTGAGGATCAGATTCCTAACTATGACGCTTTCGAACTGGAAGGCGGAGATGTGTATAGCGGAAGCGATACGGCGGAGTATGTGGCGTTTGATGGACTGTTTGAGTATTCGAATCTGTGTTTGGATGCGTCGGAGAACTCGGATTTTCTTTGGCGGCAAGAATCTCTGCCGGCGCAGTAG

Protein sequence

MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEEIATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVSSDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDFLWRQESLPAQ

Homology

[Close]

BLAST of CmoCh18G010370 vs. ExPASy TrEMBL
Match: A0A6J1G1T4 (uncharacterized protein LOC111449910 OS=Cucurbita moschata OX=3662 GN=LOC111449910 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.5e-98
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60
           MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE
Sbjct: 1   MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60

Query: 61  IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120
           IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS
Sbjct: 61  IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120

Query: 121 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180
           SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF
Sbjct: 121 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180

Query: 181 LWRQESLPAQ 191
           LWRQESLPAQ
Sbjct: 181 LWRQESLPAQ 190

[Close]

BLAST of CmoCh18G010370 vs. ExPASy TrEMBL
Match: A0A6J1HYB6 (uncharacterized protein LOC111467364 OS=Cucurbita maxima OX=3661 GN=LOC111467364 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.2e-96
Identity = 185/190 (97.37%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60
           MENQISKKRDRDDSAEFTESENGS EVKRLRDDLLGFFDESDPEPATQ+LDSLMRSFEEE
Sbjct: 1   MENQISKKRDRDDSAEFTESENGSPEVKRLRDDLLGFFDESDPEPATQELDSLMRSFEEE 60

Query: 61  IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120
           IATASSSP PVVDLTV+SGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS
Sbjct: 61  IATASSSPAPVVDLTVESGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120

Query: 121 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180
           +DSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF
Sbjct: 121 TDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180

Query: 181 LWRQESLPAQ 191
           LWRQESLPAQ
Sbjct: 181 LWRQESLPAQ 190

[Close]

BLAST of CmoCh18G010370 vs. ExPASy TrEMBL
Match: A0A5A7SV83 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00920 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 163/190 (85.79%), Postives = 170/190 (89.47%), Query Frame = 0


Query: 1   MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60
           MENQ SKKRDRDDSA   ESE GS EVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE
Sbjct: 1   MENQNSKKRDRDDSA---ESETGSPEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60

Query: 61  IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120
           IATASSSPVPVVDLT DSGESQPELGYLLEASDDELGLPP   S S+EE      FAR+S
Sbjct: 61  IATASSSPVPVVDLTADSGESQPELGYLLEASDDELGLPP---SNSQEE------FARIS 120

Query: 121 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180
           +DS ++GEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGL EYSNLC D+S+NSDF
Sbjct: 121 TDSSDIGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLLEYSNLCFDSSDNSDF 178

Query: 181 LWRQESLPAQ 191
           LWRQESLPAQ
Sbjct: 181 LWRQESLPAQ 178

[Close]

BLAST of CmoCh18G010370 vs. ExPASy TrEMBL
Match: A0A1S3BEX2 (uncharacterized protein LOC103489276 OS=Cucumis melo OX=3656 GN=LOC103489276 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.7e-79
Identity = 163/190 (85.79%), Postives = 170/190 (89.47%), Query Frame = 0


Query: 1   MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60
           MENQ SKKRDRDDSA   ESE GS EVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE
Sbjct: 1   MENQNSKKRDRDDSA---ESETGSPEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60

Query: 61  IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120
           IATASSSPVPVVDLT DSGESQPELGYLLEASDDELGLPP   S S+EE      FAR+S
Sbjct: 61  IATASSSPVPVVDLTADSGESQPELGYLLEASDDELGLPP---SNSQEE------FARIS 120

Query: 121 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180
           +DS ++GEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGL EYSNLC D+S+NSDF
Sbjct: 121 TDSSDIGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLLEYSNLCFDSSDNSDF 178

Query: 181 LWRQESLPAQ 191
           LWRQESLPAQ
Sbjct: 181 LWRQESLPAQ 178

[Close]

BLAST of CmoCh18G010370 vs. ExPASy TrEMBL
Match: A0A0A0KR57 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608610 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.7e-76
Identity = 156/190 (82.11%), Postives = 164/190 (86.32%), Query Frame = 0


Query: 1   MENQISKKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEE 60
           MENQ SKKRDRDDSA   ESE GS EVKRLRDDLLGFFD+SDPEP TQDLDSLMRSFEEE
Sbjct: 1   MENQNSKKRDRDDSA---ESETGSPEVKRLRDDLLGFFDDSDPEPPTQDLDSLMRSFEEE 60

Query: 61  IATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVTSISKEEFDESAVFARVS 120
           IATASSSPVPVVDLT DS +SQPELGYLLEASDDELGLPPS         +    FAR+S
Sbjct: 61  IATASSSPVPVVDLTADSADSQPELGYLLEASDDELGLPPS---------NSQQDFARIS 120

Query: 121 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 180
           +DS ++GEMWRF DQIPNYDAFELEGGDVYSGSDTAEYVAFDGL EYSNLC DAS+NSDF
Sbjct: 121 TDSSDIGEMWRFVDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLLEYSNLCFDASDNSDF 178

Query: 181 LWRQESLPAQ 191
           LWRQESLPAQ
Sbjct: 181 LWRQESLPAQ 178

[Close]

BLAST of CmoCh18G010370 vs. TAIR 10
Match: AT1G13360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.4 bits (381), Expect = 7.5e-37
Identity = 92/190 (48.42%), Postives = 121/190 (63.68%), Query Frame = 0


Query: 7   KKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEEIATASS 66
           KKR RD+S  F E+   S EVKRLRDDL    D+SDPEP +QDLDS+M+SFE+E++T ++
Sbjct: 16  KKRVRDES--FDEAVLDSPEVKRLRDDLFDVLDDSDPEPVSQDLDSVMKSFEDELSTVTT 75

Query: 67  SPVPVVDLTVDSGESQPELGYLLEASDDELGLPP----SVTSISKEEFDESAV--FARVS 126
           +       +  +GE+QP+LGYLLEASDDELGLPP    S   ++KEE     V    R S
Sbjct: 76  T---TAQGSSTAGETQPDLGYLLEASDDELGLPPPPSISPVPVAKEEVTTETVTDLVRAS 135

Query: 127 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCLDASENSDF 186
           SDS  + E+W FED + NY   +   G      D  +YVA +GLFE+S+ C D+ +   F
Sbjct: 136 SDSSGIDEIWGFEDHVSNYGGLDFGSG----VGDGGDYVAVEGLFEFSDDCFDSGDL--F 194

Query: 187 LWRQESLPAQ 191
            WR ESLPA+
Sbjct: 196 SWRSESLPAE 194

[Close]

BLAST of CmoCh18G010370 vs. TAIR 10
Match: AT1G13360.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). )

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-30
Identity = 80/168 (47.62%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 7   KKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEEIATASS 66
           KKR RD+S  F E+   S EVKRLRDDL    D+SDPEP +QDLDS+M+SFE+E++T ++
Sbjct: 16  KKRVRDES--FDEAVLDSPEVKRLRDDLFDVLDDSDPEPVSQDLDSVMKSFEDELSTVTT 75

Query: 67  SPVPVVDLTVDSGESQPELGYLLEASDDELGLPP----SVTSISKEEFDESAV--FARVS 126
           +       +  +GE+QP+LGYLLEASDDELGLPP    S   ++KEE     V    R S
Sbjct: 76  T---TAQGSSTAGETQPDLGYLLEASDDELGLPPPPSISPVPVAKEEVTTETVTDLVRAS 135

Query: 127 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYS 169
           SDS  + E+W FED + NY   +   G      D  +YVA +G F Y+
Sbjct: 136 SDSSGIDEIWGFEDHVSNYGGLDFGSG----VGDGGDYVAVEGFFYYT 174

[Close]

BLAST of CmoCh18G010370 vs. TAIR 10
Match: AT1G13360.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1). )

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-30
Identity = 80/171 (46.78%), Postives = 106/171 (61.99%), Query Frame = 0


Query: 7   KKRDRDDSAEFTESENGSSEVKRLRDDLLGFFDESDPEPATQDLDSLMRSFEEEIATASS 66
           KKR RD+S  F E+   S EVKRLRDDL    D+SDPEP +QDLDS+M+SFE+E++T ++
Sbjct: 16  KKRVRDES--FDEAVLDSPEVKRLRDDLFDVLDDSDPEPVSQDLDSVMKSFEDELSTVTT 75

Query: 67  SPVPVVDLTVDSGESQPELGYLLEASDDELGLPP----SVTSISKEEFDESAV--FARVS 126
           +       +  +GE+QP+LGYLLEASDDELGLPP    S   ++KEE     V    R S
Sbjct: 76  T---TAQGSSTAGETQPDLGYLLEASDDELGLPPPPSISPVPVAKEEVTTETVTDLVRAS 135

Query: 127 SDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLC 172
           SDS  + E+W FED + NY   +   G      D  +YVA +GL  + + C
Sbjct: 136 SDSSGIDEIWGFEDHVSNYGGLDFGSG----VGDGGDYVAVEGLSFFHSFC 177

[Close]

BLAST of CmoCh18G010370 vs. TAIR 10
Match: AT3G25870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13360.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-26
Identity = 83/198 (41.92%), Postives = 115/198 (58.08%), Query Frame = 0


Query: 1   MENQISKKRDRDDSAEFTESENG----SSEVKRLRDDLLGFFDESDPEPATQDLDSLMRS 60
           ME+ + ++  R DS       +G    S +VKRLRDDL   FD+S  +P +QDLDS+M+S
Sbjct: 1   MEDLLEERLTRTDSVGNKRVRDGLDLDSPDVKRLRDDL---FDDSGLDPVSQDLDSVMKS 60

Query: 61  FEEEIATASSSPVPVVDLTVDSGESQPELGYLLEASDDELGLPPSVT---SISKEEFDES 120
           FE E++T +++        + SGE+QP+LGYL EASDDELGLPP +T   ++     +E+
Sbjct: 61  FENELSTTTAA--------LSSGETQPDLGYLFEASDDELGLPPPLTPPQTLLPPSCEET 120

Query: 121 AV-FARVSSDSLEVGEMWRFEDQIPNYDAFELEGGDVYSGSDTAEYVAFDGLFEYSNLCL 180
                R SSDS EVGE+  FED +  +   +L  GD             DGLFEY + CL
Sbjct: 121 VTELVRASSDSSEVGELCGFEDHVTEFGPCDL--GD-------------DGLFEYFDGCL 170

Query: 181 DASENSDFLWRQESLPAQ 191
           D+ +   F WR E LPA+
Sbjct: 181 DSGDL--FSWRPEFLPAE 170

The following BLAST results are available for this feature:

BLAST of CmoCh18G010370 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G010370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1T4	1.5e-98	100.00	uncharacterized protein LOC111449910 OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]
A0A6J1HYB6	3.2e-96	97.37	uncharacterized protein LOC111467364 OS=Cucurbita maxima OX=3661 GN=LOC111467364...	[more]
A0A5A7SV83	2.7e-79	85.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BEX2	2.7e-79	85.79	uncharacterized protein LOC103489276 OS=Cucumis melo OX=3656 GN=LOC103489276 PE=...	[more]
A0A0A0KR57	1.7e-76	82.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608610 PE=4 SV=1	[more]

BLAST of CmoCh18G010370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13360.1	7.5e-37	48.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13360.2	3.0e-30	47.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G13360.3	3.0e-30	46.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G25870.1	3.5e-26	41.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR34539:SF19	T6J4.11 PROTEIN	coord: 3..190
None	No IPR available	PANTHER	PTHR34539	T6J4.11 PROTEIN	coord: 3..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010370.1	CmoCh18G010370.1	mRNA