CmoCh17G013350 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATACCACCAAAACGATGCGTTTACCTCCTCGTAGACTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTGGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTATGGCGGCTTCACCACCTGACCTCAACGAGAAACGCCAAGCCGAGCTGCATCCCAAGAATTACCAGTCCTACGTGGAGGTGGCTAATTTGTTGAAACATGGTGGGGCCCACTTTCAAGGTATTGTCAATCCCACCCAGCTAGCTCGGTTGCTAAACCTATGA ATGAATACCACCAAAACGATGCGTTTACCTCCTCGTAGACTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTGGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTATGGCGGCTTCACCACCTGACCTCAACGAGAAACGCCAAGCCGAGCTGCATCCCAAGAATTACCAGTCCTACGTGGAGGTGGCTAATTTGTTGAAACATGGTGGGGCCCACTTTCAAGGTATTGTCAATCCCACCCAGCTAGCTCGGTTGCTAAACCTATGA ATGAATACCACCAAAACGATGCGTTTACCTCCTCGTAGACTAATGACCTCAGATGGGCCCAGTTCCAGGCCCAATAAGAGGAAAGAGAGAAAGGGCTTTGATGATGAGGCCCACCAACTGTCATTCACAGCTAAAGTATCGAAGCCGACACCGCCTCAATCCAACCACCTCCTAGCCGGCTACTTGGCTCACGAGTTCTTCACCAAAGGCACCCTCTTTGGCCAAGCTTGGGATCATCCGGATGTGTCTATGGCGGCTTCACCACCTGACCTCAACGAGAAACGCCAAGCCGAGCTGCATCCCAAGAATTACCAGTCCTACGTGGAGGTGGCTAATTTGTTGAAACATGGTGGGGCCCACTTTCAAGGTATTGTCAATCCCACCCAGCTAGCTCGGTTGCTAAACCTATGA MNTTKTMRLPPRRLMTSDGPSSRPNKRKERKGFDDEAHQLSFTAKVSKPTPPQSNHLLAGYLAHEFFTKGTLFGQAWDHPDVSMAASPPDLNEKRQAELHPKNYQSYVEVANLLKHGGAHFQGIVNPTQLARLLNL Homology
BLAST of CmoCh17G013350 vs. ExPASy TrEMBL
Match: A0A0A0KDC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088100 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40 Identity = 105/165 (63.64%), Postives = 112/165 (67.88%), Query Frame = 0
BLAST of CmoCh17G013350 vs. ExPASy TrEMBL
Match: A0A5A7T8V2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G001610 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 8.9e-40 Identity = 102/164 (62.20%), Postives = 112/164 (68.29%), Query Frame = 0
BLAST of CmoCh17G013350 vs. ExPASy TrEMBL
Match: A0A1S3CBD7 (uncharacterized protein LOC103498915 OS=Cucumis melo OX=3656 GN=LOC103498915 PE=4 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 1.2e-39 Identity = 102/165 (61.82%), Postives = 112/165 (67.88%), Query Frame = 0
BLAST of CmoCh17G013350 vs. ExPASy TrEMBL
Match: A0A5B6UNG4 (Embryo sac development arrest protein OS=Gossypium australe OX=47621 GN=EPI10_014052 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 7.3e-26 Identity = 82/151 (54.30%), Postives = 90/151 (59.60%), Query Frame = 0
BLAST of CmoCh17G013350 vs. ExPASy TrEMBL
Match: A0A0D2N9W4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G255300 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 9.6e-26 Identity = 81/149 (54.36%), Postives = 91/149 (61.07%), Query Frame = 0
BLAST of CmoCh17G013350 vs. NCBI nr
Match: KAG7014604.1 (hypothetical protein SDJN02_24783, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68 Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0
BLAST of CmoCh17G013350 vs. NCBI nr
Match: KAG6576089.1 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 255.0 bits (650), Expect = 3.7e-64 Identity = 122/126 (96.83%), Postives = 124/126 (98.41%), Query Frame = 0
BLAST of CmoCh17G013350 vs. NCBI nr
Match: XP_038906548.1 (uncharacterized protein LOC120092519 [Benincasa hispida]) HSP 1 Score: 210.7 bits (535), Expect = 8.0e-51 Identity = 112/145 (77.24%), Postives = 117/145 (80.69%), Query Frame = 0
BLAST of CmoCh17G013350 vs. NCBI nr
Match: XP_011656778.1 (uncharacterized protein LOC105435768 [Cucumis sativus] >KGN46382.1 hypothetical protein Csa_005722 [Cucumis sativus]) HSP 1 Score: 176.0 bits (445), Expect = 2.2e-40 Identity = 105/165 (63.64%), Postives = 112/165 (67.88%), Query Frame = 0
BLAST of CmoCh17G013350 vs. NCBI nr
Match: KAA0039884.1 (uncharacterized protein E6C27_scaffold122G001610 [Cucumis melo var. makuwa]) HSP 1 Score: 172.9 bits (437), Expect = 1.8e-39 Identity = 102/164 (62.20%), Postives = 112/164 (68.29%), Query Frame = 0
BLAST of CmoCh17G013350 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18 Identity = 63/158 (39.87%), Postives = 78/158 (49.37%), Query Frame = 0
BLAST of CmoCh17G013350 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 3.6e-17 Identity = 59/150 (39.33%), Postives = 73/150 (48.67%), Query Frame = 0
BLAST of CmoCh17G013350 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 ) HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10 Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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