CmoCh17G010810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G010810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 8957466 .. 8957860 (+)
RNA-Seq ExpressionCmoCh17G010810
SyntenyCmoCh17G010810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTCTCTCATGCCTTTCTTTCTTTGTTCAGGGTTCAATATTCCGGCGTCCTAGGCGTAGAGGAACCACACCACCAATCCATCCCAAACTTGGTGGTTAAATTCTACTGCGGTGACAGGTTCAATATTCTAGCGTCCTAGGCGTAAAGGAACTACACCAATCCATCCCAAACTTGGTGGTTAAATTCTATGGTGACGGTCCTAGGCGTAAAGGAACCACACCAATCCATCCGAACTTGGTGGTTAAATTCTACGGTGACAATACTACATCCCGAATTTGGTGGTTAAATTCTACTACGGTGACAATATTGCAAGGCGATGATAAAAAGCTTAACACCTCTAATTCTAAGATCTTAGAATCCACCCGAGCCTTCCATTTTTACTTCCCATAA

mRNA sequence

ATGCTTTTCTCTCATGCCTTTCTTTCTTTGTTCAGGGTTCAATATTCCGGCGTCCTAGGCGTAGAGGAACCACACCACCAATCCATCCCAAACTTGGTGGTTAAATTCTACTGCGGTGACAGCGTCCTAGGCGTAAAGGAACTACACCAATCCATCCCAAACTTGGTGGTTAAATTCTATGGTGACGGTCCTAGGCGTAAAGGAACCACACCAATCCATCCGAACTTGGTGGTTAAATTCTACGGTGACAATACTACATCCCGAATTTGGTGGTTAAATTCTACTACGGTGACAATATTGCAAGGCGATGATAAAAAGCTTAACACCTCTAATTCTAAGATCTTAGAATCCACCCGAGCCTTCCATTTTTACTTCCCATAA

Coding sequence (CDS)

ATGCTTTTCTCTCATGCCTTTCTTTCTTTGTTCAGGGTTCAATATTCCGGCGTCCTAGGCGTAGAGGAACCACACCACCAATCCATCCCAAACTTGGTGGTTAAATTCTACTGCGGTGACAGCGTCCTAGGCGTAAAGGAACTACACCAATCCATCCCAAACTTGGTGGTTAAATTCTATGGTGACGGTCCTAGGCGTAAAGGAACCACACCAATCCATCCGAACTTGGTGGTTAAATTCTACGGTGACAATACTACATCCCGAATTTGGTGGTTAAATTCTACTACGGTGACAATATTGCAAGGCGATGATAAAAAGCTTAACACCTCTAATTCTAAGATCTTAGAATCCACCCGAGCCTTCCATTTTTACTTCCCATAA

Protein sequence

MLFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLGVKELHQSIPNLVVKFYGDGPRRKGTTPIHPNLVVKFYGDNTTSRIWWLNSTTVTILQGDDKKLNTSNSKILESTRAFHFYFP
Homology
BLAST of CmoCh17G010810 vs. ExPASy TrEMBL
Match: K7MQD0 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G068500 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1   MLFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
           +L SHAFL  F VQYS VLG+EEP HQSIPNLVVK YCG  +LG
Sbjct: 62  LLLSHAFLR-FMVQYSSVLGIEEP-HQSIPNLVVKLYCGHDILG 103

BLAST of CmoCh17G010810 vs. ExPASy TrEMBL
Match: A0A5J5S263 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G092800v1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MLFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG-VKELHQSIP 54
          MLF  A LSLF V+YSGVLGVEE  HQSIPNLVVK YCGD  +G V + + S P
Sbjct: 1  MLFL-ARLSLFMVRYSGVLGVEE-QHQSIPNLVVKLYCGDDTVGEVLQQNSSTP 52

BLAST of CmoCh17G010810 vs. ExPASy TrEMBL
Match: A0A5D2D567 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D03G097700v1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MLFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG-VKELHQSIP 54
          MLF  A LSLF V+YSGVLGVEE  HQSIPNLVVK YCGD  +G V + + S P
Sbjct: 1  MLFL-ARLSLFMVRYSGVLGVEE-QHQSIPNLVVKLYCGDDTVGEVLQQNSSTP 52

BLAST of CmoCh17G010810 vs. ExPASy TrEMBL
Match: A0A5N6Q8H4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03307 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 8   LSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
           LS F V+YSGVLGVEEP HQSIPNLVVK YCGD  +G
Sbjct: 131 LSSFMVRYSGVLGVEEP-HQSIPNLVVKLYCGDDTVG 166

BLAST of CmoCh17G010810 vs. ExPASy TrEMBL
Match: A0A5N6MKY7 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_30143 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 8   LSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
           LS F V+YSGVLGVEEP HQSIPNLVVK YCGD  +G
Sbjct: 135 LSSFMVRYSGVLGVEEP-HQSIPNLVVKLYCGDDTVG 170

BLAST of CmoCh17G010810 vs. NCBI nr
Match: KAG4920634.1 (hypothetical protein JHK86_049447 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-07
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0

Query: 1   MLFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
           +L SHAFL  F VQYS VLG+EEP HQSIPNLVVK YCG  +LG
Sbjct: 62  LLLSHAFLR-FMVQYSSVLGIEEP-HQSIPNLVVKLYCGHDILG 103

BLAST of CmoCh17G010810 vs. NCBI nr
Match: CAA9893508.1 (unnamed protein product [Spirodela intermedia] >CAA9893550.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 9  SLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
          SLF V+YSGVLGVEEP HQSIPNLVVK YCGD  +G
Sbjct: 4  SLFMVRYSGVLGVEEP-HQSIPNLVVKLYCGDDTVG 38

BLAST of CmoCh17G010810 vs. NCBI nr
Match: KAB2037673.1 (hypothetical protein ES319_D03G092800v1 [Gossypium barbadense] >TYG76228.1 hypothetical protein ES288_D03G097700v1 [Gossypium darwinii])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-06
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MLFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG-VKELHQSIP 54
          MLF  A LSLF V+YSGVLGVEE  HQSIPNLVVK YCGD  +G V + + S P
Sbjct: 1  MLFL-ARLSLFMVRYSGVLGVEE-QHQSIPNLVVKLYCGDDTVGEVLQQNSSTP 52

BLAST of CmoCh17G010810 vs. NCBI nr
Match: KAG8497038.1 (hypothetical protein CXB51_008255 [Gossypium anomalum])

HSP 1 Score: 62.0 bits (149), Expect = 4.2e-06
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 2  LFSHAFLSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
          LF  A LS F V+YSGVLGVEE  HQSIPNLVVK YCGD  +G
Sbjct: 16 LFGSARLSSFMVRYSGVLGVEE-QHQSIPNLVVKLYCGDDTVG 57

BLAST of CmoCh17G010810 vs. NCBI nr
Match: RYR42384.1 (hypothetical protein Ahy_A08g038856 [Arachis hypogaea])

HSP 1 Score: 61.6 bits (148), Expect = 5.5e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 8  LSLFRVQYSGVLGVEEPHHQSIPNLVVKFYCGDSVLG 45
          LS F V+YSGVLGVEEP HQSIPNLVVK YCGD  +G
Sbjct: 53 LSSFMVRYSGVLGVEEP-HQSIPNLVVKLYCGDDTVG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
K7MQD04.1e-0772.73Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G068500 PE=4 SV=1[more]
A0A5J5S2632.1e-0666.67Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G092800v1 PE... [more]
A0A5D2D5672.1e-0666.67Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D03G097700v1 PE=... [more]
A0A5N6Q8H42.7e-0678.38Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03307 PE=4 SV=1[more]
A0A5N6MKY72.7e-0678.38Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_30143 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG4920634.18.5e-0772.73hypothetical protein JHK86_049447 [Glycine max][more]
CAA9893508.13.2e-0680.56unnamed protein product [Spirodela intermedia] >CAA9893550.1 unnamed protein pro... [more]
KAB2037673.14.2e-0666.67hypothetical protein ES319_D03G092800v1 [Gossypium barbadense] >TYG76228.1 hypot... [more]
KAG8497038.14.2e-0672.09hypothetical protein CXB51_008255 [Gossypium anomalum][more]
RYR42384.15.5e-0678.38hypothetical protein Ahy_A08g038856 [Arachis hypogaea][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G010810.1CmoCh17G010810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane