CmoCh17G010430 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G010430
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionMitochondrial transcription factor 1
LocationCmo_Chr17: 8834834 .. 8835529 (+)
RNA-Seq ExpressionCmoCh17G010430
SyntenyCmoCh17G010430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCGAAGGTTATTCTCATGGCCGACCCCGTCACAAGGCCCGCCCATGTCTTGATTCTGACACCATTGGTGGTGTTGAAAAGGGTGCAATTTTGCACCAAAACGTCCAACACACTTCTCTCTGTTTTATACTTGCCCAAGCTACCGACACTGATGCCATGTCCAGGGCCACAAGTGATATTGGTGACGGTGACTTTCTCACAACTATGGCCAATAGAGACACAATCATCACCGGTGCCAATGACGCCGTTAGAGATGCTGATCAATGTTGAGGTGCTAAGGTGCATTCCATCGGTATTGGGGCTGTTTCCCGGAGCCATAATGTTCATGTTGGTTGCGGTGAAATTGTAGCATCTGAACACCGTCGTGTGAAAGCCCTTGCTGTTAATTGAAGTCAGCCCATCAACAATTGAATGGTTCACCTTCGAGAATTTAATCGACTACAAATAATAATAATAATAATAAATAAATCAATCAATCAATTAAATACAATTTTGTAATTATCTTGTAATTTATTATCAAATAAGAAGTGATTGAATTATGCATAATTATAGTTACGTTTGGAAGAGCCTGGCACTTGTTGTTGGTCTTGCAGTCATTGTAGGGCCACGCGGCGGCGCCTTGGCCGTCAAAAACGCCGGAGCCGGTGAGTATGAAGCCGATTATGTCTTCGATGGAGATCCATTCAGTTGA

mRNA sequence

ATGTTGTCGAAGGTTATTCTCATGGCCGACCCCGTCACAAGGCCCGCCCATGTCTTGATTCTGACACCATTGGTGGTGTTGAAAAGGGTGCAATTTTGCACCAAAACGTCCAACACACTTCTCTCTGTTTTATACTTGCCCAAGCTACCGACACTGATGCCATGTCCAGGGCCACAAGTGATATTGGTGACGGTGACTTTCTCACAACTATGGCCAATAGAGACACAATCATCACCGGTGCCAATGACGCCGTTAGAGATGCTGATCAATGTTGAGGTGCTAAGTTACGTTTGGAAGAGCCTGGCACTTGTTGTTGGTCTTGCAGTCATTGTAGGGCCACGCGGCGGCGCCTTGGCCGTCAAAAACGCCGGAGCCGGTGAGTATGAAGCCGATTATGTCTTCGATGGAGATCCATTCAGTTGA

Coding sequence (CDS)

ATGTTGTCGAAGGTTATTCTCATGGCCGACCCCGTCACAAGGCCCGCCCATGTCTTGATTCTGACACCATTGGTGGTGTTGAAAAGGGTGCAATTTTGCACCAAAACGTCCAACACACTTCTCTCTGTTTTATACTTGCCCAAGCTACCGACACTGATGCCATGTCCAGGGCCACAAGTGATATTGGTGACGGTGACTTTCTCACAACTATGGCCAATAGAGACACAATCATCACCGGTGCCAATGACGCCGTTAGAGATGCTGATCAATGTTGAGGTGCTAAGTTACGTTTGGAAGAGCCTGGCACTTGTTGTTGGTCTTGCAGTCATTGTAGGGCCACGCGGCGGCGCCTTGGCCGTCAAAAACGCCGGAGCCGGTGAGTATGAAGCCGATTATGTCTTCGATGGAGATCCATTCAGTTGA

Protein sequence

MLSKVILMADPVTRPAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPTLMPCPGPQVILVTVTFSQLWPIETQSSPVPMTPLEMLINVEVLSYVWKSLALVVGLAVIVGPRGGALAVKNAGAGEYEADYVFDGDPFS
Homology
[Close]
BLAST of CmoCh17G010430 vs. ExPASy TrEMBL
Match: A0A5A7QSC8 (Mitochondrial transcription factor 1 OS=Striga asiatica OX=4170 GN=STAS_25437 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 16  AHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPTLMPCPGPQVILVTVTFSQLWPIET 75
           AHVLILTP  V  +VQF   TS T  S  Y P+LP L+PCPGP    VT T     PI+T
Sbjct: 26  AHVLILTPFSVPSKVQFFKVTSATFPSPSYFPRLPMLIPCPGPHHTPVTFTPVHPSPIDT 85

Query: 76  QSSPVPMTPLEMLINVEVLSYVW 99
           QSSPVP+  +E +I V +   +W
Sbjct: 86  QSSPVPI--IESVIRVLLERAMW 106

[Close]
BLAST of CmoCh17G010430 vs. ExPASy TrEMBL
Match: A0A426ZBR6 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00021546 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.7e-06
Identity = 48/120 (40.00%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 15  PAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPT----------------------- 74
           P HVLI TPLVV   VQF T T +T  S +YLP+LPT                       
Sbjct: 24  PGHVLIRTPLVVPDTVQFRTVTPDTSSSFMYLPRLPTLHDSTGHCRCWDLPVGRRRKVFD 83

Query: 75  ----LMPCPGPQVILVTVTFSQLWPIETQSSPVPM-TPLEMLINVEVLSYVWKSLALVVG 107
               LMP PGPQV          WPIE QSSPVPM  P++M ++ ++L ++   L L  G
Sbjct: 84  ESPYLMPWPGPQVTSDICKLFTPWPIEIQSSPVPMLRPVKMTLS-DLLMWMPSVLGLSAG 142

[Close]
BLAST of CmoCh17G010430 vs. ExPASy TrEMBL
Match: A0A444DSG5 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00035898 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.7e-06
Identity = 48/120 (40.00%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 15  PAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPT----------------------- 74
           P HVLI TPLVV   VQF T T +T  S +YLP+LPT                       
Sbjct: 24  PGHVLIRTPLVVPDTVQFRTVTPDTSSSFMYLPRLPTLHDSTGHCRCWDLPVGRRRKVFD 83

Query: 75  ----LMPCPGPQVILVTVTFSQLWPIETQSSPVPM-TPLEMLINVEVLSYVWKSLALVVG 107
               LMP PGPQV          WPIE QSSPVPM  P++M ++ ++L ++   L L  G
Sbjct: 84  ESPYLMPWPGPQVTSDICKLFTPWPIEIQSSPVPMLRPVKMTLS-DLLMWMPSVLGLSAG 142

[Close]
BLAST of CmoCh17G010430 vs. ExPASy TrEMBL
Match: A0A6N2MR69 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS387283 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.7e-06
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 0 

Query: 3   SKVILMADPVTRPAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPTLMPCPGPQVIL 62
           SK +L A P  +  H  ILTP  V + VQF T    T  S+ YLPKLPTLMPCPGP V  
Sbjct: 5   SKCMLDASPPYKSGHDFILTPFAVFEMVQFLTNIPETGFSLGYLPKLPTLMPCPGPHVTP 64

Query: 63  VTVTFSQLWPIETQSSPVPMTPLEMLI-------NVEVLSYVWKSLALVVGLAVIVGPRG 122
           VT   S    +E +   +    +++L        +  ++ Y W++  + +       P  
Sbjct: 65  VTCRCSHGKMLEGEVLALQHINMKVLAISSSYISDQSIVDYHWEAFTIFIFATSTFAPCN 124

[Close]
BLAST of CmoCh17G010430 vs. ExPASy TrEMBL
Match: A0A6N2MID2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS362578 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 0 

Query: 30 VQFCTKTSNTLLSVLYLPKLPTLMPCPGPQVILVTVTFSQLWPIETQSSPVPM 83
          VQF T    T  S+ YLPKLPTLMPCPGP V  VT + S   P E QSSPVP+
Sbjct: 2  VQFLTNIPETGFSLGYLPKLPTLMPCPGPHVTPVTCSSSVPSPTEIQSSPVPI 54

[Close]
BLAST of CmoCh17G010430 vs. NCBI nr
Match: GER48275.1 (mitochondrial transcription factor 1 [Striga asiatica])

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0 

Query: 16  AHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPTLMPCPGPQVILVTVTFSQLWPIET 75
           AHVLILTP  V  +VQF   TS T  S  Y P+LP L+PCPGP    VT T     PI+T
Sbjct: 26  AHVLILTPFSVPSKVQFFKVTSATFPSPSYFPRLPMLIPCPGPHHTPVTFTPVHPSPIDT 85

Query: 76  QSSPVPMTPLEMLINVEVLSYVW 99
           QSSPVP+  +E +I V +   +W
Sbjct: 86  QSSPVPI--IESVIRVLLERAMW 106

[Close]
BLAST of CmoCh17G010430 vs. NCBI nr
Match: RWW01082.1 (hypothetical protein GW17_00035898 [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 48/120 (40.00%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 15  PAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPT----------------------- 74
           P HVLI TPLVV   VQF T T +T  S +YLP+LPT                       
Sbjct: 24  PGHVLIRTPLVVPDTVQFRTVTPDTSSSFMYLPRLPTLHDSTGHCRCWDLPVGRRRKVFD 83

Query: 75  ----LMPCPGPQVILVTVTFSQLWPIETQSSPVPM-TPLEMLINVEVLSYVWKSLALVVG 107
               LMP PGPQV          WPIE QSSPVPM  P++M ++ ++L ++   L L  G
Sbjct: 84  ESPYLMPWPGPQVTSDICKLFTPWPIEIQSSPVPMLRPVKMTLS-DLLMWMPSVLGLSAG 142

[Close]
BLAST of CmoCh17G010430 vs. NCBI nr
Match: RZS22268.1 (hypothetical protein BHM03_00055014 [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 48/120 (40.00%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 15  PAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPT----------------------- 74
           P HVLI TPLVV   VQF T T +T  S +YLP+LPT                       
Sbjct: 24  PGHVLIRTPLVVPDTVQFRTVTPDTSSSFMYLPRLPTLHDSTGHCRCWHLPVGRRRKVFD 83

Query: 75  ----LMPCPGPQVILVTVTFSQLWPIETQSSPVPM-TPLEMLINVEVLSYVWKSLALVVG 107
               LMP PGPQV          WPIE QSSPVPM  P++M ++ ++L ++   L L  G
Sbjct: 84  ESPYLMPWPGPQVTSDICKLFTPWPIEIQSSPVPMLRPVKMTLS-DLLMWMPSVLGLSAG 142

[Close]
BLAST of CmoCh17G010430 vs. NCBI nr
Match: RRT61404.1 (hypothetical protein B296_00021546 [Ensete ventricosum])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 48/120 (40.00%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 15  PAHVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPT----------------------- 74
           P HVLI TPLVV   VQF T T +T  S +YLP+LPT                       
Sbjct: 24  PGHVLIRTPLVVPDTVQFRTVTPDTSSSFMYLPRLPTLHDSTGHCRCWDLPVGRRRKVFD 83

Query: 75  ----LMPCPGPQVILVTVTFSQLWPIETQSSPVPM-TPLEMLINVEVLSYVWKSLALVVG 107
               LMP PGPQV          WPIE QSSPVPM  P++M ++ ++L ++   L L  G
Sbjct: 84  ESPYLMPWPGPQVTSDICKLFTPWPIEIQSSPVPMLRPVKMTLS-DLLMWMPSVLGLSAG 142

[Close]
BLAST of CmoCh17G010430 vs. NCBI nr
Match: PIN11476.1 (hypothetical protein CDL12_15921 [Handroanthus impetiginosus])

HSP 1 Score: 55.1 bits (131), Expect = 5.8e-04
Identity = 36/75 (48.00%), Postives = 42/75 (56.00%), Query Frame = 0 

Query: 17 HVLILTPLVVLKRVQFCTKTSNTLLSVLYLPKLPTLMPCPGPQVILVTVTFSQLWPIETQ 76
          HV IL PL V  +VQF T    T  S  +LP+LP L+P PGP +           P+E Q
Sbjct: 22 HVFILMPLSVSLKVQFLTCIPCTSFSATFLPRLPMLIPWPGPHITFCMDKSFISSPMEIQ 81

Query: 77 SSPVPMTPLEMLINV 92
          SSPVPMT   MLI V
Sbjct: 82 SSPVPMTESVMLIIV 96

The following BLAST results are available for this feature:
BLAST of CmoCh17G010430 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G010430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7QSC81.6e-0750.60Mitochondrial transcription factor 1 OS=Striga asiatica OX=4170 GN=STAS_25437 PE... [more]
A0A426ZBR68.7e-0640.00Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00021546 PE=4 SV=1[more]
A0A444DSG58.7e-0640.00Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00035898 PE=4 SV=1[more]
A0A6N2MR698.7e-0633.07Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS387283 PE=4 SV=... [more]
A0A6N2MID22.5e-0560.38Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS362578 PE=4 SV=... [more]
BLAST of CmoCh17G010430 vs. NCBI nr
Match NameE-valueIdentityDescription
GER48275.13.3e-0750.60mitochondrial transcription factor 1 [Striga asiatica][more]
RWW01082.11.8e-0540.00hypothetical protein GW17_00035898 [Ensete ventricosum][more]
RZS22268.11.8e-0540.00hypothetical protein BHM03_00055014 [Ensete ventricosum][more]
RRT61404.11.8e-0540.00hypothetical protein B296_00021546 [Ensete ventricosum][more]
PIN11476.15.8e-0448.00hypothetical protein CDL12_15921 [Handroanthus impetiginosus][more]
BLAST of CmoCh17G010430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G010430.1CmoCh17G010430.1mRNA