CmoCh17G008610 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G008610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 7927365 .. 7928939 (+)
RNA-Seq ExpressionCmoCh17G008610
SyntenyCmoCh17G008610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGAGCGCGAAGCTTAAACCCTAAACCCCGCGGGGAATTTCCTCTTCATCTTCCTCAATTCAAATTCACCACAGATAATGGCGCCAGTGATTCGACCATTGAGGAAATGCCTTCAGCTTTCTTCTTCTTCTTCTCACAAAGCACTAATTTGCAAGCGCACCGACAAAATCCCATCACATTCCCACCTGAAAACCCTACATTTCCGACATGCTCAGATTCGTATTCGAAGGAACTTGATTTCGGATATGAACTTGATTTCTCTCTCCCAATCAGGTTTGCTTCTCTGTTCTTCTATCTGCCGCGGAATCTAGAAGCTGTTGAAAAAGTTAATTTAGTGTCCATCGGGTTTCGTAGTTCTTCAATTTTTTGTATTGTAGCTCTGTAATTAGCTTTGGATAGTTTATTTAGATTAATAATTTATTGTATGGATGAGTTCTGCCTTCGGTTCTTCGTTTTTTTTTTTCTTACAATTAATCCACAGAAGCTACACGAGCGTCCCCGTAATTAGCAAGCAAAAATTTTCACGAACGGTTGAAGAATTGAGCATCGCTGTTTCTTAGTGGGTTGTTTTTCGGGAGAAATAACTCTTCTGCAGTAGAAGAATTTCGATTGAATAATATGCACCACCATGCTTCCCTAGAACTACCATGTTCTCCGGGAATGGAGGTGCTTAGCTTGGCCAGATAGTCTAGAAACAATGCCAACTCAACCCTATGCTGGCCCTGAATTCAAGTATGAGTTTGATGGCCCTCAATATTTTCCATATTCTGAATCCAAATATGATGAACAGTATGAATAAATAATTGCTTGCATATTGTGTCGGTGACAATCTTCATAATCTCGATCTTATTTTAATATTATCATCTTGCCCCAATTATTAAATCACAATGCCTCCGAATTTTCTGAGATGACTATGTTTGTACACAGGGAATTGGATAATGAATATGTTGAAGCAAGGAGTGCGGCTCTGTTTTCCTTCATAAATCTTTGAAGAACAAGGATAAACAGAGTTCTTTAGATGAATGGAAACTGTAAAAGCATTCATTGAAATCAATTGAAATTATTGACTCTGCAGTATTTTCATATGAGAACAGTTGTCTGCTGTTGGAGCTATTGGCGCTGTTGGATATCGATTTTTGGTGAGTAATATTGACCCTAATGTACTGAACTATCCAGAATACATAGTAGTATTGTACACAAACTGAGGAGAATGAAGTTGCTGCATCTTAAATTGCTCAGCACTTATGGTTTCCTTGCCATTCCAACTAGCAGCGTGGACATAGCGCTTAAATTAAGGAGAATGAAGTGGGAACATTGCGCCCAAATGATGATGTGACATCTCATTCCAGTTAGGAGAAGCACTCAAATCCTTTTACTAATTAAAATCTTATCTTCGTGCAGAAACTACCGCCATTTTAGTCTTTCAACCACTCATAAATTTGATGGCTTTACTAGAAAAAATGGAGAGCTATGAAGTATAACTCAATGAATAGACAACCCAACTGCTGAGGTAAGATTCCGTGCCTTCTCATGTCATTTTCAAGACATTGTGATATTTTCTGCTTTATTTTGG

mRNA sequence

CTCTGAGCGCGAAGCTTAAACCCTAAACCCCGCGGGGAATTTCCTCTTCATCTTCCTCAATTCAAATTCACCACAGATAATGGCGCCAGTGATTCGACCATTGAGGAAATGCCTTCAGCTTTCTTCTTCTTCTTCTCACAAAGCACTAATTTGCAAGCGCACCGACAAAATCCCATCACATTCCCACCTGAAAACCCTACATTTCCGACATGCTCAGATTCGTATTCGAAGGAACTTGATTTCGGATATGAACTTGATTTCTCTCTCCCAATCAGGGAATTGGATAATGAATATGTTGAAGCAAGGAGTGCGGCTCTTATTTTCATATGAGAACAGTTGTCTGCTGTTGGAGCTATTGGCGCTGTTGGATATCGATTTTTGAAACTACCGCCATTTTAGTCTTTCAACCACTCATAAATTTGATGGCTTTACTAGAAAAAATGGAGAGCTATGAAGTATAACTCAATGAATAGACAACCCAACTGCTGAGGTAAGATTCCGTGCCTTCTCATGTCATTTTCAAGACATTGTGATATTTTCTGCTTTATTTTGG

Coding sequence (CDS)

ATGGCGCCAGTGATTCGACCATTGAGGAAATGCCTTCAGCTTTCTTCTTCTTCTTCTCACAAAGCACTAATTTGCAAGCGCACCGACAAAATCCCATCACATTCCCACCTGAAAACCCTACATTTCCGACATGCTCAGATTCGTATTCGAAGGAACTTGATTTCGGATATGAACTTGATTTCTCTCTCCCAATCAGGGAATTGGATAATGAATATGTTGAAGCAAGGAGTGCGGCTCTTATTTTCATATGAGAACAGTTGTCTGCTGTTGGAGCTATTGGCGCTGTTGGATATCGATTTTTGA

Protein sequence

MAPVIRPLRKCLQLSSSSSHKALICKRTDKIPSHSHLKTLHFRHAQIRIRRNLISDMNLISLSQSGNWIMNMLKQGVRLLFSYENSCLLLELLALLDIDF
Homology
[Close]
BLAST of CmoCh17G008610 vs. NCBI nr
Match: KAG7014174.1 (hypothetical protein SDJN02_24348, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-34
Identity = 85/100 (85.00%), Postives = 86/100 (86.00%), Query Frame = 0 

Query: 1   MAPVIRPLRKCLQLSSSSSHKALICKRTDKIPSHSHLKTLHFRHAQIRIRRNLISDMNLI 60
           MAPVIRPLRKCLQLSSSSSHKALICKRTDKIPSHSHLKTLHFRHAQIRIRRNLISDMNLI
Sbjct: 1   MAPVIRPLRKCLQLSSSSSHKALICKRTDKIPSHSHLKTLHFRHAQIRIRRNLISDMNLI 60

Query: 61  SLSQSGNWIMNMLKQGVRLLFSYENSCLLLELLALLDIDF 101
           SLSQS              +FSYENSCLLLELLALLDIDF
Sbjct: 61  SLSQS--------------VFSYENSCLLLELLALLDIDF 86

The following BLAST results are available for this feature:
BLAST of CmoCh17G008610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G008610 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014174.16.5e-3485.00hypothetical protein SDJN02_24348, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh17G008610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G008610.1CmoCh17G008610.1mRNA