CmoCh17G006020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G006020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	selenoprotein F-like
Location	Cmo_Chr17: 6383272 .. 6386627 (-)
RNA-Seq Expression	CmoCh17G006020
Synteny	CmoCh17G006020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATTGTCTCGAGGCTTTGCTTCTTCACCCACAGTCGCCGGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGGTGATGCGTTTGATTCACTGGATTTTTAATTTTTTTTTTTTATACGCATTCTTGATTCGGCTTCGAATTTATATCTTTGTTATTGCATTTCTTCCATTTTCGTGACTATTTCTCGTGAATTCGGAGCAGCTTAATGATTTTGTTCGCTTATTTTCTTGATCTTCTGCGTTCTTTTGAATGATTGATTGTTCATCTTGTGTTGGGTTTGATTACGGATCTTTTTTTGCTTGATTTAGACTTGGGATTTCCGGATTACTTTGTTGTAGTCTGGATGTATTAGTGTTGGCTTTAATTTCGATATTTGAATCAATTTCTTAGTATTGTGGATAGAGTTTGCTAATGTTAGTTCTTATTTTGTTCGAAGATATGTTGGTGATGAGTTGAGAGACAGACTTAGGGTCCTTCTTCTCTTGATTGTCCGAGAATTTGTTAGGGAAGAAGATGGTTTCTGAAATTCTGATGTGATAATTTATCTTTTTTTCAAGTTTTTTCAAGAGATTACAAAACTGCGTCCAGAGATTGAATTGTGGGAAGAAAGAAGTCCTCAACATTTTGAAGCGATAGATCATCTTGTTTCTTCTGTGATTTGTTGATTATGTTTTTCAGAAATTATGTATCATGTCTTTCTCATAAGTCGTGATTTGAATGCAATTAGTGATTGTTAGTGTTATTCCTTTTGGTTACTTTCTTTTTATTTTTTGCAATGACCTTTTTCCACACCCTTTTTGATTGTTAAGCCCCAGCATAATTTTAGAGGCCGAACGGGGTTTTGGACCTTTTTCCAAACCCTTTTTTAGCTTTGTTTTCACATACATCTATTTGTTTTAGTTAAATTAAAGACATTCTTTCTTGTGAATATTGATTTCAAGTGCATTTATTATGTGCCATGTGATCACAACTCTAAAAGAATAGGAGTTGTAACAGTCTCCAAAGTGGTCATATTTGCTAAATGTGAAGAGGCTTATAAAGTTGGTTAGGAAAATTGTTTTCCACGCATTAGACTGTAAGGGCACTTTATAAAATCCTACAGGCTCCCTGTCTCTTCTCCCAATCATAGTTCTTGAAAATAGTTTTAAAAACAATAGCAGTAGCCAGTCTTTTCAAAATAGCACCCAAACATCACTTTTCGGAAAAAATAAGAAAATGATATGGTAGTTTAAGAATTTGTAAGTTTACAAATGAGTTTTACGTAAACATGTCAAAAGATGTAATTTCTAATGATGAATTCAGTGATTGTTGCACTGGCAATTCTGGCAACGCTGGATTTGCGGATTGCTAAGGACTTCAAATAGTTTTTATCCAAAATCCAGAAGAAAAAAGAAGTGATAGTATGCAAAATCTGTAACCGCTTTGTGTCAGCTTATGCAATAATTTTGAAATTTATTGTTTTTAATATTACACGCAATCCTCATGCCCAGATTTGTACTGCAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGGTATGCAAAATGTTATAAATTTGCTGATTTATGGAAGGGGAATCAATGACATCTTGTTTCTCCCCCACAAATTTCATTAACTTACCATTTCATTTGTGATTAATGCATCACACTTATAAACTGAATGCTTGTACGGCCCTGTGGTAGAGATGTCAATCGAAAACACATTAGTTTAACATATTACATAGGACTAACAATTTCTGCTTTTATGTAATTATCACAACTATGGTCCAAAATAAGGTTTCAGTAAACAAGGGAAACTAAGTCATTTTAAGAAAAAGGTGATTTAAGGGATGTGCAATGCAACCTATTAATTCCCCTTATTTTGTAAATTACCGTAGGTACATATCCATAGTATTTTAATTTTCTTACATCAGTGTTTCAAACTTCTGGTCAGATATTCCACACTCGTTATGAGACAATTACTTATTCCAAGAGGCTAGTAGTATGTTTCCCTTTTCCACTTAGCCCTATACCCTTCCATGGTGTTACAGGGACTACTGCTCTATGATAAAGGAGATCTTGATGAACTCTCCTTTTCGAGATAAAGGAAGATTGTTGTCGTAGGCTTGCTCCTTTGATATCTTGTGAGATTTGTGACTTGAGGGGAATAGTAGGATCTTCAGAGGGTCTGGCAGGTCCATTACTTGGAGTTTTTGTAACTATTAGTTTAGTCTTGTACTTTTTGACTGGTGTTCATTCTTGTAGGTTGTTGAAAACTCCTTTTGGGAGCTTGTTTTTTATATGCCCCATATATTATTTTATTTCTCTCGATGAAAGTTCTTTTTCTTTTCTTTTTCTTTTTTAAAGAAAAACACTAAAAATGCAAGAAACGTCCTTGAAAATTCTGCTATTACACTCGCACCAAAGATTCCAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTAAAACTAGGTTGATGGCTAGCAATAAAGTCTTGTTAAAACCTTGAAAAGGATGTCCCAGGGAGAAATGCCTCATATACATCCAGAATTTTGATCCTCTCAATCTCCCAGTTCAGTACTCTGTTGGTTGTATTTCATAAGTATATGCATGTGGGTGTCTTTTCATTTATTTTGACAAAGGATGAAAGCCAAGTTCATTGACTGCAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGTAACTTCTGAAGCGCCAAGACTTTCCCATCTTATACTGTCTGCATCACACATATAATATATCAGAGCAAAATCAAGTGAATGAAGAATGTTTGAGGAGGTTAATATAGTGTATAGAAGGATATAGATTTTGTAATGACCGTTGATAATCTCGATATCACACATAAGGTGAAAATTTTTTTTTTGAACATTTTTCCCCTTTTTTTTTGCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA

mRNA sequence

TTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATTGTCTCGAGGCTTTGCTTCTTCACCCACAGTCGCCGGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA

Coding sequence (CDS)

ATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA

Protein sequence

MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

Homology

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BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-18
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-18
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 155 SVEEFLSEKLER 164

[Close]

BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LE
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 34  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLE 93
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LE
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 94  VCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKRE 153
           VC  KL  +P++  F+  +K + F  + ++Y   S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 154 HILQFLKEKVKQ 165
            + +FL EK+++
Sbjct: 152 SVEEFLSEKLQR 161

[Close]

BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 0


Query: 6   GVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQE 65
           G   PA  + +  A  F A   L     + SS  C +LGF+   LCS C  L ++     
Sbjct: 7   GWLRPALGLRLLLATAFQAVSALG---AEFSSEACRELGFSSNLLCSSCDLLGQF-NLLP 66

Query: 66  LVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYT 125
           L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  + ++Y 
Sbjct: 67  LDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYV 126

Query: 126 FNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQ 165
             S P L LLDD G   E + I  W  + + +FL EK+++
Sbjct: 127 RGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.1e-91
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 8.9e-90
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEK QFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.4e-80
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]

BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A5A7T9G4 (15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001250 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 156/183 (85.25%), Postives = 161/183 (87.98%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVALAATAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQ-----------ELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIV 120
           AEYIKDQ           ELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIV
Sbjct: 61  AEYIKDQGDAFNSVIRSAELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIV 120

Query: 121 GFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRS 170
           GFIEE+KDQFPSV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RS
Sbjct: 121 GFIEEDKDQFPSVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RS 180

[Close]

BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A6J1KPJ2 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.8e-78
Identity = 149/170 (87.65%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL   VK PAT+V MA    AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSS 168
           SV VQY FNSPPKL LLDDEGQHKESIRIDNWKREHILQFL++KVK  S+
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSA 170

[Close]

BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo] >KAG7013922.1 Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CmoCh17G006020 vs. NCBI nr
Match: KAG6575383.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.3 bits (874), Expect = 4.9e-90
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKV+QRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVEQRSSAI 169

[Close]

BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_022992419.1 (selenoprotein F-like [Cucurbita maxima])

HSP 1 Score: 339.3 bits (869), Expect = 1.8e-89
Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120
           IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEK QFPSVN
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFPSVN 120

Query: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 2.9e-82
Identity = 159/172 (92.44%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV+NPAT VTM   AT +IFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELVTDCLKCCTEDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEEEKDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI 171

[Close]

BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFP 120
           AEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMRKLVFYPEIVGFIEE+KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 170
           SV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVK-RSSAI 171

[Close]

BLAST of CmoCh17G006020 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 245.0 bits (624), Expect = 4.4e-65
Identity = 111/158 (70.25%), Postives = 143/158 (90.51%), Query Frame = 0


Query: 11  ATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDC 70
           A MV ++  +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+DC
Sbjct: 7   AKMVVLSAMMILILASTIS-AKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDC 66

Query: 71  LKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPK 130
           LKCC +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIEEEK++FPSV VQY FNSPPK
Sbjct: 67  LKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPK 126

Query: 131 LILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSA 169
           LI+LD++G+HKESIRIDNWKREH+LQ+++EKVK  +++
Sbjct: 127 LIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAAS 163

The following BLAST results are available for this feature:

BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8YXY3	5.2e-18	36.36	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	8.8e-18	36.36	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	1.5e-17	36.36	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
A1Z623	2.0e-17	36.36	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
Q923V8	2.8e-16	33.75	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of CmoCh17G006020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQK6	8.1e-91	100.00	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1	[more]
A0A6J1JXH9	8.9e-90	99.41	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1	[more]
A0A1S3CC00	6.4e-80	90.12	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A5A7T9G4	6.0e-78	85.25	15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266...	[more]
A0A6J1KPJ2	7.8e-78	87.65	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1	[more]

BLAST of CmoCh17G006020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954272.1	1.7e-90	100.00	selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [...	[more]
KAG6575383.1	4.9e-90	99.41	Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022992419.1	1.8e-89	99.41	selenoprotein F-like [Cucurbita maxima]	[more]
XP_038875398.1	2.9e-82	92.44	selenoprotein F [Benincasa hispida]	[more]
XP_008460012.1	1.3e-79	90.12	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]

BLAST of CmoCh17G006020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	4.4e-65	70.25	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 89..162 e-value: 3.5E-26 score: 93.3
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 90..162 e-value: 1.3E-27 score: 95.7
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 16..167
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 16..167
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 73..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G006020.1	CmoCh17G006020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005788	endoplasmic reticulum lumen
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity