CmoCh17G006020 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATTGTCTCGAGGCTTTGCTTCTTCACCCACAGTCGCCGGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGGTGATGCGTTTGATTCACTGGATTTTTAATTTTTTTTTTTTATACGCATTCTTGATTCGGCTTCGAATTTATATCTTTGTTATTGCATTTCTTCCATTTTCGTGACTATTTCTCGTGAATTCGGAGCAGCTTAATGATTTTGTTCGCTTATTTTCTTGATCTTCTGCGTTCTTTTGAATGATTGATTGTTCATCTTGTGTTGGGTTTGATTACGGATCTTTTTTTGCTTGATTTAGACTTGGGATTTCCGGATTACTTTGTTGTAGTCTGGATGTATTAGTGTTGGCTTTAATTTCGATATTTGAATCAATTTCTTAGTATTGTGGATAGAGTTTGCTAATGTTAGTTCTTATTTTGTTCGAAGATATGTTGGTGATGAGTTGAGAGACAGACTTAGGGTCCTTCTTCTCTTGATTGTCCGAGAATTTGTTAGGGAAGAAGATGGTTTCTGAAATTCTGATGTGATAATTTATCTTTTTTTCAAGTTTTTTCAAGAGATTACAAAACTGCGTCCAGAGATTGAATTGTGGGAAGAAAGAAGTCCTCAACATTTTGAAGCGATAGATCATCTTGTTTCTTCTGTGATTTGTTGATTATGTTTTTCAGAAATTATGTATCATGTCTTTCTCATAAGTCGTGATTTGAATGCAATTAGTGATTGTTAGTGTTATTCCTTTTGGTTACTTTCTTTTTATTTTTTGCAATGACCTTTTTCCACACCCTTTTTGATTGTTAAGCCCCAGCATAATTTTAGAGGCCGAACGGGGTTTTGGACCTTTTTCCAAACCCTTTTTTAGCTTTGTTTTCACATACATCTATTTGTTTTAGTTAAATTAAAGACATTCTTTCTTGTGAATATTGATTTCAAGTGCATTTATTATGTGCCATGTGATCACAACTCTAAAAGAATAGGAGTTGTAACAGTCTCCAAAGTGGTCATATTTGCTAAATGTGAAGAGGCTTATAAAGTTGGTTAGGAAAATTGTTTTCCACGCATTAGACTGTAAGGGCACTTTATAAAATCCTACAGGCTCCCTGTCTCTTCTCCCAATCATAGTTCTTGAAAATAGTTTTAAAAACAATAGCAGTAGCCAGTCTTTTCAAAATAGCACCCAAACATCACTTTTCGGAAAAAATAAGAAAATGATATGGTAGTTTAAGAATTTGTAAGTTTACAAATGAGTTTTACGTAAACATGTCAAAAGATGTAATTTCTAATGATGAATTCAGTGATTGTTGCACTGGCAATTCTGGCAACGCTGGATTTGCGGATTGCTAAGGACTTCAAATAGTTTTTATCCAAAATCCAGAAGAAAAAAGAAGTGATAGTATGCAAAATCTGTAACCGCTTTGTGTCAGCTTATGCAATAATTTTGAAATTTATTGTTTTTAATATTACACGCAATCCTCATGCCCAGATTTGTACTGCAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGGTATGCAAAATGTTATAAATTTGCTGATTTATGGAAGGGGAATCAATGACATCTTGTTTCTCCCCCACAAATTTCATTAACTTACCATTTCATTTGTGATTAATGCATCACACTTATAAACTGAATGCTTGTACGGCCCTGTGGTAGAGATGTCAATCGAAAACACATTAGTTTAACATATTACATAGGACTAACAATTTCTGCTTTTATGTAATTATCACAACTATGGTCCAAAATAAGGTTTCAGTAAACAAGGGAAACTAAGTCATTTTAAGAAAAAGGTGATTTAAGGGATGTGCAATGCAACCTATTAATTCCCCTTATTTTGTAAATTACCGTAGGTACATATCCATAGTATTTTAATTTTCTTACATCAGTGTTTCAAACTTCTGGTCAGATATTCCACACTCGTTATGAGACAATTACTTATTCCAAGAGGCTAGTAGTATGTTTCCCTTTTCCACTTAGCCCTATACCCTTCCATGGTGTTACAGGGACTACTGCTCTATGATAAAGGAGATCTTGATGAACTCTCCTTTTCGAGATAAAGGAAGATTGTTGTCGTAGGCTTGCTCCTTTGATATCTTGTGAGATTTGTGACTTGAGGGGAATAGTAGGATCTTCAGAGGGTCTGGCAGGTCCATTACTTGGAGTTTTTGTAACTATTAGTTTAGTCTTGTACTTTTTGACTGGTGTTCATTCTTGTAGGTTGTTGAAAACTCCTTTTGGGAGCTTGTTTTTTATATGCCCCATATATTATTTTATTTCTCTCGATGAAAGTTCTTTTTCTTTTCTTTTTCTTTTTTAAAGAAAAACACTAAAAATGCAAGAAACGTCCTTGAAAATTCTGCTATTACACTCGCACCAAAGATTCCAAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAAGTAAAACTAGGTTGATGGCTAGCAATAAAGTCTTGTTAAAACCTTGAAAAGGATGTCCCAGGGAGAAATGCCTCATATACATCCAGAATTTTGATCCTCTCAATCTCCCAGTTCAGTACTCTGTTGGTTGTATTTCATAAGTATATGCATGTGGGTGTCTTTTCATTTATTTTGACAAAGGATGAAAGCCAAGTTCATTGACTGCAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGTAACTTCTGAAGCGCCAAGACTTTCCCATCTTATACTGTCTGCATCACACATATAATATATCAGAGCAAAATCAAGTGAATGAAGAATGTTTGAGGAGGTTAATATAGTGTATAGAAGGATATAGATTTTGTAATGACCGTTGATAATCTCGATATCACACATAAGGTGAAAATTTTTTTTTTGAACATTTTTCCCCTTTTTTTTTGCAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA TTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATTGTCTCGAGGCTTTGCTTCTTCACCCACAGTCGCCGGGCGAACACAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA ATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTTGCACGGAGGATTCTGATGATGCCACAAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTCTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCTGCAATTTAA MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI Homology
BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2) HSP 1 Score: 92.4 bits (228), Expect = 5.2e-18 Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4) HSP 1 Score: 91.7 bits (226), Expect = 8.8e-18 Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2) HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17 Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2) HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17 Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3) HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16 Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1) HSP 1 Score: 342.8 bits (878), Expect = 8.1e-91 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1) HSP 1 Score: 339.3 bits (869), Expect = 8.9e-90 Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 6.4e-80 Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A5A7T9G4 (15 kDa selenoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001250 PE=3 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78 Identity = 156/183 (85.25%), Postives = 161/183 (87.98%), Query Frame = 0
BLAST of CmoCh17G006020 vs. ExPASy TrEMBL
Match: A0A6J1KPJ2 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 7.8e-78 Identity = 149/170 (87.65%), Postives = 155/170 (91.18%), Query Frame = 0
BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_022954272.1 (selenoprotein F-like [Cucurbita moschata] >XP_023549321.1 selenoprotein F-like [Cucurbita pepo subsp. pepo] >KAG7013922.1 Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90 Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of CmoCh17G006020 vs. NCBI nr
Match: KAG6575383.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 341.3 bits (874), Expect = 4.9e-90 Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 0
BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_022992419.1 (selenoprotein F-like [Cucurbita maxima]) HSP 1 Score: 339.3 bits (869), Expect = 1.8e-89 Identity = 168/169 (99.41%), Postives = 168/169 (99.41%), Query Frame = 0
BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida]) HSP 1 Score: 315.5 bits (807), Expect = 2.9e-82 Identity = 159/172 (92.44%), Postives = 163/172 (94.77%), Query Frame = 0
BLAST of CmoCh17G006020 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo]) HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79 Identity = 155/172 (90.12%), Postives = 160/172 (93.02%), Query Frame = 0
BLAST of CmoCh17G006020 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein ) HSP 1 Score: 245.0 bits (624), Expect = 4.4e-65 Identity = 111/158 (70.25%), Postives = 143/158 (90.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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