CmoCh17G005310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G005310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein CURVATURE THYLAKOID 1B, chloroplastic
Location	Cmo_Chr17: 5196995 .. 5198580 (+)
RNA-Seq Expression	CmoCh17G005310
Synteny	CmoCh17G005310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTTAGTTTATCCAAGTTTTTATGGAAGAGAGAGAGAGATAGAGAGAAAAAGTATTTAGTCAGCGTAGATAGACATTCATGGGCAGCCCTAAACCCTTTTATCCAATCAAACACCTTAAAATCCCTATCCAATTCAATCCTCTCTCATAACTCACTCACACAACATTATCCAAATTGATAACGAAATCAGTGGTTCTCCATCTTCAAGCTCAGACACCCACCTCCATCTCCACATTCCCATCTCTAAATTATCAAAAAAATTTAAAAAAACCCCAACAAAAACTTGAAAATTACCCCCAAAAACAAATAAACCAACAACAAATCTTCACTTTCCATTCTAGAGGAAGCTCTTAGCTTGTTCTTGTGACATTTTGAGTGGCAATGGCTTCTTCTTCTTCCTCTACATTCGCTCTCTCTTCCTCCTCCACCCTCCTCGACTCCAAGGCCCCTCGACAATCCGCTTCGCCGTCATCCACCGTGCCGCTCCCTACTCTCCCGTCACCGCCTCCTCCGTCGACCCAAATCCGCTCTTGGAAATCCACTGCCTATTGTGAGAATTATGATGCACATTCTTTAAGTTCATAGTAAATTTAATCTCTTACCCCTAGTCTTAAAAATTTTCTTCTTTTTCAGGTCGGAAGATCGCTCGCAATGTGATGGCCATGGCGACCGGAGAAGTCCCGGCTGAAGTAGCCACCGCGGAGATGGCGGAGCTGCCGGAAATCATAAAAAAAGTTCAAGAAGCTGTATGCCAAAGAAAAAAAAATTTGAACTTTTAGTTTTTTTCTTACTATTTTTTCAATTTCTTTACAATTGGGTTGACTTTTGTTTGTCAGTGGGATAAGGTTGACGATAAGTATGCAGTCAGCTCACTTGCAGTGTCTGGTTTTGTTGCCCTTTGGGCCTCCGCCGGCGTTGTCTCGGTGAGCCTCTTTTTCCCTTTTTTCAAATCAATTTATGGTTATTTATTTATTTTTTATTTTTGGCTTCAGGCAATTGATAGGCTTCCACTAATTCCTGGACTGCTTGAGCTTGTGGGCATTGGCTACACTGGGGTAAGTGAAATTAAGGGTATTTCGTATAATTTAGTTTCATGATTTCAAAATTTATATCTGGTAATGAAATTCTTCTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTGAGTTCTTACATACCATGATGTTTGGTTTTTTTGTTACTTTTATTATGGTGTTGTTTACATTTGATGGATTTTTGCAGGGAAGCTTTGTTGCAGAAACTAAGGGAAACTTACAATGAGGTAATAGGGAGCAGCTAAAGAAGATGTGTTGGAAGAGGGATTTAATGCTGTGTGGCTAATAAGAGTTCAAATTATGGTGTTCTTTTCAAGAAAAATGATCTTTATTGCAGCTTGATTGGCAAGTATATTTGCTGAAAATGTAACTTCTTTCCCTCCTTTTCCTATTTCTTTTGTAATTGTTAGCTAAATCAATCCCAATGTGTACTTTATGCTTTTGTTACTCTTAAAATACTGTTAACTTATTGCAATTCTAAACCATGTTTGGAACCTATGCTTGGCTGCAGGTGTAA

mRNA sequence

TATTTTTAGTTTATCCAAGTTTTTATGGAAGAGAGAGAGAGATAGAGAGAAAAAGTATTTAGTCAGCGTAGATAGACATTCATGGGCAGCCCTAAACCCTTTTATCCAATCAAACACCTTAAAATCCCTATCCAATTCAATCCTCTCTCATAACTCACTCACACAACATTATCCAAATTGATAACGAAATCAGTGGTTCTCCATCTTCAAGCTCAGACACCCACCTCCATCTCCACATTCCCATCTCTAAATTATCAAAAAAATTTAAAAAAACCCCAACAAAAACTTGAAAATTACCCCCAAAAACAAATAAACCAACAACAAATCTTCACTTTCCATTCTAGAGGAAGCTCTTAGCTTGTTCTTGTGACATTTTGAGTGGCAATGGCTTCTTCTTCTTCCTCTACATTCGCTCTCTCTTCCTCCTCCACCCTCCTCGACTCCAAGGCCCCTCGACAATCCGCTTCGCCGTCATCCACCGTGCCGCTCCCTACTCTCCCGTCACCGCCTCCTCCGTCGACCCAAATCCGCTCTTGGAAATCCACTGCCTATTGTCGGAAGATCGCTCGCAATGTGATGGCCATGGCGACCGGAGAAGTCCCGGCTGAAGTAGCCACCGCGGAGATGGCGGAGCTGCCGGAAATCATAAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGACGATAAGTATGCAGTCAGCTCACTTGCAGTGTCTGGTTTTGTTGCCCTTTGGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGGCTTCCACTAATTCCTGGACTGCTTGAGCTTGTGGGCATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCTTTGTTGCAGAAACTAAGGGAAACTTACAATGAGGTGTAA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCCTCTACATTCGCTCTCTCTTCCTCCTCCACCCTCCTCGACTCCAAGGCCCCTCGACAATCCGCTTCGCCGTCATCCACCGTGCCGCTCCCTACTCTCCCGTCACCGCCTCCTCCGTCGACCCAAATCCGCTCTTGGAAATCCACTGCCTATTGTCGGAAGATCGCTCGCAATGTGATGGCCATGGCGACCGGAGAAGTCCCGGCTGAAGTAGCCACCGCGGAGATGGCGGAGCTGCCGGAAATCATAAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGACGATAAGTATGCAGTCAGCTCACTTGCAGTGTCTGGTTTTGTTGCCCTTTGGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGGCTTCCACTAATTCCTGGACTGCTTGAGCTTGTGGGCATTGGCTACACTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCTTTGTTGCAGAAACTAAGGGAAACTTACAATGAGGTGTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKIARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV

Homology

[Close]

BLAST of CmoCh17G005310 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-48
Identity = 102/173 (58.96%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      +  R+ K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA    AE  ELPEI+K  QEAW+KVDDKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           AG++SAIDRLPL+PG+LELVGIGYTGWF YKNL+F+PDREAL +K++ TY ++
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDI 170

[Close]

BLAST of CmoCh17G005310 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.2e-15
Identity = 37/109 (33.94%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 63  NVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAGVV 122
           ++M  A+GE      +++ +   +++  +Q  WDK +D+  +  L  +G VALWAS  ++
Sbjct: 51  SLMVKASGE------SSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLI 110

Query: 123 SAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           +AID+LP+I    ELVGI ++ WF Y+ L+F+PDR+ L + ++++  ++
Sbjct: 111 TAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADI 153

[Close]

BLAST of CmoCh17G005310 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 86  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGW 145
           E+I  ++E WD +++K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GYTGW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 146 FAYKNLIFRPDREALLQKLRETYNEV 172
           F Y+ L+F+  R+ L + +     ++
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKI 160

[Close]

BLAST of CmoCh17G005310 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 99  DDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDRE 158
           D  Y++        VAL+ ++ +VS+++ +PL P L+E+VG+GYT WF  + L+F+ +RE
Sbjct: 115 DKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNRE 174

Query: 159 ALLQKLRETYNEV 172
            L  K+ E   +V
Sbjct: 175 ELKTKVSEIKKQV 187

[Close]

BLAST of CmoCh17G005310 vs. ExPASy Swiss-Prot
Match: Q8YX97 (Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=valS PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.6e-05
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 107 LAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQK 164
           L ++G V L  +  V   +D +P +    E+VG+GY+ WF  +NL+  P R+  L K
Sbjct: 850 LVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFLAK 906

[Close]

BLAST of CmoCh17G005310 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.7e-84
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 171

[Close]

BLAST of CmoCh17G005310 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP PSTQIR WKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120
           ARNVMAMATGEVPAEVAT EMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNE+
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEI 171

[Close]

BLAST of CmoCh17G005310 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 156/171 (91.23%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPP P +QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120
           ARNVM MATGEVPAEVA  E+AE+PEI+KKVQEAWDKV+DKYAVSSLAVSGFVALWASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           VVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL+ETY+E+
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEI 171

[Close]

BLAST of CmoCh17G005310 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.8e-77
Identity = 158/172 (91.86%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPP PS QIR WKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVA  E+AE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           GVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL+ETY+E+
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEI 172

[Close]

BLAST of CmoCh17G005310 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.8e-77
Identity = 158/172 (91.86%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS SPSSTVPLPTLPSPP PS QIR WKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASA 120
           IARNVMAMATGEVPAEVA  E+AE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVALWASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           GVVSAIDRLPL+PGLLELVGIGYTGWFAYKNLIFRPDREALLQKL+ETY+E+
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEI 172

[Close]

BLAST of CmoCh17G005310 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-49
Identity = 102/173 (58.96%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      +  R+ K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA    AE  ELPEI+K  QEAW+KVDDKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           AG++SAIDRLPL+PG+LELVGIGYTGWF YKNL+F+PDREAL +K++ TY ++
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDI 170

[Close]

BLAST of CmoCh17G005310 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-49
Identity = 102/173 (58.96%), Postives = 129/173 (74.57%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP-----RQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKIA 66
           ++ ++SSSST++DS+AP       SAS  S + LPTLP      +  R+ K+TAYCRKI 
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPI----QSHTRAAKATAYCRKIV 61

Query: 67  RNVMAMAT---GEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWAS 126
           RNV+  AT   GE PA    AE  ELPEI+K  QEAW+KVDDKYA+ SLA +G VALW S
Sbjct: 62  RNVVTRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGS 121

Query: 127 AGVVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           AG++SAIDRLPL+PG+LELVGIGYTGWF YKNL+F+PDREAL +K++ TY ++
Sbjct: 122 AGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDI 170

[Close]

BLAST of CmoCh17G005310 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 6.5e-16
Identity = 37/109 (33.94%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 63  NVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAGVV 122
           ++M  A+GE      +++ +   +++  +Q  WDK +D+  +  L  +G VALWAS  ++
Sbjct: 51  SLMVKASGE------SSDSSTDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLI 110

Query: 123 SAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           +AID+LP+I    ELVGI ++ WF Y+ L+F+PDR+ L + ++++  ++
Sbjct: 111 TAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADI 153

[Close]

BLAST of CmoCh17G005310 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 37/109 (33.94%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 63  NVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAGVV 122
           ++M  A+GE      +++ +   +++  +Q  WDK +D+  +  L  +G VALWAS  ++
Sbjct: 51  SLMVKASGE------SSDSSTDLDVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLI 110

Query: 123 SAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEV 172
           +AID+LP+I    ELVGI ++ WF Y+ L+F+PDR+ L + ++++  ++
Sbjct: 111 TAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADI 152

[Close]

BLAST of CmoCh17G005310 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 86  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAGVVSAIDRLPLIPGLLELVGIGYTGW 145
           E+I  ++E WD +++K  V        VA+W S+ VV AI+ +PL+P ++ELVG+GYTGW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 146 FAYKNLIFRPDREALLQKLRETYNEV 172
           F Y+ L+F+  R+ L + +     ++
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKI 160

The following BLAST results are available for this feature:

BLAST of CmoCh17G005310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCA1	2.8e-48	58.96	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M812	9.2e-15	33.94	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04616	5.0e-13	38.37	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LDD3	1.3e-08	36.99	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8YX97	6.6e-05	35.09	Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=1...	[more]

BLAST of CmoCh17G005310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ET79	5.7e-84	100.00	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JPR9	1.5e-81	97.08	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A0A0KCB7	1.8e-77	91.23	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 S...	[more]
A0A5A7T8Q0	8.8e-77	91.86	Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CCA4	8.8e-77	91.86	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CmoCh17G005310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46820.1	2.0e-49	58.96	photosystem I P subunit	[more]
AT2G46820.2	2.0e-49	58.96	photosystem I P subunit	[more]
AT1G52220.1	6.5e-16	33.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	1.6e-14	33.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01150.1	3.6e-14	38.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 89..171 e-value: 5.0E-28 score: 96.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 1..171
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G005310.1	CmoCh17G005310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity