CmoCh17G003850 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G003850
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr17: 2400553 .. 2402983 (-)
RNA-Seq ExpressionCmoCh17G003850
SyntenyCmoCh17G003850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCACTTCACTGCTCGAAGCTCTGCGAACTCCATCATCCATGGCTGCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTCTTTCACCTTCTTTCGACTCCAATTCTCGCGCTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGAACCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCCTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGACATTCGACGCCAGAAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAGGCTTGGGCTAACACCGTTACTGAAGCCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGGTCGCTTCCTCTTCCTTTGATTTCACTTTTTGTTTTGGGGATTTTTGTTAAATTTGTTCTGCGATCCCTCTTTTTGTTACATTTGTTCATTGTTTTGATTGATTTGAGTTTAAATCGATGAGGAATTGCATAATTTTGTAATGTGCTTTGGAATTAGCTTTTTGTCCATTTACGAACAAAGAGAAAAATGCAGAGATTCATTACTTGCTGTTCAAAGTTGAATTGGAGGCATGAAAATCCGTCTTCTCTTGCCTTAATTTGAAGGAATGAAATGATAATTTGAAGAGCCTGCATAAACTTCTTGGGCTATTGTTTTCATCTTTAACAACTGTGGCTGCTTCAATTCAACCGTTCAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCCTTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGATTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGGTATGGAAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTCGACCAGATGTATGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTATGAGAAGTTTCGTAACTTCGGTATCGAGCCAGAAACGCGTACATTCAATATATTGATCGGTGCTTACGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCAACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTAGAAAGGAAGCAGGTGATCGATCACGCTCCTACTAACGAGTGACTCGGAAATGGAATAGAGTGAAAAATTGGTGCACGTTTGAGAAGTTGGGCGCTACACCATGCCTGTTCCACCAAGGGCTCTTGCTACATTGGATACTTCTGAGAAAATCAAATCCGCGCTTCCAGCCCTTCCAGTTCTGTGCCAAGTGTTTCACGCTATGATCATGTGAAATGATATGAACCAAGGCATCTCACGTTAACAAGAATCAAGTTTCATTTATTCAACAAAGGTTAAGGGTTGGAATATCTCACGGAAGGTTAAGGGTTTTCATTTAGAGGCTATATAAAGTCATGTACCTTATCTTTGTAAGAGAGACTTGGAAAATGTAGTAAAATGAGCAATTTGTGCTTTCCTTTAGCCAATGACTAAGCTTCTTTTGCAATTCTATGTAGTTTAGGTTGATGATCAATCTTGCTCGTGGAGTGATTCGAATCTCAAA

mRNA sequence

ATCCACTTCACTGCTCGAAGCTCTGCGAACTCCATCATCCATGGCTGCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTCTTTCACCTTCTTTCGACTCCAATTCTCGCGCTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGAACCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCCTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGACATTCGACGCCAGAAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAGGCTTGGGCTAACACCGTTACTGAAGCCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCCTTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGATTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGGTATGGAAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTCGACCAGATGTATGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTATGAGAAGTTTCGTAACTTCGGTATCGAGCCAGAAACGCGTACATTCAATATATTGATCGGTGCTTACGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCAACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTAGAAAGGAAGCAGGTGATCGATCACGCTCCTACTAACGAGTGACTCGGAAATGGAATAGAGTGAAAAATTGGTGCACGTTTGAGAAGTTGGGCGCTACACCATGCCTGTTCCACCAAGGGCTCTTGCTACATTGGATACTTCTGAGAAAATCAAATCCGCGCTTCCAGCCCTTCCAGTTCTGTGCCAAGTGTTTCACGCTATGATCATGTGAAATGATATGAACCAAGGCATCTCACGTTAACAAGAATCAAGTTTCATTTATTCAACAAAGGTTAAGGGTTGGAATATCTCACGGAAGGTTAAGGGTTTTCATTTAGAGGCTATATAAAGTCATGTACCTTATCTTTGTAAGAGAGACTTGGAAAATGTAGTAAAATGAGCAATTTGTGCTTTCCTTTAGCCAATGACTAAGCTTCTTTTGCAATTCTATGTAGTTTAGGTTGATGATCAATCTTGCTCGTGGAGTGATTCGAATCTCAAA

Coding sequence (CDS)

ATGGCTGCCTTCTCCTTCTCCTCTTCGCTCCTTCCTTCATCAGTTTCTTTCGATCATGGCTCCTCTTCCTTCTTCCCCATCCTTCTTTCACCTTCTTTCGACTCCAATTCTCGCGCTGTTCGCTGTACATTTGCAGCCCCCGCTAGAAAATCGCCTCCTCCTCCTTCTTCTTCTTCTTCTTCCTCACCGGATAAGAAGAGGCACTGGAAGCAAGGGGAATTTCCAGGTATTACGGAGACATCCGCCCCCAGGATGAACCCCGCTAGAAAATCACCTCCTCCTTCTTCTTCCTCGCCGGTTAAGAAGAAGCATTGGAAACAAGGGGAATTTCCAGGCGTTACAGAGACATTCGACGCCAGAAAGACCCCTCTCAAGAATGTCAAGAAGAAATTAGATCGCAAAATGAACGCCAAGGCTTGGGCTAACACCGTTACTGAAGCCTTGTCGGAACATATCACGAACAAACGGTGGATTCAAGCTCTTGAGGTGTTTGAAATGCTCCGCAAACAGCCATTTTATGAACCAAAAGAAGGAACTTACATGAAGCTGCTTGTTCTACTTGGAAGATCTGGCCAACCACAGCGTGCCCGTCTGCTTTTTGACACAATGGTGGAAGAAAAATGTGAACCCACCACTGAACTTTACACTGCTTTGCTTGCTGCTTATTGTCGTAACAATCTCATTGATGATGCATTTTCCCTTCTTAATCTCATGAAAACCCTCCCTTGCTGCCAGCCTGATATCTACACTTATAGTATATTAATCAAGGCTTGTGTCGATTCTTCTCGCTTTGAATTAGTTGAATCTTTGTACGAGGAAATGGCCGAACGATTGATAACTCCGAACACGGTTACTCAGAATATAGTCTTAAGTGGGTATGGAAAGATAGGGAAGTATGACCAAATGGAGAAAGTTCTTTTAGGAATGCTTGAGAGCACAACTTGTCGACCAGATGTATGGACAATGAACATAATTCTTAGTGTGTTTGGTAACAAGGGTCAGATTGAAATGATGGAAAGATGGTATGAGAAGTTTCGTAACTTCGGTATCGAGCCAGAAACGCGTACATTCAATATATTGATCGGTGCTTACGGGAAGAAAAGGATGTATGATAAAATGTCTTCTGTGATGGAGTATATGCGCAAACTGCAGTTTCCTTGGACGACCTCAACATACAACAACGTTATTGAAGCTTTTGCAGATGTGGGAGATGCAAAGAATATGGAGTACACCTTCACGCAGATGCGTGCTGAGGGCATGAAAGCAGACACCAAGACATTCTGTTGCCTTATAAATGGATATTCCAATGCAGGTCTCTTCCATAAGGTGATTGGCTCAGTTAAGTTGGCAGGAAAGTGTGAAATTCCAGAGAATACCTCATTTTATAATGCTGTTATATCTGCTTGTGCAAAGGCTGAGGATCTGATGGAAATGGATAGAGTGTTTAAGCGAATGAAAGATAAACATTGTCAGCCAGATAGCAAAACATATTCTATCATGATAGAAGCATATGAAAAGGAGGCCATGAATGACAGAGTTCATTACTTGGAACTAGAAAGGAAGCAGGTGATCGATCACGCTCCTACTAACGAGTGA

Protein sequence

MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSSSSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTETFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE
Homology
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BLAST of CmoCh17G003850 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)

HSP 1 Score: 681.8 bits (1758), Expect = 6.2e-195
Identity = 336/470 (71.49%), Postives = 398/470 (84.68%), Query Frame = 0 

Query: 56  SSSSSSSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTE 115
           S  SS  P+ KR ++  +  GI       +  A KS P    S  KK+ WK GEFPG+TE
Sbjct: 11  SLCSSRIPEGKRRFRHRDV-GIVRC----VLAASKSSP---GSVTKKRLWKDGEFPGITE 70

Query: 116 TFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEP 175
             + R+TP+KNVKKKLDR+  A  W NTVTE LS+ I  K+W+QALEVF+MLR+Q FY+P
Sbjct: 71  PVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP 130

Query: 176 KEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLL 235
           KEGTYMKLLVLLG+SGQP RA+ LFD M+EE  EPT ELYTALLAAY R+NLIDDAFS+L
Sbjct: 131 KEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSIL 190

Query: 236 NLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGK 295
           + MK+ P CQPD++TYS L+KACVD+S+F+LV+SLY+EM ERLITPNTVTQNIVLSGYG+
Sbjct: 191 DKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGR 250

Query: 296 IGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR 355
           +G++DQMEKVL  ML ST C+PDVWTMNIILSVFGN G+I+MME WYEKFRNFGIEPETR
Sbjct: 251 VGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETR 310

Query: 356 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQM 415
           TFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IEAFADVGDAKNME TF QM
Sbjct: 311 TFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 370

Query: 416 RAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDL 475
           R+EGMKADTKTFCCLINGY+NAGLFHKVI SV+LA K EIPENT+FYNAVISACAKA+DL
Sbjct: 371 RSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDL 430

Query: 476 MEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVID 526
           +EM+RV+ RMK++ C  DS+T+ IM+EAYEKE MND+++YLE ER++++D
Sbjct: 431 IEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMD 472

[Close]
BLAST of CmoCh17G003850 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 327.0 bits (837), Expect = 3.9e-88
Identity = 171/397 (43.07%), Postives = 238/397 (59.95%), Query Frame = 0 

Query: 120 RKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGT 179
           R+   K++ +K  +K + K    TV E+L E IT  RW  A++VFE+LR+Q +Y+P  G 
Sbjct: 95  RREATKSIIEK--KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGI 154

Query: 180 YMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMK 239
           Y+KL+V+LG+  QP++A  LF  M+ E C    E+YTAL++AY R+   D AF+LL  MK
Sbjct: 155 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 214

Query: 240 TLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKY 299
           +   CQPD++TYSILIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   +
Sbjct: 215 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMF 274

Query: 300 DQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNI 359
            +ME  L+ ML    C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNI
Sbjct: 275 VEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNI 334

Query: 360 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEG 419
           L+ +YGK   Y KMS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M++E 
Sbjct: 335 LLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSER 394

Query: 420 MKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMD 479
           +     T C L+  Y  A    K+ G ++     +I  +  F+N ++ A  + E   EM 
Sbjct: 395 IFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMK 454

Query: 480 RVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL 517
            V + M+ K  +PD  TY  M++AY    M   V  L
Sbjct: 455 GVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

[Close]
BLAST of CmoCh17G003850 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.6e-86
Identity = 160/401 (39.90%), Postives = 249/401 (62.09%), Query Frame = 0 

Query: 124 LKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTYMKL 183
           +K +++K + +     W   V EAL E I   RW  AL++F +LRKQ +YEP+  TY KL
Sbjct: 41  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 100

Query: 184 LVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKTLPC 243
             +LG   QP +A LLF+ M+ E  +PT ++YT+L++ Y ++ L+D AFS L  MK++  
Sbjct: 101 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 160

Query: 244 CQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQME 303
           C+PD++T+++LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G +++ME
Sbjct: 161 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 220

Query: 304 KVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGA 363
            VL  M+E     PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 221 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 280

Query: 364 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKAD 423
           +GK  MY KM SVM++M K  F  TT TYN VIE F   G  + M+  F +M+ +G+K +
Sbjct: 281 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 340

Query: 424 TKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFK 483
           + T+C L+N YS AGL  K+   ++     ++  +T F+N +I+A  +A DL  M  ++ 
Sbjct: 341 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 400

Query: 484 RMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVI 525
           +M+++ C+PD  T++ MI+ Y    + D V  LE   KQ+I
Sbjct: 401 QMEERKCKPDKITFATMIKTYTAHGIFDAVQELE---KQMI 438

[Close]
BLAST of CmoCh17G003850 vs. ExPASy Swiss-Prot
Match: A7LN87 (Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4577 GN=PPR5 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.0e-44
Identity = 109/353 (30.88%), Postives = 177/353 (50.14%), Query Frame = 0 

Query: 157 WIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYT 216
           W+Q L+VF  ++KQ +Y    G Y KL+ ++GR GQ + A  LF  M    C+P T +Y 
Sbjct: 104 WLQCLDVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYN 163

Query: 217 ALLAAYC----RNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYE 276
           +L+ A+     +   +  A      MK +  CQP I TY+IL++A   +   + V+ L++
Sbjct: 164 SLIGAHLHSRDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFK 223

Query: 277 EMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNK 336
           ++ E +++P+  T N VL  YGK G   +ME VL+ M +ST CRPDV T NI++  +G K
Sbjct: 224 DLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRM-KSTQCRPDVITFNILIDSYGRK 283

Query: 337 GQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTY 396
              + ME+ ++        P   TFN +I  YG+ R+ +K  SV+E M +L F     T 
Sbjct: 284 QTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLREKAESVVEKMEELGFKPNYVTQ 343

Query: 397 NNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLA-G 456
             +I  +A           F ++     K    +   ++  Y   GL  +    +  A  
Sbjct: 344 ECLIIMYAHCDCVSKARQVFDELVTSQTKVHLSSLNSMLEAYCMNGLHTEADRLLDTALQ 403

Query: 457 KCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAY 505
           +C +P N S Y  +  A  KA D + + ++ KRM  +   P+ K +   +EA+
Sbjct: 404 QCVVP-NGSTYKLLYKAYTKANDKLLVQKLLKRMNKQGIVPNKKFFLDALEAF 454

[Close]
BLAST of CmoCh17G003850 vs. ExPASy Swiss-Prot
Match: Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 9.4e-42
Identity = 98/353 (27.76%), Postives = 171/353 (48.44%), Query Frame = 0 

Query: 156 RWIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELY 215
           +W+Q LEVF  ++KQ +Y P  G Y KL+ ++G+ GQ + A  LF  M    C P   +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 216 TALLAAYC----RNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLY 275
            AL+ A+     +   ++     L+ MK +  CQP++ TY+IL++A   S + + V +L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 276 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 335
           +++    ++P+  T N V+  YGK G   +ME VL  M  S  C+PD+ T N+++  +G 
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 291

Query: 336 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 395
           K + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 292 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 351

Query: 396 YNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAG 455
           Y  +I  +   G        F ++          T   ++  Y   GL+ +       A 
Sbjct: 352 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 411

Query: 456 KCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAY 505
              +  + S Y  +  A  KA+   ++  + K+M+     P+ + +   +E +
Sbjct: 412 AFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

[Close]
BLAST of CmoCh17G003850 vs. ExPASy TrEMBL
Match: A0A6J1H324 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460035 PE=4 SV=1)

HSP 1 Score: 1064.3 bits (2751), Expect = 1.7e-307
Identity = 531/531 (100.00%), Postives = 531/531 (100.00%), Query Frame = 0 

Query: 1   MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSS 60
           MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSS
Sbjct: 1   MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSS 60

Query: 61  SSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTETFDAR 120
           SSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTETFDAR
Sbjct: 61  SSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTETFDAR 120

Query: 121 KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY 180
           KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY
Sbjct: 121 KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY 180

Query: 181 MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT 240
           MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT
Sbjct: 181 MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT 240

Query: 241 LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD 300
           LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD
Sbjct: 241 LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD 300

Query: 301 QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 360
           QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL
Sbjct: 301 QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 360

Query: 361 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 420
           IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM
Sbjct: 361 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 420

Query: 421 KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR 480
           KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR
Sbjct: 421 KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR 480

Query: 481 VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 532
           VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE
Sbjct: 481 VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 531

[Close]
BLAST of CmoCh17G003850 vs. ExPASy TrEMBL
Match: A0A6J1L0G6 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499248 PE=4 SV=1)

HSP 1 Score: 1035.4 bits (2676), Expect = 8.2e-299
Identity = 519/531 (97.74%), Postives = 522/531 (98.31%), Query Frame = 0 

Query: 3   AFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPP--PSSSSS 62
           +FSFSSSLLPSSVSFDHGSSSFFPILLS SFDSNSR VRCTFAAPARKSPPP   SSSSS
Sbjct: 5   SFSFSSSLLPSSVSFDHGSSSFFPILLSSSFDSNSRVVRCTFAAPARKSPPPSSSSSSSS 64

Query: 63  SSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTETFDAR 122
           SSPDKKRHWKQGEFPGI ETSAPRM PARKSPPP SSSPVKKKHWKQGEFPGVTETFDAR
Sbjct: 65  SSPDKKRHWKQGEFPGIIETSAPRMTPARKSPPPFSSSPVKKKHWKQGEFPGVTETFDAR 124

Query: 123 KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY 182
           KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY
Sbjct: 125 KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY 184

Query: 183 MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT 242
           MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFS+LNLMKT
Sbjct: 185 MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSILNLMKT 244

Query: 243 LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD 302
           LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD
Sbjct: 245 LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD 304

Query: 303 QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 362
           QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL
Sbjct: 305 QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 364

Query: 363 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 422
           IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM
Sbjct: 365 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 424

Query: 423 KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR 482
           KADTKTFCCLINGYSNAGLFHKVI SVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR
Sbjct: 425 KADTKTFCCLINGYSNAGLFHKVISSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR 484

Query: 483 VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 532
           VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL+LERKQVIDHAPTNE
Sbjct: 485 VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLKLERKQVIDHAPTNE 535

[Close]
BLAST of CmoCh17G003850 vs. ExPASy TrEMBL
Match: A0A6J1H6E5 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460035 PE=4 SV=1)

HSP 1 Score: 978.4 bits (2528), Expect = 1.2e-281
Identity = 497/531 (93.60%), Postives = 497/531 (93.60%), Query Frame = 0 

Query: 1   MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSS 60
           MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSS
Sbjct: 1   MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDSNSRAVRCTFAAPARKSPPPPSSSSS 60

Query: 61  SSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTETFDAR 120
                                             SSSSPVKKKHWKQGEFPGVTETFDAR
Sbjct: 61  ----------------------------------SSSSPVKKKHWKQGEFPGVTETFDAR 120

Query: 121 KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY 180
           KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY
Sbjct: 121 KTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTY 180

Query: 181 MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT 240
           MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT
Sbjct: 181 MKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKT 240

Query: 241 LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD 300
           LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD
Sbjct: 241 LPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYD 300

Query: 301 QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 360
           QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL
Sbjct: 301 QMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNIL 360

Query: 361 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 420
           IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM
Sbjct: 361 IGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGM 420

Query: 421 KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR 480
           KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR
Sbjct: 421 KADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDR 480

Query: 481 VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 532
           VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE
Sbjct: 481 VFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 497

[Close]
BLAST of CmoCh17G003850 vs. ExPASy TrEMBL
Match: A0A1S3C7L9 (pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497754 PE=4 SV=1)

HSP 1 Score: 863.6 bits (2230), Expect = 4.3e-247
Identity = 443/536 (82.65%), Postives = 468/536 (87.31%), Query Frame = 0 

Query: 1   MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDS-----NSRAVRCTFAAPARKSPPPP 60
           MA+FSFSSSLLPSSVSFDH S+  FPI +S S  S     NSR VRC FAAP RKSP P 
Sbjct: 1   MASFSFSSSLLPSSVSFDHVSTFLFPIFVSSSSSSSSSHPNSRIVRCAFAAPTRKSPVP- 60

Query: 61  SSSSSSSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTE 120
             S+SSSP KKRHWKQGEFPGITET      P R                          
Sbjct: 61  --STSSSPAKKRHWKQGEFPGITET------PTR-------------------------- 120

Query: 121 TFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEP 180
               RKTPLKNVKKKLDRK NAKAWANTVTEALS+HI+NKRW++ALEVFEMLR+QPFYEP
Sbjct: 121 ----RKTPLKNVKKKLDRKNNAKAWANTVTEALSDHISNKRWLEALEVFEMLREQPFYEP 180

Query: 181 KEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLL 240
           KEGTYMKLLVLLGRSGQP RARLLFDTM++E+CEPT+ELYTALLAAYCRNNLIDDAFS L
Sbjct: 181 KEGTYMKLLVLLGRSGQPHRARLLFDTMLQERCEPTSELYTALLAAYCRNNLIDDAFSTL 240

Query: 241 NLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGK 300
           NLMKTLP CQPD+YTYSILIKACVD+SRFE+VESLYEEMA+RLITPNTVTQNIVLSGYGK
Sbjct: 241 NLMKTLPGCQPDVYTYSILIKACVDASRFEIVESLYEEMAQRLITPNTVTQNIVLSGYGK 300

Query: 301 IGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR 360
           IGKYDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR
Sbjct: 301 IGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR 360

Query: 361 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQM 420
           TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QM
Sbjct: 361 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQM 420

Query: 421 RAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDL 480
           RAEGM+ADTKTFCCLINGY+NAGLFHKVI SVKLAGK EIPENTSFYNAVISACAKAEDL
Sbjct: 421 RAEGMRADTKTFCCLINGYANAGLFHKVISSVKLAGKLEIPENTSFYNAVISACAKAEDL 480

Query: 481 MEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 532
           MEMDRVFKRMKDKHCQPDSKTY+IM+EAY KE MNDRVHYLELE+K+VID+A  NE
Sbjct: 481 MEMDRVFKRMKDKHCQPDSKTYNIMMEAYGKEGMNDRVHYLELEKKEVIDYASNNE 497

[Close]
BLAST of CmoCh17G003850 vs. ExPASy TrEMBL
Match: A0A0A0K7C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1)

HSP 1 Score: 862.8 bits (2228), Expect = 7.3e-247
Identity = 443/535 (82.80%), Postives = 462/535 (86.36%), Query Frame = 0 

Query: 1   MAAFSFSSSLLPSSVSFDHGSSSFFPILLSPSFDS----NSRAVRCTFAAPARKSPPPPS 60
           MA+FSFSSSLLPSSVSFDH S+  FPI +S S  S    NSR VRC FAAP RKSP P  
Sbjct: 1   MASFSFSSSLLPSSVSFDHVSTFLFPIFVSSSCSSSSHPNSRIVRCAFAAPTRKSPVP-- 60

Query: 61  SSSSSSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTET 120
            S+SSSP KKRHWKQGEFPG TETS                                   
Sbjct: 61  -STSSSPAKKRHWKQGEFPGTTETST---------------------------------- 120

Query: 121 FDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPK 180
              R+ PLK VKKKLDRK NAKAWANTVTEALS+HITNKRW+QALEVFEMLR+QPFYEPK
Sbjct: 121 --RRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPK 180

Query: 181 EGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLN 240
           EGTYMKLLVLLGRSGQP RARLLFDTMV+E+CEPT ELYTALLAAYCRNNLIDDAFS LN
Sbjct: 181 EGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLN 240

Query: 241 LMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKI 300
           LMKTLP CQPD+YTYSILIKACVD SRFE+VESLYEEMAERLITPNTVTQNIVLSGYGKI
Sbjct: 241 LMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKI 300

Query: 301 GKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRT 360
           GKYDQMEKVL+GMLESTTCRPDVWTMNIILSVFGNKG IEMMERWYEKFRNFGIEPETRT
Sbjct: 301 GKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRT 360

Query: 361 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMR 420
           FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTF QMR
Sbjct: 361 FNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMR 420

Query: 421 AEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLM 480
           AEGM+ADTKTFCCLINGY+NAGLFHKVIGSVKLAGK EIPENTSFYNAVISACAKAEDLM
Sbjct: 421 AEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLM 480

Query: 481 EMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVIDHAPTNE 532
           EMDRVFKRMKDKHCQPD+KTYSIM+EAY KE MNDRVHYLELE+KQVID+A  NE
Sbjct: 481 EMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQVIDNASNNE 496

[Close]
BLAST of CmoCh17G003850 vs. TAIR 10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 681.8 bits (1758), Expect = 4.4e-196
Identity = 336/470 (71.49%), Postives = 398/470 (84.68%), Query Frame = 0 

Query: 56  SSSSSSSPDKKRHWKQGEFPGITETSAPRMNPARKSPPPSSSSPVKKKHWKQGEFPGVTE 115
           S  SS  P+ KR ++  +  GI       +  A KS P    S  KK+ WK GEFPG+TE
Sbjct: 11  SLCSSRIPEGKRRFRHRDV-GIVRC----VLAASKSSP---GSVTKKRLWKDGEFPGITE 70

Query: 116 TFDARKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEP 175
             + R+TP+KNVKKKLDR+  A  W NTVTE LS+ I  K+W+QALEVF+MLR+Q FY+P
Sbjct: 71  PVNQRRTPIKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP 130

Query: 176 KEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLL 235
           KEGTYMKLLVLLG+SGQP RA+ LFD M+EE  EPT ELYTALLAAY R+NLIDDAFS+L
Sbjct: 131 KEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSIL 190

Query: 236 NLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGK 295
           + MK+ P CQPD++TYS L+KACVD+S+F+LV+SLY+EM ERLITPNTVTQNIVLSGYG+
Sbjct: 191 DKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGR 250

Query: 296 IGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETR 355
           +G++DQMEKVL  ML ST C+PDVWTMNIILSVFGN G+I+MME WYEKFRNFGIEPETR
Sbjct: 251 VGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETR 310

Query: 356 TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQM 415
           TFNILIG+YGKKRMYDKMSSVMEYMRKL+FPWTTSTYNN+IEAFADVGDAKNME TF QM
Sbjct: 311 TFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQM 370

Query: 416 RAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDL 475
           R+EGMKADTKTFCCLINGY+NAGLFHKVI SV+LA K EIPENT+FYNAVISACAKA+DL
Sbjct: 371 RSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDL 430

Query: 476 MEMDRVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVID 526
           +EM+RV+ RMK++ C  DS+T+ IM+EAYEKE MND+++YLE ER++++D
Sbjct: 431 IEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQERQKLMD 472

[Close]
BLAST of CmoCh17G003850 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 327.0 bits (837), Expect = 2.8e-89
Identity = 171/397 (43.07%), Postives = 238/397 (59.95%), Query Frame = 0 

Query: 120 RKTPLKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGT 179
           R+   K++ +K  +K + K    TV E+L E IT  RW  A++VFE+LR+Q +Y+P  G 
Sbjct: 95  RREATKSIIEK--KKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQLWYKPNVGI 154

Query: 180 YMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMK 239
           Y+KL+V+LG+  QP++A  LF  M+ E C    E+YTAL++AY R+   D AF+LL  MK
Sbjct: 155 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 214

Query: 240 TLPCCQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKY 299
           +   CQPD++TYSILIK+ +    F+ V+ L  +M  + I PNT+T N ++  YGK   +
Sbjct: 215 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMF 274

Query: 300 DQMEKVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNI 359
            +ME  L+ ML    C+PD WTMN  L  FG  GQIEMME  YEKF++ GIEP  RTFNI
Sbjct: 275 VEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNI 334

Query: 360 LIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEG 419
           L+ +YGK   Y KMS+VMEYM+K  + WT  TYN VI+AF   GD K MEY F  M++E 
Sbjct: 335 LLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSER 394

Query: 420 MKADTKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMD 479
           +     T C L+  Y  A    K+ G ++     +I  +  F+N ++ A  + E   EM 
Sbjct: 395 IFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYGRMEKFAEMK 454

Query: 480 RVFKRMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYL 517
            V + M+ K  +PD  TY  M++AY    M   V  L
Sbjct: 455 GVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

[Close]
BLAST of CmoCh17G003850 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 321.6 bits (823), Expect = 1.2e-87
Identity = 160/401 (39.90%), Postives = 249/401 (62.09%), Query Frame = 0 

Query: 124 LKNVKKKLDRKMNAKAWANTVTEALSEHITNKRWIQALEVFEMLRKQPFYEPKEGTYMKL 183
           +K +++K + +     W   V EAL E I   RW  AL++F +LRKQ +YEP+  TY KL
Sbjct: 91  VKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKL 150

Query: 184 LVLLGRSGQPQRARLLFDTMVEEKCEPTTELYTALLAAYCRNNLIDDAFSLLNLMKTLPC 243
             +LG   QP +A LLF+ M+ E  +PT ++YT+L++ Y ++ L+D AFS L  MK++  
Sbjct: 151 FKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSD 210

Query: 244 CQPDIYTYSILIKACVDSSRFELVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQME 303
           C+PD++T+++LI  C    RF+LV+S+  EM+   +  +TVT N ++ GYGK G +++ME
Sbjct: 211 CKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEME 270

Query: 304 KVLLGMLESTTCRPDVWTMNIILSVFGNKGQIEMMERWYEKFRNFGIEPETRTFNILIGA 363
            VL  M+E     PDV T+N I+  +GN   +  ME WY +F+  G++P+  TFNILI +
Sbjct: 271 SVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILS 330

Query: 364 YGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFTQMRAEGMKAD 423
           +GK  MY KM SVM++M K  F  TT TYN VIE F   G  + M+  F +M+ +G+K +
Sbjct: 331 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 390

Query: 424 TKTFCCLINGYSNAGLFHKVIGSVKLAGKCEIPENTSFYNAVISACAKAEDLMEMDRVFK 483
           + T+C L+N YS AGL  K+   ++     ++  +T F+N +I+A  +A DL  M  ++ 
Sbjct: 391 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 450

Query: 484 RMKDKHCQPDSKTYSIMIEAYEKEAMNDRVHYLELERKQVI 525
           +M+++ C+PD  T++ MI+ Y    + D V  LE   KQ+I
Sbjct: 451 QMEERKCKPDKITFATMIKTYTAHGIFDAVQELE---KQMI 488

[Close]
BLAST of CmoCh17G003850 vs. TAIR 10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 6.7e-43
Identity = 98/353 (27.76%), Postives = 171/353 (48.44%), Query Frame = 0 

Query: 156 RWIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELY 215
           +W+Q LEVF  ++KQ +Y P  G Y KL+ ++G+ GQ + A  LF  M    C P   +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 216 TALLAAYC----RNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLY 275
            AL+ A+     +   ++     L+ MK +  CQP++ TY+IL++A   S + + V +L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 276 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 335
           +++    ++P+  T N V+  YGK G   +ME VL  M  S  C+PD+ T N+++  +G 
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 291

Query: 336 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 395
           K + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 292 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 351

Query: 396 YNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAG 455
           Y  +I  +   G        F ++          T   ++  Y   GL+ +       A 
Sbjct: 352 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 411

Query: 456 KCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAY 505
              +  + S Y  +  A  KA+   ++  + K+M+     P+ + +   +E +
Sbjct: 412 AFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

[Close]
BLAST of CmoCh17G003850 vs. TAIR 10
Match: AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 172.9 bits (437), Expect = 6.7e-43
Identity = 98/353 (27.76%), Postives = 171/353 (48.44%), Query Frame = 0 

Query: 156 RWIQALEVFEMLRKQPFYEPKEGTYMKLLVLLGRSGQPQRARLLFDTMVEEKCEPTTELY 215
           +W+Q LEVF  ++KQ +Y P  G Y KL+ ++G+ GQ + A  LF  M    C P   +Y
Sbjct: 112 KWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVY 171

Query: 216 TALLAAYC----RNNLIDDAFSLLNLMKTLPCCQPDIYTYSILIKACVDSSRFELVESLY 275
            AL+ A+     +   ++     L+ MK +  CQP++ TY+IL++A   S + + V +L+
Sbjct: 172 NALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALF 231

Query: 276 EEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLLGMLESTTCRPDVWTMNIILSVFGN 335
           +++    ++P+  T N V+  YGK G   +ME VL  M  S  C+PD+ T N+++  +G 
Sbjct: 232 KDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITFNVLIDSYGK 291

Query: 336 KGQIEMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTST 395
           K + E ME+ ++       +P   TFN +I  YGK RM DK   V + M  + +  +  T
Sbjct: 292 KQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYIPSFIT 351

Query: 396 YNNVIEAFADVGDAKNMEYTFTQMRAEGMKADTKTFCCLINGYSNAGLFHKVIGSVKLAG 455
           Y  +I  +   G        F ++          T   ++  Y   GL+ +       A 
Sbjct: 352 YECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNAS 411

Query: 456 KCEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDSKTYSIMIEAY 505
              +  + S Y  +  A  KA+   ++  + K+M+     P+ + +   +E +
Sbjct: 412 AFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVF 463

The following BLAST results are available for this feature:
BLAST of CmoCh17G003850 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SQU66.2e-19571.49Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop... [more]
Q9FKC33.9e-8843.07Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Q9SCP41.6e-8639.90Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX... [more]
A7LN872.0e-4430.88Pentatricopeptide repeat-containing protein PPR5, chloroplastic OS=Zea mays OX=4... [more]
Q9SV969.4e-4227.76Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop... [more]
BLAST of CmoCh17G003850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1H3241.7e-307100.00pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isofor... [more]
A0A6J1L0G68.2e-29997.74pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like OS=Cuc... [more]
A0A6J1H6E51.2e-28193.60pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isofor... [more]
A0A1S3C7L94.3e-24782.65pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Cucumis ... [more]
A0A0A0K7C87.3e-24782.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000680 PE=4 SV=1[more]
BLAST of CmoCh17G003850 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06430.14.4e-19671.49Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G48730.12.8e-8943.07Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G53170.11.2e-8739.90Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.16.7e-4327.76Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.26.7e-4327.76Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 141..311
e-value: 1.9E-38
score: 134.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 384..446
e-value: 2.2E-9
score: 39.1
coord: 312..383
e-value: 4.1E-14
score: 54.5
coord: 447..523
e-value: 1.3E-13
score: 52.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 287..311
e-value: 0.079
score: 13.2
coord: 179..208
e-value: 0.51
score: 10.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 391..423
e-value: 0.0013
score: 16.8
coord: 179..211
e-value: 3.7E-4
score: 18.5
coord: 462..494
e-value: 5.0E-8
score: 30.6
coord: 249..282
e-value: 1.8E-5
score: 22.6
coord: 284..318
e-value: 1.4E-4
score: 19.8
coord: 321..352
e-value: 0.0022
score: 16.0
coord: 356..384
e-value: 4.6E-5
score: 21.3
coord: 214..247
e-value: 3.5E-6
score: 24.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 387..434
e-value: 3.9E-4
score: 20.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 317..364
e-value: 7.7E-8
score: 32.4
coord: 210..259
e-value: 8.4E-13
score: 48.3
coord: 458..504
e-value: 3.2E-13
score: 49.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 458..492
score: 11.23539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 9.656963
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 176..210
score: 9.262356
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 211..245
score: 8.977363
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 9.13082
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 8.549871
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 247..281
score: 10.917512
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..317
score: 8.834866
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..117
NoneNo IPR availablePANTHERPTHR47932:SF4OS03G0309800 PROTEINcoord: 49..525
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 49..525

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G003850.1CmoCh17G003850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009553 embryo sac development
biological_process GO:0009555 pollen development
biological_process GO:0048868 pollen tube development
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0019843 rRNA binding