CmoCh17G001220 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G001220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr17: 694373 .. 696447 (+)
RNA-Seq ExpressionCmoCh17G001220
SyntenyCmoCh17G001220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTTTGAATCTCCGGAGGAAGAGGACCACTGAATCTATTGTGGTCCAAGTCAATAGCAGTAAGGTTCACCAGGTTACACAACTGGGTCGGAAAGCCACCGGTAAAGCGGTTAGCAACGAGACGAATCTGCGTCAACGGTTTGCAGTTCAAGATCCCGGTAGGTATGTTTCCATAAAGGTCATTCGACTCCAAGTTCAAGATGGAGAGGTTAGAACGATGACAGAGATGGGGAGGTATTCGTCCTGTCAAGAAGTTGTCTGAAAAGTCGATATCCGATAGGTAGCTATATCGACCGAGTCCTTTCGGAATGGGACCGCTCAAACTGTTGCTGAAAAGCTGCAATTGAAACAATGCAGGCATATACTGAAACCCGAACGGAACAGGGCCGGTGAGGGCGTTGATTGAAAGATCAAGTTTAGTCAAGTTAGTCAAGCTACTAAGTTCATTTGGTATAACACCAATCAGCTTATTTTGAAAGAGGTAAAGTAATTGGAGACCTTTTACGTTACCGAGCTCTTTCGGTATCTCACCGGTCAAATAATTCTCGGAGAAGTCTATCTCCGTTGCCAAAGAAAGGTTCCCGATCTCCCTGGGAATAGTTCCGTTCAATGCGGTTCGGTATATATACAAATACTTCAAAGAGATTAGGTTCCCAAACTCGTTGGGTATAGGTCCACCAAGATTGTTCTCATACAGAGCAAGCATAGTTAAACTTGTACAATTCCCAAGCTCTTTTGGTAGAACGCCAGAAAGCTGATTCTCCCACAGAATCAAGTGAGTCAAGTTTGTAAGCATGCCAAGCTCCTTTGGTAACTCCCCTTCTAACTGGTTTTGAGCAAGCCCAAGTATTTCCAAGTTCTCACACCCACCTATTTCACCCGGTAAGCTCCCCGAGATCGCGTTTTGCCCTGCTCTAAACGTTCTCAACCTCTTCAGATTCCCAAAAGAACGAGGCAACGAACCCGTGATATTGTTCGTATACGCAACTAACTCATACAACGATTTCAAGTTTCCCATCTCTTCAGGAAAAGAACCACGGATTCGATTATTACATATATTCAACGTAACCAAACAAGTGAGTCGTCCCAATTCATATGGAACTTCACCATCAAATTTATTGTTGTTCAAAGCAAGATATTCCAACTCCATACAATTTCCAATCTCTTTCGGTATTCTTCCACTGAATTCATTCCAGGAAAGATTGAGATAAGTCAAGTGGATTAAACTACCAACGCTCGAGCTTAAAGGACCTGACAGGTTCTTTAAGCTCAAGTCAAGGGACAAAACCACTCCTTCCTCACCACAACTACACCTTACACCACTCCATTCACATGGCGTTTCGTCGCTCCAATTCCAATTTCTTAACCAACCAAGCGGATCAGAAACAGCGTTTTTCAAGTCTAATAGAAAATGACCTTCTGAGTTCAACCCATGTGAGATGCTAAACAGAAAACCCAGAAGCACCAAACTCCCAACCACTTTCGAACCCCAAACCGACATGACTTCAACCTCTTAACTATCATCCCACCAAACACTTCAGTAGCTGCAAACGATTCAGACATCAAACACTAATACAATGTTGACAATCCTTCAAATCTCATTACATTCTTAAAGACAACAAGGGAATCCAAACAAAAATTCCCCCAGCTTTTAAGTCATCCGAACAAACAAACATCAGACAAGTCTTGTCACAGGAATCTATGAAAACCATATACGACAAACTGCTAAAATCTATGAAAAACCCATAGAAATGAGTGAGGAAAAAGAAAAGTACCTGTGGACTAGCGATTAAAATCATCATCAGCCGCCATAAATGAAGCAATAAAAGCATGAAATCCACCACTGTCTCTGTTACAATCTGTCTCTGTTACAATCAGGTAGAACAGCGAAACAGAGGCGAAACTTTCAAGGGCAAGGTTTGGCGCCTTTATTTGCTGCTTTTTGGAACCCCAGAAGCTGGCGATTGCGAAAGAATCGCAAAATCAACGCAGAGATTTGAAGTATTTTACGGAGTTAATGAAAACCCATCAAAGAATCAAGAACAGAGACATGAAGTTGAGATCCTTTAG

mRNA sequence

ATGGCAATTTTGAATCTCCGGAGGAAGAGGACCACTGAATCTATTGTGGTCCAAGTCAATAGCAGTAAGGTTCACCAGGTTACACAACTGGGTCGGAAAGCCACCGGTAAAGCGGTTAGCAACGAGACGAATCTGCGTCAACGGTTTGCAGTTCAAGATCCCGGTAGGTATGTTTCCATAAAGGTCATTCGACTCCAAGTTCAAGATGGAGAGGTTAGAACGATGACAGAGATGGGGAGATTCCCAAAAGAACGAGGCAACGAACCCGTGATATTGTTCGTATACGCAACTAACTCATACAACGATTTCAAGTTTCCCATCTCTTCAGGAAAAGAACCACGGATTCGATTATTACATATATTCAACGTAACCAAACAAGTAGAACAGCGAAACAGAGGCGAAACTTTCAAGGGCAAGGTTTGGCGCCTTTATTTGCTGCTTTTTGGAACCCCAGAAGCTGGCGATTGCGAAAGAATCGCAAAATCAACGCAGAGATTTGAAGTATTTTACGGAGTTAATGAAAACCCATCAAAGAATCAAGAACAGAGACATGAAGTTGAGATCCTTTAG

Coding sequence (CDS)

ATGGCAATTTTGAATCTCCGGAGGAAGAGGACCACTGAATCTATTGTGGTCCAAGTCAATAGCAGTAAGGTTCACCAGGTTACACAACTGGGTCGGAAAGCCACCGGTAAAGCGGTTAGCAACGAGACGAATCTGCGTCAACGGTTTGCAGTTCAAGATCCCGGTAGGTATGTTTCCATAAAGGTCATTCGACTCCAAGTTCAAGATGGAGAGGTTAGAACGATGACAGAGATGGGGAGATTCCCAAAAGAACGAGGCAACGAACCCGTGATATTGTTCGTATACGCAACTAACTCATACAACGATTTCAAGTTTCCCATCTCTTCAGGAAAAGAACCACGGATTCGATTATTACATATATTCAACGTAACCAAACAAGTAGAACAGCGAAACAGAGGCGAAACTTTCAAGGGCAAGGTTTGGCGCCTTTATTTGCTGCTTTTTGGAACCCCAGAAGCTGGCGATTGCGAAAGAATCGCAAAATCAACGCAGAGATTTGAAGTATTTTACGGAGTTAATGAAAACCCATCAAAGAATCAAGAACAGAGACATGAAGTTGAGATCCTTTAG

Protein sequence

MAILNLRRKRTTESIVVQVNSSKVHQVTQLGRKATGKAVSNETNLRQRFAVQDPGRYVSIKVIRLQVQDGEVRTMTEMGRFPKERGNEPVILFVYATNSYNDFKFPISSGKEPRIRLLHIFNVTKQVEQRNRGETFKGKVWRLYLLLFGTPEAGDCERIAKSTQRFEVFYGVNENPSKNQEQRHEVEIL
Homology
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BLAST of CmoCh17G001220 vs. ExPASy TrEMBL
Match: A0A2P2Q316 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 80  RFPKERGNEPVILFVYATNSYNDFKFPISSGKEPRIRLLHIFNVTKQ 127
           R PKE GN+P++L +YA NS  + +FP S GK P I LLH+F V ++
Sbjct: 28  RLPKESGNDPLMLLLYAINSEREERFPNSKGKGPDILLLHMFKVVRE 74

The following BLAST results are available for this feature:
BLAST of CmoCh17G001220 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G001220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2Q3161.3e-0451.06Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of CmoCh17G001220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G001220.1CmoCh17G001220.1mRNA