CmoCh16G010420 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G010420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger protein ZAT3-like
LocationCmo_Chr16: 7263304 .. 7265761 (+)
RNA-Seq ExpressionCmoCh16G010420
SyntenyCmoCh16G010420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACTTTTGAGGATGTTATTTATGCTACAATGACATACACAACCAATAACTCAATGGAGCAATCAACAAAGAGGAATCAAGTAAGTAAAATTTATGTCTTCTTGGCTCCAAACATAAATAAATAAATAAAATAATAGTGATTAGGATGATTATTGCTTATTTGTTTTGTGAAATTTTTTTTTTTTTTTTTTTGTTTACCATTTGATGTCTACTTGTTTCTACTCGATTCGATTTGGTTCGTAGTGTGTATATATATATAGTTGACGTATGAATCTGATACGTGTGGATTTACACGAACTAGACTGAAGAATAGGTATGAGATGACTTGCATTAAAGATCCACTCGTATAAGATTCGTGTATCAAATGGGTGACAGAGATGAGAACGGGGAAGCTTTCTTCATCCTCATTCTATTATCTTCAAGCTTCTCAAACAACACCATCGATTTGCCTAAACTTTTAGAGACTCCTTACAAGGTGTCGAGAACCTTAACTTCAAAACGCTTCTCGGAGAGAATTTGAGAACATTTTTACCATTTTTCATTTTGATTCATCTAACTTAAATTTTTATCGATATGAATTGGAATGAATACTTATAGCATAATCTGAATGTATGTTTCTCACCGAGATGGGGAGGGTGAAGTCTTTCCTGTCTATGTCGTTTATGTCATCTGTTTCAATCTCCATCCCTGCAAAATTCTTAAATTATTTTCGCAGGGCAAGAATTCTCCATCCCTACAAAATTCTTTACTTATTTTCGCAGGGCAAGAATTCACGTAGAATTTTTCAGTTTTTTATATGTATATTAAAAGTATTTCTTTCCAAAAAAAAATTTAATGGATAATTTTTATTTTTCAATATAATTTTTTATTAAAAAGTGAATTAATCAAATAATATTTTGTAAATTTTTTTCCAATGTTTATTTTGAAAACTATGATTGAACAAGACTACTATGTAAATATTTATTCTTATGTATATTTATGTGGAATTCTTTTCATTAATTGGATTTAGGGTATTTTGTTGCCAATGATGAGCATTTTCTTTATTTACTTTTGTTGGTAGGGCTAAATTTCAAGATTTTCATAATTGGGTCTTGTTATTTCTATGAATTTTGTATGATTGATTGAATTTTCTAATTTAGTTGTAAAGAGTTATTAATTGCAATATTGATTCAAATTTATAGAATGTAGCGACTCGACTTTGTAAACCTAGACTGACCAAAAGCAATATAATGTGAGATCCCATATCGATTAGGGAAGAGAATGAAACACTGTTTATAAAGGTGTGAAAACTTCTCCCTGTTTTAAAAACCTTGAGGGAAAGCTCAAAAGAGAAAGCACAAAGAGAACAATATCAGTTAGCGGTGTATTTGGGCTGTTACAAATGGTATCAGAATCAGACACCGGGCGATGTGCCAGCGAGGAGGCTGAGCCCTAAAGGGAGTGGATTTGGTGGGGATCCACGTTAATTGGAGAAGGAAATGAGTGCCCGCGAGGACGCTGGGACTCAAGGAGGGAGGGGGGTGGATTGTGAAATCCTACATTGATTGGGAGGAGAACGAAACACCATTTATAACGGTGTAGAAATCTCTCCCTAAGAGATGTGTTTTAAAAATCTTGAGGTGAAGCCCAAAACAATCAGATTCATAACTCATTACAAAGACAATTTTTGTTCACAAACATAAGTCCACCAGTAATTAACTTATGACACGACAATCGTCGCAGTTCTTTTTTCTTTACCGATCATTTGATTTTATACCTACAAAACATTTCATATATATACAAAACAAACCATGCATGCATATCAACTTAGGTTAAAGAACCCATTGAATTGAGCTAAACCAAACCGATCATTTGATATGTTTTATTTTTATAAATCTAACCTTTTTAATATTAATTTTTCATATACAATTTTCAATCCAAAATCATTGAATCACGTATTTGGAAAATCTAATTTTGTAGATGCATCAAGATAGTCAAAACCTAAGATTTGAAGATGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGCCATAGCTGCAATATTAGAAGAAAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGCTTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATCTCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAAACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGACAATTAA

mRNA sequence

ATGGGAACTTTTGAGGATGTTATTTATGCTACAATGACATACACAACCAATAACTCAATGGAGCAATCAACAAAGAGGAATCAAATGCATCAAGATAGTCAAAACCTAAGATTTGAAGATGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGCCATAGCTGCAATATTAGAAGAAAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGCTTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATCTCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAAACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGACAATTAA

Coding sequence (CDS)

ATGGGAACTTTTGAGGATGTTATTTATGCTACAATGACATACACAACCAATAACTCAATGGAGCAATCAACAAAGAGGAATCAAATGCATCAAGATAGTCAAAACCTAAGATTTGAAGATGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGCCATAGCTGCAATATTAGAAGAAAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGCTTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATCTCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAAACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGACAATTAA

Protein sequence

MGTFEDVIYATMTYTTNNSMEQSTKRNQMHQDSQNLRFEDGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRRKGFKSENSQTTNSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACWSWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
Homology
[Close]
BLAST of CmoCh16G010420 vs. ExPASy TrEMBL
Match: A0A6J1CQU4 (zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 38/95 (40.00%), Postives = 47/95 (49.47%), Query Frame = 0 

Query: 105 SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGR 164
           S+   KCG C ++F +MKALY HMR H +  W+       SS + A  S     WSVTGR
Sbjct: 16  SINSSKCGLCGKLFRTMKALYGHMRSHPDRTWRGMHPTPSSSSSSAAASTPLPTWSVTGR 75

Query: 165 RGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKK 191
           RGR RT            A T NS     ++ KKK
Sbjct: 76  RGRKRTSSAA--------ASTSNSNDEHDSSSKKK 102

[Close]
BLAST of CmoCh16G010420 vs. NCBI nr
Match: KAG6577553.1 (hypothetical protein SDJN03_25127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0 

Query: 29  MHQDSQNLRFEDGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRRKGFKSENSQTT 88
           MHQDSQNLRFE GPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRR+GFKSENSQTT
Sbjct: 1   MHQDSQNLRFEGGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRREGFKSENSQTT 60

Query: 89  NSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACW 148
           NSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACW
Sbjct: 61  NSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACW 120

Query: 149 SWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN 193
           SWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
Sbjct: 121 SWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN 164

[Close]
BLAST of CmoCh16G010420 vs. NCBI nr
Match: XP_022143488.1 (zinc finger protein ZAT3-like [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 38/95 (40.00%), Postives = 47/95 (49.47%), Query Frame = 0 

Query: 105 SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGR 164
           S+   KCG C ++F +MKALY HMR H +  W+       SS + A  S     WSVTGR
Sbjct: 16  SINSSKCGLCGKLFRTMKALYGHMRSHPDRTWRGMHPTPSSSSSSAAASTPLPTWSVTGR 75

Query: 165 RGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKK 191
           RGR RT            A T NS     ++ KKK
Sbjct: 76  RGRKRTSSAA--------ASTSNSNDEHDSSSKKK 102

The following BLAST results are available for this feature:
BLAST of CmoCh16G010420 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G010420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQU41.3e-0440.00zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=... [more]
BLAST of CmoCh16G010420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577553.11.9e-8298.78hypothetical protein SDJN03_25127, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022143488.12.7e-0440.00zinc finger protein ZAT3-like [Momordica charantia][more]
BLAST of CmoCh16G010420 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..65
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 111..131
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 109..131
score: 9.05759
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 110..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G010420.1CmoCh16G010420.1mRNA