CmoCh16G008930 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAGGTTGTGGAGACGGTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGAGGGACGACGACGACGGAGGTCAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGATGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAGGTTGTGGAGACGGTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGAGGGACGACGACGACGGAGGTCAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGATGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAGGTTGTGGAGACGGTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGAGGGACGACGACGACGGAGGTCAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGATGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDGASRGTTTTEVKIRMTKRELEKLLSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPELC Homology
BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A6J1EVV2 (uncharacterized protein LOC111438472 OS=Cucurbita moschata OX=3662 GN=LOC111438472 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A6J1J7P7 (uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 4.9e-43 Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 0
BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A6J1DBT0 (uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019048 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29 Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0
BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27 Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 0
BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27 Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 0
BLAST of CmoCh16G008930 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05 Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0
BLAST of CmoCh16G008930 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. ) HSP 1 Score: 44.3 bits (103), Expect = 6.8e-05 Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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