CmoCh16G008930 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G008930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDUF4228 domain protein
LocationCmo_Chr16: 5114350 .. 5114655 (-)
RNA-Seq ExpressionCmoCh16G008930
SyntenyCmoCh16G008930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAGGTTGTGGAGACGGTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGAGGGACGACGACGACGGAGGTCAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGATGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA

mRNA sequence

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAGGTTGTGGAGACGGTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGAGGGACGACGACGACGGAGGTCAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGATGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA

Coding sequence (CDS)

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATGCCGATGAGTGAGGAGGAGGAGGTTGTGGAGACGGTGAAGAGGAAGCTGAATGCCGATGACGGTGCTTCGAGAGGGACGACGACGACGGAGGTCAAGATTAGGATGACAAAGAGAGAGCTGGAGAAGTTATTGAGCAAAGTGGAAGTGGAGGAGCTGCCAGTGACGGAGCTGTTATTGCAGATGATTGAGGTTGGGGATGAGTCGGAGAGTACTCATCGGCGATCATGGCGACCATCTTTGCAAAGCATTCCTGAGCTGTGCTGA

Protein sequence

MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDGASRGTTTTEVKIRMTKRELEKLLSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPELC
Homology
BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A6J1EVV2 (uncharacterized protein LOC111438472 OS=Cucurbita moschata OX=3662 GN=LOC111438472 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDGASRGTTTTEVKIRMTKRELEKLLSK 60
           MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDGASRGTTTTEVKIRMTKRELEKLLSK
Sbjct: 1   MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDGASRGTTTTEVKIRMTKRELEKLLSK 60

Query: 61  VEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPELC 102
           VEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPELC
Sbjct: 61  VEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPELC 101

BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A6J1J7P7 (uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.9e-43
Identity = 97/106 (91.51%), Postives = 100/106 (94.34%), Query Frame = 0

Query: 1   MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADDGASRG-----TTTTEVKIRMTKRELE 60
           MGNCTSNKYLAETMPMSEEEE+VET+KRKLNADDGASR      TTTTEVKIRMTKRELE
Sbjct: 1   MGNCTSNKYLAETMPMSEEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRELE 60

Query: 61  KLLSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPELC 102
           KLLSKVEVEELPVTELLLQ+IEVGDESESTHRRSWRPSLQSIPELC
Sbjct: 61  KLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPELC 106

BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A6J1DBT0 (uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019048 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0

Query: 1   MGNCTSNKYLAETMPMSEEEEVVETVKRKLNADD---GASRGTT---TTEVKIRMTKREL 60
           MGNCTSNKY AE  PMS+EEE VETVKR+L  DD   GA R ++   TTEVKIR+TKREL
Sbjct: 1   MGNCTSNKYSAEISPMSDEEEAVETVKRRLIPDDDGHGALRSSSLARTTEVKIRITKREL 60

Query: 61  EKLLSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPEL 101
           EKLL KV+VEELPVTELL Q+I+VGD  ESTHRRSWRPSLQ+I EL
Sbjct: 61  EKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHEL 106

BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 0

Query: 1   MGNCTSNKYLAETMPMS-EEEEVVETVKRKLNADDGASR--GTTTTEVKIRMTKRELEKL 60
           MGNCTSNKYLAETMPMS +EEEV E ++R+L  +  A +   +TTTE+KIR+TK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPEL 101
           L KV++EELPV ELL ++I+VGD  ESTHRRSW+PSLQSIPE+
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEV 103

BLAST of CmoCh16G008930 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.8e-27
Identity = 70/103 (67.96%), Postives = 87/103 (84.47%), Query Frame = 0

Query: 1   MGNCTSNKYLAETMPMS-EEEEVVETVKRKLNADDGASR--GTTTTEVKIRMTKRELEKL 60
           MGNCTSNKYLAETMPMS +EEEV E ++R+L  +  A +   +TTTE+KIR+TK+ELEKL
Sbjct: 1   MGNCTSNKYLAETMPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKL 60

Query: 61  LSKVEVEELPVTELLLQMIEVGDESESTHRRSWRPSLQSIPEL 101
           L KV++EELPV ELL ++I+VGD  ESTHRRSW+PSLQSIPE+
Sbjct: 61  LCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEV 103

BLAST of CmoCh16G008930 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-05
Identity = 27/72 (37.50%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 36  ASRGTTTTEVKIRMTKRELEKLLSKVEVEELPVTELLLQMI-EVGDE------SESTHRR 95
           +S  +   E+KIR+TK+ELE L+  + ++ L   E+L ++I E GD+        + H +
Sbjct: 57  SSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQ 116

Query: 96  SWRPSLQSIPEL 101
            W+P LQSIPE+
Sbjct: 117 PWKPVLQSIPEM 128

BLAST of CmoCh16G008930 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 44.3 bits (103), Expect = 6.8e-05
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 44  EVKIRMTKRELEKLLSKVEVEELPVTELLLQ--MIEVGDESESTHRRSWRPSLQSIPEL 101
           E+KIR+TK++L  LLSKV V +L   +      ++      E+  +R WRP LQSIPE+
Sbjct: 56  EIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEV 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EVV21.2e-46100.00uncharacterized protein LOC111438472 OS=Cucurbita moschata OX=3662 GN=LOC1114384... [more]
A0A6J1J7P74.9e-4391.51uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315... [more]
A0A6J1DBT01.8e-2973.58uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5D3BTQ93.8e-2767.96DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
A0A1S3CJ773.8e-2767.96uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=... [more]
Match NameE-valueIdentityDescription
AT4G21920.11.4e-0537.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT3G20340.16.8e-0542.37Expression of the gene is downregulated in the presence of paraquat, an inducer ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..101
NoneNo IPR availablePANTHERPTHR33647:SF5OS01G0793900 PROTEINcoord: 1..99
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G008930.1CmoCh16G008930.1mRNA