CmoCh16G006580 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAACTGCTTATTCGGCGGTGGGTCTGGTGAGATTCAGGGGAAAATCAAGGTAATCACGTCCAATGGCGGGATTATGGAGTTGGGTTCTCCGATTACCGTCGGGTGCATCGCCGATGAGTTTCCTGGCTATGGAATATTCAAAAGCCAAGATCTTTTTTGGAACCCATTACCGCACAACGAGGAGCTGCTTCCGGGGAAATCCTACTACTTGCTTCAGAGAAACAGGGGAAGAAACAGAGGAGAGACAGAAGAAGGGGAAATGGGAATGATAAGGGCGCGTGAGGGGCACGTGAGGTCGAATAGTGTACCGGAGGCGACGGCGGCGGCGGCGGCGGGTATGGCGCCGTACAGAATGTCGTTTGATTATCAGGGGGTTTTGAGGAGGTCGCAGACGGAGGTTTTTTCGAGGAGCAGTGAGAAGAACGGCGGGGGGGTTTGGAAGGTGAAATTGGTGATTAGTCCGAAGCGATTGGTGGAGATTTTGGAGGAGGAAGGTCACACTCAGGAGTTGATTGAGAGCGTAAGGACTGTGGCTAAATGTGGAAGTACTAGCACCAGCAGCAGCTTTTCGTCGTCCATGGCGTTTTCCGATCACTGGAGTTTGTCCTCCACCACCGCCAATGCTACTCCGAGCGCTTCCTCCAAAAGTGGCGGCTTGCCGGAGATCTAA ATGGGGAACTGCTTATTCGGCGGTGGGTCTGGTGAGATTCAGGGGAAAATCAAGGTAATCACGTCCAATGGCGGGATTATGGAGTTGGGTTCTCCGATTACCGTCGGGTGCATCGCCGATGAGTTTCCTGGCTATGGAATATTCAAAAGCCAAGATCTTTTTTGGAACCCATTACCGCACAACGAGGAGCTGCTTCCGGGGAAATCCTACTACTTGCTTCAGAGAAACAGGGGAAGAAACAGAGGAGAGACAGAAGAAGGGGAAATGGGAATGATAAGGGCGCGTGAGGGGCACGTGAGGTCGAATAGTGTACCGGAGGCGACGGCGGCGGCGGCGGCGGGTATGGCGCCGTACAGAATGTCGTTTGATTATCAGGGGGTTTTGAGGAGGTCGCAGACGGAGGTTTTTTCGAGGAGCAGTGAGAAGAACGGCGGGGGGGTTTGGAAGGTGAAATTGGTGATTAGTCCGAAGCGATTGGTGGAGATTTTGGAGGAGGAAGGTCACACTCAGGAGTTGATTGAGAGCGTAAGGACTGTGGCTAAATGTGGAAGTACTAGCACCAGCAGCAGCTTTTCGTCGTCCATGGCGTTTTCCGATCACTGGAGTTTGTCCTCCACCACCGCCAATGCTACTCCGAGCGCTTCCTCCAAAAGTGGCGGCTTGCCGGAGATCTAA ATGGGGAACTGCTTATTCGGCGGTGGGTCTGGTGAGATTCAGGGGAAAATCAAGGTAATCACGTCCAATGGCGGGATTATGGAGTTGGGTTCTCCGATTACCGTCGGGTGCATCGCCGATGAGTTTCCTGGCTATGGAATATTCAAAAGCCAAGATCTTTTTTGGAACCCATTACCGCACAACGAGGAGCTGCTTCCGGGGAAATCCTACTACTTGCTTCAGAGAAACAGGGGAAGAAACAGAGGAGAGACAGAAGAAGGGGAAATGGGAATGATAAGGGCGCGTGAGGGGCACGTGAGGTCGAATAGTGTACCGGAGGCGACGGCGGCGGCGGCGGCGGGTATGGCGCCGTACAGAATGTCGTTTGATTATCAGGGGGTTTTGAGGAGGTCGCAGACGGAGGTTTTTTCGAGGAGCAGTGAGAAGAACGGCGGGGGGGTTTGGAAGGTGAAATTGGTGATTAGTCCGAAGCGATTGGTGGAGATTTTGGAGGAGGAAGGTCACACTCAGGAGTTGATTGAGAGCGTAAGGACTGTGGCTAAATGTGGAAGTACTAGCACCAGCAGCAGCTTTTCGTCGTCCATGGCGTTTTCCGATCACTGGAGTTTGTCCTCCACCACCGCCAATGCTACTCCGAGCGCTTCCTCCAAAAGTGGCGGCTTGCCGGAGATCTAA MGNCLFGGGSGEIQGKIKVITSNGGIMELGSPITVGCIADEFPGYGIFKSQDLFWNPLPHNEELLPGKSYYLLQRNRGRNRGETEEGEMGMIRAREGHVRSNSVPEATAAAAAGMAPYRMSFDYQGVLRRSQTEVFSRSSEKNGGGVWKVKLVISPKRLVEILEEEGHTQELIESVRTVAKCGSTSTSSSFSSSMAFSDHWSLSSTTANATPSASSKSGGLPEI Homology
BLAST of CmoCh16G006580 vs. ExPASy TrEMBL
Match: A0A6J1ETY6 (uncharacterized protein LOC111437546 OS=Cucurbita moschata OX=3662 GN=LOC111437546 PE=4 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 4.2e-119 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
BLAST of CmoCh16G006580 vs. ExPASy TrEMBL
Match: A0A6J1JCF7 (uncharacterized protein LOC111483212 OS=Cucurbita maxima OX=3661 GN=LOC111483212 PE=4 SV=1) HSP 1 Score: 414.1 bits (1063), Expect = 3.8e-112 Identity = 218/224 (97.32%), Postives = 219/224 (97.77%), Query Frame = 0
BLAST of CmoCh16G006580 vs. ExPASy TrEMBL
Match: A0A0A0KUU6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047890 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 4.2e-103 Identity = 204/224 (91.07%), Postives = 208/224 (92.86%), Query Frame = 0
BLAST of CmoCh16G006580 vs. ExPASy TrEMBL
Match: A0A5D3D1S5 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004760 PE=4 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 5.5e-103 Identity = 203/224 (90.62%), Postives = 208/224 (92.86%), Query Frame = 0
BLAST of CmoCh16G006580 vs. ExPASy TrEMBL
Match: A0A1S3BSZ8 (uncharacterized protein LOC103493172 OS=Cucumis melo OX=3656 GN=LOC103493172 PE=4 SV=1) HSP 1 Score: 383.6 bits (984), Expect = 5.5e-103 Identity = 203/224 (90.62%), Postives = 208/224 (92.86%), Query Frame = 0
BLAST of CmoCh16G006580 vs. TAIR 10
Match: AT1G64700.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 138.7 bits (348), Expect = 5.9e-33 Identity = 92/210 (43.81%), Postives = 122/210 (58.10%), Query Frame = 0
BLAST of CmoCh16G006580 vs. TAIR 10
Match: AT3G61920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 107.1 bits (266), Expect = 1.9e-23 Identity = 87/222 (39.19%), Postives = 110/222 (49.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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