CmoCh14G003110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	replication protein A 14 kDa subunit B-like
Location	Cmo_Chr14: 1434109 .. 1436073 (-)
RNA-Seq Expression	CmoCh14G003110
Synteny	CmoCh14G003110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGCCGCTCTCGAAAACCTGCGCTCTTTTTCCTCCGTCTCTCGCGGTTCGATTTCCATTTCCGACGAACTCCCCAGTTTCTGAATCAGGTAATGTTGCTCAGTGCTTTAGATTCTCCGATCGAGTGTTTTGAAAGATTCTTCCTCAGTTTGTTAGATTGAATTGCACAATAAAATTCTTCCGACCCTTTTACTTGTCTCGTCGTGTGTGTAACCTATGGAATATGGATTAGTTTGTTTGGCGTCAAATTATGACTAGATGTTTTCCAGTTTGAGTCGGCACGGTCGGATTCGATTCACTGATTATAGTGTGGCTTCCTGATTTGGTCCTTTAAGAAAGTGGAGAGTTAGAATTTGACAGTCGCGAAGCTAAAAGAAGGGCTACTGATTCAAAATAATCCGCCCACAGTGACTATCATGCATATTCTTACTGTTACAATAAATTTTGCTTTCAAACACATGGTTGCCCTAGCAGTAAAGAGTTTTAAGGAAATGGATCAAACCATAGTAGCCACGTGATTTAACTTTTTACGAGTTATCTTGACACAAACCAAATATAGTAGTATTGTGTGCTTGTCTTGTGGAATAGTCGAGTGCATATGCGACCAAATGCTAACAAATGGATTTTCATTGATATCTGATTAACATTTGTAATACGTAGCAAACAGTTTTGAGTATAAATGTCGAGTAATTGTTTGGATCTTCTCCCATTGGATTTTTGTAAGGAAGAAGGTATTTGTGAAATGCTGTCTTCTACCATATTTTTTAAACGCCAGCATTTTTTTTTTATTGATTTGGTGTTCATGCCAAACAGTTTCAAGCATTGCTCACATGGTGAAACAAGTCAGTTTTCTTTTTATTAAATGTTTCACTCTCTGAAAGACAACCTTCCTGGTGTTTTCTATAGATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAATTTTGGCGACTCATTTGGTATGCGCTCTTATTTAGCTCTCCTTATTCTAGAATGACACTGGAAGCTGTACAGTACTAATGCTCTATACATGTCTGAAGTTAATTTATGTTCTTTGAATTGGCTGAAGATGATCATTTAATTGTGTTTTCAGCTAATCATTGATATTGAGCAGTATTTAGTTTTGAATTGATGTTTTCCCAAGGAGCCTAGCCAAATCTGGCATTTTAGATTTCTGAAGCATAACCTGGCTAGATCATACTTATAGATTGGATAAGTTACTTATAGATTCCTCTTTGGATCATACTTTCAACATTCTTTGAGATTGGATGTGTTGTTGAATTTTTATCAACTTTTATCAGAAAGGGTTGCATTCTGAATTCTTTGTGTACCCCTGTTTGCAGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGATATTCAAGCCAGACATTCATTGGCCGGAAAGCTCAAACCCCTACCATCCCCTCCTGTGACACACTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTAGATTTATCGTTCATACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAAATCTATTTTAATCGATTTTGTTTTTAGCTTTTTAAGGTTATTATAAGGTTCTTAACTGCTAACTGAAACCCACAAACTGAAAATCCCTTCTGTTGTATCGACTGCATTGATCTGGGTAGAATTTTG

mRNA sequence

ATTTTGCCGCTCTCGAAAACCTGCGCTCTTTTTCCTCCGTCTCTCGCGGTTCGATTTCCATTTCCGACGAACTCCCCAGTTTCTGAATCAGATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGATATTCAAGCCAGACATTCATTGGCCGGAAAGCTCAAACCCCTACCATCCCCTCCTGTGACACACTAAGTCGCCGATGTTTTCTTCACGTTCTTCTGAAGCGCCCTAGATTTATCGTTCATACAGTATTGAACTTCTCAGGTAATGGATATATAAAATTTGAGTATGCACATGTATGTTTGGGTTAGAATATCTAGAATGAACATTGCTTCAAAATATTCATAAAAAATCTATTTTAATCGATTTTGTTTTTAGCTTTTTAAGGTTATTATAAGGTTCTTAACTGCTAACTGAAACCCACAAACTGAAAATCCCTTCTGTTGTATCGACTGCATTGATCTGGGTAGAATTTTG

Coding sequence (CDS)

ATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCCGAAGGCAACGGAGTCATATACGGTAAATCAACAGATGACAGCCAGATTACTGTGAAAGGATCCCCACCATTTTCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGACCAATTTTGGCGACTCATTTGATACATCTACCTTCAATCAACTTTGTCAGCTTGCTAACGGTGAGTTCAAACCCTTGTTTGTCTGA

Protein sequence

MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV

Homology

[Close]

BLAST of CmoCh14G003110 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-33
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGEF+ LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of CmoCh14G003110 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.5e-31
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of CmoCh14G003110 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 56/106 (52.83%), Postives = 83/106 (78.30%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD  Q+T+KG+    +S +
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+ K LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]

BLAST of CmoCh14G003110 vs. ExPASy TrEMBL
Match: A0A6J1F9M2 (replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111442076 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of CmoCh14G003110 vs. ExPASy TrEMBL
Match: A0A6J1J6J3 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111481797 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 104/106 (98.11%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDD+QITVKGSPPFSLSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of CmoCh14G003110 vs. ExPASy TrEMBL
Match: A0A6J1CTX6 (replication protein A 14 kDa subunit B OS=Momordica charantia OX=3673 GN=LOC111014253 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKF
Sbjct: 60  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKF 119

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLANGEFKPLF+
Sbjct: 120 VEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI 165

[Close]

BLAST of CmoCh14G003110 vs. ExPASy TrEMBL
Match: A0A6J1L034 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111498639 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGEFKPLF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]

BLAST of CmoCh14G003110 vs. ExPASy TrEMBL
Match: A0A6J1FQS1 (replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111447925 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 100/106 (94.34%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGEFKPLF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]

BLAST of CmoCh14G003110 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.5e-34
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKGSPPFSLSKF 60
           MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI VKGSP   L+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGEF+ LF+
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of CmoCh14G003110 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-32
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of CmoCh14G003110 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-32
Identity = 64/107 (59.81%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDSQITVKG-SPPFSLSK 60
           MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI V+G SPP  L+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 61  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 107
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANGEFK LF+
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:

BLAST of CmoCh14G003110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLG7	2.1e-33	63.21	Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ...	[more]
Q9LXK1	2.5e-31	59.81	Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ...	[more]
Q9SDK9	3.4e-28	52.83	Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of CmoCh14G003110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9M2	2.7e-52	100.00	replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1J6J3	1.0e-51	98.11	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1CTX6	1.5e-50	96.23	replication protein A 14 kDa subunit B OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1L034	1.3e-49	94.34	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FQS1	1.3e-49	94.34	replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CmoCh14G003110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18590.1	1.5e-34	63.21	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.1	1.8e-32	59.81	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.2	1.8e-32	59.81	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..106 e-value: 3.9E-21 score: 77.1
None	No IPR available	PANTHER	PTHR47058	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 1..106
None	No IPR available	CDD	cd04479	RPA3	coord: 6..105 e-value: 7.17558E-24 score: 85.3925
IPR013970	Replication factor A protein 3	PFAM	PF08661	Rep_fac-A_3	coord: 1..100 e-value: 8.2E-22 score: 77.5
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G003110.1	CmoCh14G003110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0031981	nuclear lumen
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding