CmoCh14G000260 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G000260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTPRXL protein
LocationCmo_Chr14: 137011 .. 137616 (-)
RNA-Seq ExpressionCmoCh14G000260
SyntenyCmoCh14G000260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGAAGGTCTCACACAAGAAAGATTCCAAGGGAATCTGTAGTCAAGATGGCGGAAGCTAGAAGACAGATAGCTCAAGCTTTGCAACTTCACAGATCGTCGATGGCCTCTTCGTTTTCGACGACGATGTCTATGGCGGAACCCATTGGCTGCCAAGGCCGTGACTTTGAGAAAAAGCTCATGTTTTCAGGTTCGCAGCATTTTTGCTATTCGATATTGGAGTCTATGCCAGTTCCTCAACCGACATGGTCGACCACTGCACCTTCTGTGCTGCGTTCGCCAGAGGCCCCGATGGAAGAGCAGGAAATTTTTGAGTGGGGAGATGGGCAAGCTTCTTACGCTTGGTGGCTTGGATTTTTGAAGGCTTTGGATGTTGATAGCAGCAACGACACAGAGTATCCAAATGCAGGGAATGGAAATGCGGTGGGGATGAGTTCGATGGTGTTGACTCAGTGTCAGGATGGCTTGGAAAGTGGAGAAGCACTGTTTCTTGAAGCGAGTGACAACACCTCGTTTACAGATGAATGGTTGATAATTCCTATTGGTGAAGATGGGGGATTCATTGACAACAACTGCCTTGGGAATGATTTGGCATCTAACTAA

mRNA sequence

ATGAAAAGAAGGTCTCACACAAGAAAGATTCCAAGGGAATCTGTAGTCAAGATGGCGGAAGCTAGAAGACAGATAGCTCAAGCTTTGCAACTTCACAGATCGTCGATGGCCTCTTCGTTTTCGACGACGATGTCTATGGCGGAACCCATTGGCTGCCAAGGCCGTGACTTTGAGAAAAAGCTCATGTTTTCAGGTTCGCAGCATTTTTGCTATTCGATATTGGAGTCTATGCCAGTTCCTCAACCGACATGGTCGACCACTGCACCTTCTGTGCTGCGTTCGCCAGAGGCCCCGATGGAAGAGCAGGAAATTTTTGAGTGGGGAGATGGGCAAGCTTCTTACGCTTGGTGGCTTGGATTTTTGAAGGCTTTGGATGTTGATAGCAGCAACGACACAGAGTATCCAAATGCAGGGAATGGAAATGCGGTGGGGATGAGTTCGATGGTGTTGACTCAGTGTCAGGATGGCTTGGAAAGTGGAGAAGCACTGTTTCTTGAAGCGAGTGACAACACCTCGTTTACAGATGAATGGTTGATAATTCCTATTGGTGAAGATGGGGGATTCATTGACAACAACTGCCTTGGGAATGATTTGGCATCTAACTAA

Coding sequence (CDS)

ATGAAAAGAAGGTCTCACACAAGAAAGATTCCAAGGGAATCTGTAGTCAAGATGGCGGAAGCTAGAAGACAGATAGCTCAAGCTTTGCAACTTCACAGATCGTCGATGGCCTCTTCGTTTTCGACGACGATGTCTATGGCGGAACCCATTGGCTGCCAAGGCCGTGACTTTGAGAAAAAGCTCATGTTTTCAGGTTCGCAGCATTTTTGCTATTCGATATTGGAGTCTATGCCAGTTCCTCAACCGACATGGTCGACCACTGCACCTTCTGTGCTGCGTTCGCCAGAGGCCCCGATGGAAGAGCAGGAAATTTTTGAGTGGGGAGATGGGCAAGCTTCTTACGCTTGGTGGCTTGGATTTTTGAAGGCTTTGGATGTTGATAGCAGCAACGACACAGAGTATCCAAATGCAGGGAATGGAAATGCGGTGGGGATGAGTTCGATGGTGTTGACTCAGTGTCAGGATGGCTTGGAAAGTGGAGAAGCACTGTTTCTTGAAGCGAGTGACAACACCTCGTTTACAGATGAATGGTTGATAATTCCTATTGGTGAAGATGGGGGATTCATTGACAACAACTGCCTTGGGAATGATTTGGCATCTAACTAA

Protein sequence

MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIPIGEDGGFIDNNCLGNDLASN
Homology
BLAST of CmoCh14G000260 vs. ExPASy TrEMBL
Match: A0A0A0L9R9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730740 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.3e-91
Identity = 169/200 (84.50%), Postives = 183/200 (91.50%), Query Frame = 0

Query: 2   KRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKL 61
           KRRSHTRK+P E+V+ MAEARRQIA+ALQLHRSS++SS STT SMAEP GC    FEKK 
Sbjct: 13  KRRSHTRKVPTEAVINMAEARRQIAEALQLHRSSLSSSSSTTTSMAEPSGCYVFQFEKKP 72

Query: 62  MFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFL 121
           + SGSQHFCYSI+ESMPVPQPTWSTT PSV+RSP APMEEQEIFEWGDGQASYAWWLGFL
Sbjct: 73  IVSGSQHFCYSIMESMPVPQPTWSTTEPSVVRSPVAPMEEQEIFEWGDGQASYAWWLGFL 132

Query: 122 KALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIP 181
           KALDV+ SNDTEY NAG+G+AVGMSSMVLT+CQDGLESGEALFLEASD+TS  DEWLIIP
Sbjct: 133 KALDVNISNDTEYENAGSGSAVGMSSMVLTRCQDGLESGEALFLEASDHTSLADEWLIIP 192

Query: 182 IGEDGGFIDNNCLGNDLASN 202
           IGEDGGFIDNNCLGNDLASN
Sbjct: 193 IGEDGGFIDNNCLGNDLASN 212

BLAST of CmoCh14G000260 vs. ExPASy TrEMBL
Match: A0A5A7TRK0 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005700 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.7e-85
Identity = 159/189 (84.13%), Postives = 172/189 (91.01%), Query Frame = 0

Query: 13  ESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLMFSGSQHFCYS 72
           E+V+ MAEARRQIA+ALQLHRSS++S+F TT SMAEP GC    FEKK + SGSQHFCYS
Sbjct: 2   EAVINMAEARRQIAEALQLHRSSLSSTFPTTTSMAEPSGCYVFQFEKKPIVSGSQHFCYS 61

Query: 73  ILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFLKALDVDSSNDT 132
           I+ESMPVPQPTWSTT PSV+RSP APMEEQEIFEWGDGQASYAWWLGFLKALDV+SSN+T
Sbjct: 62  IMESMPVPQPTWSTTEPSVVRSPVAPMEEQEIFEWGDGQASYAWWLGFLKALDVNSSNET 121

Query: 133 EYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIPIGEDGGFIDNN 192
           EY NA  G+AVGMSSMVLTQCQDGLESGEALFLEASD+TS  DEWLIIPIGEDGGFIDNN
Sbjct: 122 EYENARIGSAVGMSSMVLTQCQDGLESGEALFLEASDHTSLADEWLIIPIGEDGGFIDNN 181

Query: 193 CLGNDLASN 202
           CLGNDLASN
Sbjct: 182 CLGNDLASN 190

BLAST of CmoCh14G000260 vs. ExPASy TrEMBL
Match: A0A2N9GPB2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32169 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 88/200 (44.00%), Postives = 124/200 (62.00%), Query Frame = 0

Query: 3   RRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLM 62
           RR HTRK  ++ V+ M +ARR+IA ALQLHRSS +S+ +TT+         G +F    +
Sbjct: 2   RRRHTRKASQDCVINMVKARREIAHALQLHRSSSSSTTTTTL---------GNNFNYDFI 61

Query: 63  ---FSGSQHFCYSILES--MPVPQPTWSTTAPSVLRSPEAP----MEEQEIFEWGD-GQA 122
              F+G+Q +CYS++ES  MP+P+P WSTTAPS+L +P  P    ME  E FEWG+  QA
Sbjct: 62  RPSFAGTQ-YCYSLMESMTMPIPEPIWSTTAPSILAAPPPPPVPAMEALE-FEWGENNQA 121

Query: 123 SYAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTS 182
           S+ WWLGFL+ LD   + + +YP       +G S +V +  Q+  + GE  F++ SD + 
Sbjct: 122 SHTWWLGFLQTLDSKYNEEPKYP-------LGNSRIVFS--QEAPKLGEPPFVDESDQSG 181

Query: 183 FTDEWLIIPIGEDGGFIDNN 193
           F DEWLI P  ED G + N+
Sbjct: 182 FPDEWLIFPTTEDQGEVVNS 181

BLAST of CmoCh14G000260 vs. ExPASy TrEMBL
Match: A0A2N9G9P4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24097 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.3e-30
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 0

Query: 3   RRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLM 62
           RR HTRK  ++ V+ M +ARR+IA ALQLHRSS +S+ +TT          G +F    +
Sbjct: 2   RRRHTRKASQDCVINMVKARREIAHALQLHRSSSSSTTTTT--------TLGNNFNYDFI 61

Query: 63  ---FSGSQHFCYSILES--MPVPQPTWSTTAPSVLRSPEAP----MEEQEIFEWGD-GQA 122
              F+G+Q +CYS++ES  MP+P+P WSTTAPS+L +P  P    ME  E FEWG+  QA
Sbjct: 62  RPSFAGTQ-YCYSLMESMTMPIPEPIWSTTAPSILAAPPPPPVPAMEALE-FEWGENNQA 121

Query: 123 SYAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTS 182
           S+ WWLGFL+ LD   + + +YP       +G S +V +  Q+  + GE  F++ SD + 
Sbjct: 122 SHTWWLGFLQTLDSKYNEEPKYP-------LGNSRIVFS--QEAPKLGEPPFVDESDQSG 181

Query: 183 FTDEWLIIPIGEDGGFIDNN 193
           F DEWLI P  ED G + N+
Sbjct: 182 FPDEWLIFPTTEDQGEVVNS 182

BLAST of CmoCh14G000260 vs. ExPASy TrEMBL
Match: A5AGY2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032666 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.2e-30
Identity = 82/197 (41.62%), Postives = 125/197 (63.45%), Query Frame = 0

Query: 1   MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK 60
           ++RRS +R+  + S + +AEARR++A AL LHRSS +S +S + S +       +   +K
Sbjct: 16  IRRRSSSRRASQSSFINVAEARREVASALNLHRSS-SSPYSPSAS-SRRSSYNYKYGIRK 75

Query: 61  LMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPE----APMEEQEIFEWGDG-QASYA 120
              +G Q+ CYS+LE++P+P+PTWSTT P++  +P      P+ E   FEW +   ASYA
Sbjct: 76  ATVAGPQYCCYSLLETLPLPEPTWSTTPPAIFAAPSIVATPPLLEAIEFEWEESFTASYA 135

Query: 121 WWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTD 180
           WWLGFLK+LD  S+ +++YP     N V  +S +  Q QDG + GE+  L+A+D +S+ D
Sbjct: 136 WWLGFLKSLDGKSAEESKYP--FEENVVMRNSWLFGQRQDGPKQGESPCLDANDQSSYLD 195

Query: 181 EWLIIPIGEDGGFIDNN 193
           EWL+IP  ED   + N+
Sbjct: 196 EWLMIPPTEDVSEMKNH 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9R93.3e-9184.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730740 PE=4 SV=1[more]
A0A5A7TRK02.7e-8584.13TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005700... [more]
A0A2N9GPB21.1e-3044.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32169 PE=4 SV=1[more]
A0A2N9G9P43.3e-3044.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24097 PE=4 SV=1[more]
A5AGY27.2e-3041.62Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032666 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37256:SF3FORMIN-F-LIKEcoord: 1..186
NoneNo IPR availablePANTHERPTHR37256E1A-BINDING PROTEIN P400-LIKEcoord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G000260.1CmoCh14G000260.1mRNA