CmoCh13G006650 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G006650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LOL2
Location	Cmo_Chr13: 6979094 .. 6982416 (+)
RNA-Seq Expression	CmoCh13G006650
Synteny	CmoCh13G006650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGCTCCCAAAAGTGGGCCGAGAAAGGAATTGAGAAGTTGGTGCGCCAATGGTTCGCATCAGCGCGGGACGCCCAACGCCGTAGTGGTACACAAACAGTACTCCCATGCCATAGAAGAGCATGATCAGTTCATAGCCGACTGATCGAGAGAATGGAAATCCATGAAATCGAGAAGGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACCGCCGCCACAGCCACTTTCTTGTGAGTGCTTCCGAGTTTAATTTCAGATTTTGCGATGAGTATATTTCGTCTACAATTCAGTCCGGTATCCTTCTGATGCCTATTCGTTAGTCGGCCCGTCCTGAAATCGAAGGAATTATTTGTTTATATGGATTATAAGTTGTCGCCCCTCTCTCTCGAATGACTTTCTCCTACTCAAATTTAGTTCTCTTTGTTGCCTTTCAAAACTAATTGTGTTTGCGAATCTTCGTCTTGGTAATTTCATGTCTCTAGTTATTTCCCATCACTGGCTATTTATACATCTGATTGAGCTTCTGACGTGAGAGCGAGTCTCACGTTGGTTAATTTAGTGAAAGATCATGAGTTTATAAGTAAGGAATACTATCTCCATTGGTATGAGGTCTTTTGATGAAGCCCAAAGCAAAGCCATGAGAGATTATGCTCAAAGTAGACAATATCATACCATTGTGGAGAGTTGTGATTCCTATCACTTATAACGGTGAATAAGTTGTCCAAATATAGCACGAAAACTCCTTTTGGAATCAGTCCAATTCAATTCTTTGCAATGTGCTTTGTTAATCTATTGAAACAGTTGTAGTTCACCCCTAGTTTCAGTTCATGGAATCAACGTTAGCTCAACAAAAGCGCATAGAAATTAGAGCATTCTTGTTAGCATGTTTTATTGCAAGTCCCAAATATTGTCAATGTATGCATTTAAAAGCTTGTCAATGGAGACGTTTTGATCTGCAGCTGATATGGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGTTCTTGCTGTTCAACAGTCAACTATGTCCTAGAAGGTTCCTTCTCTTTTCCTTCAGTCTTTTTAGTTTTTACTATTATTTTCTTCCTTGAAAGTTGTCCTGTTCATATGCTGTTAGCTTTGTCCTAATCTTTAAGAAGAATCCCACCTATGTTGGTTTCGAAGTACCATTAGCACTTCCCGAACTTTATTCTCTTCAAATCTGTTTTCTTCCTACTGGGTCCTCTTTCATTAGAGGGTCAAGTTTTCGGCAGCATTTTTGAATATCTGTTTCTTGTAGTAGTGCTCGGTGGTGCCTGTATACCACATCTGAGCTATATGTAATATTTGAGGGAATTGGTTATAGTGATAAATGATTTGCATTATGTGATTGTGCCTGGGCCTCCAAGCATCTATCTTCTACGTAAAACCAAATGTTGTAGGATCTACGATATTTCTCAATTGGGTTATAGATGATTTATGTGAGATCCCACATCGGTTGGAGAGGAGAACGGAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAATCTTGAGGGGTAGCCCGAAAGAGAAAGCGCAAAGAGGACAATATCTGCTAGCGGTGAACTTGGACTGTTACACTGCTGATCAATTTTCTTTTCCTCGAATTGGGATCAGGGGATGTAACCAGAATGTATTGTAAAAAGTGAAATTCATGTTTAGAAGAAACATACTTAAGCAAAAATGATTTGCCAGTTCACGTCGTTCCTGAGCCCCAGATTTCGGAGGCAGTTCAAGTTGATCTAGTTTGTTGTTTTTTCATGATTCACTATTCAATATTAACTTAATAGATTCAGTCTTTCTAACGACTTTCTGTCAAAGTCTTATGATACCATTTTTCCTTATGTTAACGCCTGTACATTCTCTTTCTAGCGCACGAAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTATGTCAAGCCACTTTCTGACAAAGTTATTGCTTGGTATATGCTTACAGTCTTAATCTTTCTGGTTGTCTCATTTTTTCACTATGTTGAAGCATGATTTGCTGGAAACTAGATGTTTCTTTAATCATTGGGTGAGAAATTGATGCCCTTACTAAAATGAACACAGAGGCATAAAGCATGTATGTGGTGAAATTAATCCTTCGCATCAGTCCATGTGTTGGCAATTATATAACTGCTGTAATTTTCATTGCTAAGAAGCATGGAGCAGGAGTTATGTGAGATTCTACGTCGGTTGGAGAGAGAAATGAAACACTGTTTATAAAGGTGTGAAAATCTCTCTCTAATAGAAGCATTTTAAAATTGTGAGGCTGACGGCGATACGTAACGGGCCAAAGCAGACAACATCTGCTAACGGTGAGCTTGGACTATTACAAGTTATTCCTACCGTCTCTGGGATGGATGAAGTTATATTGCAATGTTGCAGTATGGATCAAAATATTTGCTTACCAAATTCATGCAGATTCACAGTAAGGGGCCAATTGGTCACTTTTTGAAAGTACAAAATCAAAATGGACATTTTAAAAGTACATGAACCAAATTGAACATTTTAAATATAGAACCGAATTGAACCAAAACTGACCAAAGTAGTATTTATATGTGTGTGGATATTTATTATGCTTTTGTTGCGAGTTCTTCATATTCTTTGGAAATAAGGGTGTTAGTTAGGGTAATTTGCACCGTTCCCTTGCTTTGATGTTCGATTACTTCATTAATTGTATGAATGAGAAATCATGCCCATAAATTTTAGCCTCTGACGGATTTAAGCGGCTGTGCAGGTGCATAACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAGAGTCTGTTCATGTATACTTCTGCGTAGGAAAAGATGTGACATTTTGTGAAGTTTTCTTTTCCGTTGCAGCCTTAATCAGCACACAGAGAAGGAGATCAACGTTATCATCACAGGCACTTTTATTTCTTTATTGAAAGAAACCTAGGAACTGACCTTCCCAACTTCTAACGTATTTTTATCTCAAGTTTGCCTTGTGACTTGACTTCCTGCTTATATTCATTTTCTATGCTGCAACCTTTGAGATGTTCTTCATTGTAAATGATTATCTTACTAAGTTGAAGCAGCATTGAGGACTAAATTTTTTCTAAATTCTACAATTTTGGATTTTCCTTAGCCG

mRNA sequence

TCGCTCCCAAAAGTGGGCCGAGAAAGGAATTGAGAAGTTGGTGCGCCAATGGTTCGCATCAGCGCGGGACGCCCAACGCCGTAGTGGTACACAAACAGTACTCCCATGCCATAGAAGAGCATGATCAGTTCATAGCCGACTGATCGAGAGAATGGAAATCCATGAAATCGAGAAGGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACCGCCGCCACAGCCACTTTCTTCTGATATGGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGTTCTTGCTGTTCAACAGTCAACTATGTCCTAGAAGCGCACGAAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAGAGTCTGTTCATGTATACTTCTGCGTAGGAAAAGATGTGACATTTTGTGAAGTTTTCTTTTCCGTTGCAGCCTTAATCAGCACACAGAGAAGGAGATCAACGTTATCATCACAGGCACTTTTATTTCTTTATTGAAAGAAACCTAGGAACTGACCTTCCCAACTTCTAACGTATTTTTATCTCAAGTTTGCCTTGTGACTTGACTTCCTGCTTATATTCATTTTCTATGCTGCAACCTTTGAGATGTTCTTCATTGTAAATGATTATCTTACTAAGTTGAAGCAGCATTGAGGACTAAATTTTTTCTAAATTCTACAATTTTGGATTTTCCTTAGCCG

Coding sequence (CDS)

ATGGAAATCCATGAAATCGAGAAGGACGAAGATGACGGACCTCCTCCTGGATGGGAACCCATCACCCCACCGTTGCCGCAACCGCCGCCACAGCCACTTTCTTCTGATATGGCCCAAATGGTTTGTGGTACCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCTAGATATGTTCAGTGTTCTTGCTGTTCAACAGTCAACTATGTCCTAGAAGCGCACGAAGTTGGACAAGTGAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACTTGTGTGACAGAAATTGGGGTGCATAACAGACGCCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACAAACTCTGTGCAGTAG

Protein sequence

MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQGQAAPPTNSVQ

Homology

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BLAST of CmoCh13G006650 vs. ExPASy Swiss-Prot
Match: O65426 (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-33
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLP--------QPPPQPLS-SDMAQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE    P P         P P  +   + AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPP 122
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC  VT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CmoCh13G006650 vs. ExPASy Swiss-Prot
Match: Q704V3 (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-28
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 24  PLPQPPPQP-LSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGS 83
           PL  PPP P L+ ++ QMVCG+CR LL Y +GA YV C+CC T+NYVLEAHEVG+V CG 
Sbjct: 54  PLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHCGH 113

Query: 84  CAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 121
           CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 114 CATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of CmoCh13G006650 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-20
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 28  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLL 87
           PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LL
Sbjct: 65  PPP---GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 124

Query: 88  MYPYGASSVRCSSCTCVTEIG 109
           MY YGA SV+C+ C  VT +G
Sbjct: 125 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CmoCh13G006650 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-20
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 30  PQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMY 89
           P P  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY
Sbjct: 96  PAP-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMY 155

Query: 90  PYGASSVRCSSCTCVTEIG 109
            YGA SV+C+ C  VT +G
Sbjct: 156 QYGARSVKCAVCNFVTSVG 173

[Close]

BLAST of CmoCh13G006650 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 29  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVK 88
           PP P   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ 
Sbjct: 40  PPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQIN 99

Query: 89  CGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ--GQAAPPTNS 130
           CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+ S
Sbjct: 100 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTS 151

[Close]

BLAST of CmoCh13G006650 vs. ExPASy TrEMBL
Match: A0A6J1EMN3 (protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.5e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmoCh13G006650 vs. ExPASy TrEMBL
Match: A0A6J1KRG9 (protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.1e-70
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQ PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmoCh13G006650 vs. ExPASy TrEMBL
Match: A0A0A0LXE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP PPP  LSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmoCh13G006650 vs. ExPASy TrEMBL
Match: A0A5A7UQS3 (Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G001680 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 119/131 (90.84%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           S CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmoCh13G006650 vs. ExPASy TrEMBL
Match: A0A1S3B6Q2 (protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62
Identity = 119/131 (90.84%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           S CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmoCh13G006650 vs. NCBI nr
Match: XP_022927005.1 (protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo subsp. pepo] >KAG6583998.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019620.1 Protein LOL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.7 bits (709), Expect = 5.1e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmoCh13G006650 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 274.6 bits (701), Expect = 4.3e-70
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MEIHEIEKDEDDGPPPGWEPITPPLPQ PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTNSVQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]

BLAST of CmoCh13G006650 vs. NCBI nr
Match: XP_004146601.1 (protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_013266 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 2.7e-64
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP PPP  LSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           SCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmoCh13G006650 vs. NCBI nr
Match: XP_011653178.1 (protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 6.7e-63
Identity = 121/132 (91.67%), Postives = 124/132 (93.94%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSS-DMAQMVCGTCRRLLKYLKGARYVQ 60
           M++HEIEKDEDDGPPPGWEPITP LP PPP  LSS DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQ 120
           CSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTNSVQ 132
           QGQAAPPTN VQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of CmoCh13G006650 vs. NCBI nr
Match: XP_008442544.1 (PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 4.3e-62
Identity = 119/131 (90.84%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQPPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           M++HEIEKDEDDGPPPGWEPITP LP PP   LS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ 120
           S CSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNSVQ 132
           GQAAPPTN VQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of CmoCh13G006650 vs. TAIR 10
Match: AT4G21610.1 (lsd one like 2 )

HSP 1 Score: 144.1 bits (362), Expect = 8.2e-35
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   EIEKDEDDGPPPGWEPITPPLP--------QPPPQPLS-SDMAQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE    P P         P P  +   + AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPP 122
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC  VT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CmoCh13G006650 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 28  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLL 87
           PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LL
Sbjct: 65  PPP---GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 124

Query: 88  MYPYGASSVRCSSCTCVTEIG 109
           MY YGA SV+C+ C  VT +G
Sbjct: 125 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CmoCh13G006650 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 28  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLL 87
           PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LL
Sbjct: 98  PPP---GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 157

Query: 88  MYPYGASSVRCSSCTCVTEIG 109
           MY YGA SV+C+ C  VT +G
Sbjct: 158 MYQYGARSVKCAVCNFVTSVG 175

[Close]

BLAST of CmoCh13G006650 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-21
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 28  PPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYVLEAHEVGQVKCGSCAVLL 87
           PPP    ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LL
Sbjct: 65  PPP---GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 124

Query: 88  MYPYGASSVRCSSCTCVTEIG 109
           MY YGA SV+C+ C  VT +G
Sbjct: 125 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CmoCh13G006650 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-21
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 29  PPQPLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNYV---------LEAHEVGQVK 88
           PP P   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ 
Sbjct: 40  PPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQIN 99

Query: 89  CGSCAVLLMYPYGASSVRCSSCTCVTEIGVHNRRPPWSVQQ--GQAAPPTNS 130
           CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A PP+ S
Sbjct: 100 CGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTS 151

The following BLAST results are available for this feature:

BLAST of CmoCh13G006650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65426	1.2e-33	56.35	Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1	[more]
Q704V3	3.3e-28	61.22	Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1	[more]
Q93ZB1	1.9e-20	56.79	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	9.5e-20	55.70	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
P94077	1.2e-19	43.75	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of CmoCh13G006650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMN3	2.5e-71	100.00	protein LOL2 OS=Cucurbita moschata OX=3662 GN=LOC111433966 PE=4 SV=1	[more]
A0A6J1KRG9	2.1e-70	99.24	protein LOL2 OS=Cucurbita maxima OX=3661 GN=LOC111495801 PE=4 SV=1	[more]
A0A0A0LXE3	1.3e-64	92.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1	[more]
A0A5A7UQS3	2.1e-62	90.84	Protein LOL2 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B6Q2	2.1e-62	90.84	protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1	[more]

BLAST of CmoCh13G006650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927005.1	5.1e-71	100.00	protein LOL2 [Cucurbita moschata] >XP_023519123.1 protein LOL2 [Cucurbita pepo s...	[more]
XP_023001758.1	4.3e-70	99.24	protein LOL2 [Cucurbita maxima]	[more]
XP_004146601.1	2.7e-64	92.37	protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_0...	[more]
XP_011653178.1	6.7e-63	91.67	protein LOL2 isoform X1 [Cucumis sativus]	[more]
XP_008442544.1	4.3e-62	90.84	PREDICTED: protein LOL2 isoform X4 [Cucumis melo] >KAA0056987.1 protein LOL2 iso...	[more]

BLAST of CmoCh13G006650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21610.1	8.2e-35	56.35	lsd one like 2	[more]
AT1G32540.2	1.4e-21	56.79	lsd one like 1	[more]
AT1G32540.1	1.4e-21	56.79	lsd one like 1	[more]
AT1G32540.3	1.4e-21	56.79	lsd one like 1	[more]
AT4G20380.2	8.8e-21	43.75	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 42..66 e-value: 3.4E-7 score: 30.0 coord: 80..102 e-value: 1.1E-9 score: 37.9
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 77..106 e-value: 2.7E-11 score: 40.9 coord: 39..69 e-value: 3.6E-13 score: 46.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR31747:SF17	PROTEIN LOL2	coord: 23..126
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 23..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G006650.1	CmoCh13G006650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005634	nucleus