CmoCh13G004810 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G004810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr13: 5814170 .. 5816280 (-)
RNA-Seq Expression	CmoCh13G004810
Synteny	CmoCh13G004810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGTTCAGGAGAGGAGAGTGTCCAGGCAGAGAGAGAGAGAGAGAGGACACGTGGCAGCGAGAGAGATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGTGTATTCGCGCCATACTTCCCCGCCGACCAGCCCCATAAGTTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGTTCCTTAACTCGATCACCTTTTTTTTTTTTTCTTTTACTCGAACCTCCGACCTCTAAATCGAGACCCAAATTGGGCTACCTCGAGGCGTGTGTGAACACGGGTTATAAACTATTCCGTCTTTTAAAGAGCATGTCAAAAGGTGAATTATGAAATTTGAATTTATATGTTTATATTATGAACACTGTAAGAACTTTAGAATATATAACTTTATTGGAAACATTATAATGAAAATGTTGACTAATTTAGGTTAGGTTATAATCAATTATTTTCAAAAGAATCTTTTTTTTTTTAATTAATTAATTAATTTTAAAGGAAATAAAATGGTTGATGGCTATTGTTATCAACTTTAACGGTTTAATGTTTCAGACCGTTAATAAATTAATTAAATATTGATGTGGAAAATATAAAAAGAAAATCTTTGAATTTAAGGAAAAAAAATATACATATTCAAACAACTCTTTGAAAAAAGAGATTTTATAGTTTCTATGTTGACCCAACAAATTCATTAAATTACAAAACTAGCCCAAATCTTACTTAAATGTGTAAACATGTCCTTAGGGATCATATGTTCCAAGAATCCGATCAATTCGGACTACCTAACTCAAACCATAAAATTGACTTGAGTTGAATGTTCGAAAAATGGAACAATTTTTGTGTCGGTTTATGGGTTGACTTTTTTTGGTTGGACAACCCGAAAATAGGGTTACAATTCATCCAAGAGTTGGGTTGAGCTAACCCAGAGTACCGACAACTCAATCCAACCTAACTCAGAGTTGGGTTGAGCTATGAACTTTGTTCGAGTTGCTCGGATCACCAATCTAAACAACCCCAAATTTCAGGTTGGTCCAAAAAATTTCTCCGACCCGACCTAACCCAATAATATGCCCGTTAAATAACACATAAAAAAAACATATATTTAAGCTAAAAAAGGAGGGAAATTATGTTTTTTTGTGGACTTTTTGGGTTAATTTTGGGACCCACCAATCCCATTTGCTTCTTTGGATGGAGACAACCATCAAATAAAGACCAAATTAGAAACCACCAAACCATCCTTTATTAACTAAATAACAAAAATATTGCACAGAAAAGTTTTAAAAAAAATTAATAAGAAGTTTCTATTATTAAAAAATAAGATAGTGGTCGAACTTTAGGTTAAAAAACTCCGCACCTAGCTCGGACAAAATCTCGACAAAACAAAGTTCAATCTAATATTTTCTTTTTGTCGGGAAGAAAGATTGACGTAGTAAATATTACAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGGGTGCGTGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGATTATAATAATATTATTTACCCAAAATCCCATTTACTTGGAGATTTAGTTAGTTTTTTTAAAATTTTTTTTTTTAATATTTTGTCAATTTGGCTTTCATTGGGTTGTTGGCCATTTGCTATCTTCTATACTACTTACTTACGACTTTCGTGTATGCCGACCAGAGCTCAGCTCAAGCAGTCAGGTAATATCTCCCTTTTCGGGACGTAGGAATGAACCTATTTATAATATTATACTTTAAGAAACTCGTATATAATATATTAT

mRNA sequence

GAGAGAGTTCAGGAGAGGAGAGTGTCCAGGCAGAGAGAGAGAGAGAGAGGACACGTGGCAGCGAGAGAGATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGTGTATTCGCGCCATACTTCCCCGCCGACCAGCCCCATAAGTTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGGGTGCGTGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGATTATAATAATATTATTTACCCAAAATCCCATTTACTTGGAGATTTAGTTAGTTTTTTTAAAATTTTTTTTTTTAATATTTTGTCAATTTGGCTTTCATTGGGTTGTTGGCCATTTGCTATCTTCTATACTACTTACTTACGACTTTCGTGTATGCCGACCAGAGCTCAGCTCAAGCAGTCAGGTAATATCTCCCTTTTCGGGACGTAGGAATGAACCTATTTATAATATTATACTTTAAGAAACTCGTATATAATATATTAT

Coding sequence (CDS)

ATGAAGACAGAGAATGGGCTGAGAAAACAAGGGGGCGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGGTGCGGCGAGGAATGTGTATTCGCGCCATACTTCCCCGCCGACCAGCCCCATAAGTTCGCCAATGTCCACAAGGTGTTCGGCGCCAGCAACGTCAACAAAATGCTCCAGGAGTTGCCACTTCACCAGCGGGGAGATGCAGTGAGCAGTTTAGTATATGAAGCGAACGCTAGGGTGCGTGACCCGGTCTATGGGTGTGTGGGAGCGATATCGTCTCTACAGCAGCAGATAGACAGCCTCCAAACTCAGCTGGCTCTGGCTCAAGCTGAGGTTGTGCACCTAAGGGTGCGACAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAGGTAACAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAATCCTCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAGTGTGGTGA

Protein sequence

MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW

Homology

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BLAST of CmoCh13G004810 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.5e-65
Identity = 123/167 (73.65%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQ  G A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQELP+
Sbjct: 6   RKQ--GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPI 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVRQ+ +
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMF-EMDMVVDQAMGDSVW 174
           F  +GL P SP +SGSPSS+ +  Q ++ MF  MD+V + ++G+S+W
Sbjct: 126 FPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

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BLAST of CmoCh13G004810 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 8.6e-45
Identity = 83/121 (68.60%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 11  GGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSN 130
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++   +  +
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQS 121

Query: 131 Y 132
           +
Sbjct: 122 H 122

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BLAST of CmoCh13G004810 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-39
Identity = 79/119 (66.39%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 7   LRKQG---GGGAAPCAACKLLRRRC-GEECVFAPYFPADQPHKFANVHKVFGASNVNKML 66
           +R++G   G   +PCA CKLLRR+C  + CVFAPYFPA +P+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 67  QELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLR 122
           QEL  + R DAV S+VYEANAR++DPVYGCVG ISSL +Q+++LQTQLA AQAE++H+R
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

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BLAST of CmoCh13G004810 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-37
Identity = 70/111 (63.06%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 128
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ +LQ +L   ++E++  + R+  +
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVA 155

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BLAST of CmoCh13G004810 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-37
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 126

Query: 136 TSPGNSGS 144
           ++ G  G+
Sbjct: 130 SAAGAPGN 126

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BLAST of CmoCh13G004810 vs. ExPASy TrEMBL
Match: A0A6J1KP63 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.4e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of CmoCh13G004810 vs. ExPASy TrEMBL
Match: A0A6J1EHY2 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111434249 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.4e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of CmoCh13G004810 vs. ExPASy TrEMBL
Match: A0A0A0LYG0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.0e-82
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ SR MFEMDMVVDQAM +S+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of CmoCh13G004810 vs. ExPASy TrEMBL
Match: A0A1S3CAK2 (LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.8e-81
Identity = 160/173 (92.49%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRL+GS  SR MFEMDMVVDQA+ DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSH-SRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of CmoCh13G004810 vs. ExPASy TrEMBL
Match: M5WJ97 (LOB domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G105700 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.5e-71
Identity = 142/173 (82.08%), Postives = 155/173 (89.60%), Query Frame = 0


Query: 4   ENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQ 63
           ENG RKQ  G  +PCAACKLLRRRC ++CVFAPYFPAD+P KFANVHKVFGASNVNKMLQ
Sbjct: 3   ENGSRKQ--GAPSPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQ 62

Query: 64  ELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVR 123
           ELP HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQTQLALAQAEVVHLRVR
Sbjct: 63  ELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLALAQAEVVHLRVR 122

Query: 124 QTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQ---AMGDSVW 174
           QTASFSN+GLSP SP NSGSPSS+ MGSQ SRP+F+MDM+VD     +G+S+W
Sbjct: 123 QTASFSNHGLSPASPSNSGSPSSKFMGSQ-SRPIFDMDMMVDHTSLGLGESMW 172

[Close]

BLAST of CmoCh13G004810 vs. NCBI nr
Match: XP_022927419.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB domain-containing protein 4-like [Cucurbita maxima] >XP_023520045.1 LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >KAG7019437.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.1 bits (889), Expect = 9.1e-92
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of CmoCh13G004810 vs. NCBI nr
Match: KAG6583812.1 (LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 345.9 bits (886), Expect = 2.0e-91
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDNLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of CmoCh13G004810 vs. NCBI nr
Match: XP_038895183.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ SRPMFEMDM VDQA+GDS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRPMFEMDMAVDQAIGDSMW 170

[Close]

BLAST of CmoCh13G004810 vs. NCBI nr
Match: XP_004145462.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical protein Csa_006984 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ SR MFEMDMVVDQAM +S+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-SRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of CmoCh13G004810 vs. NCBI nr
Match: XP_008459081.1 (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 1.6e-80
Identity = 160/173 (92.49%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 174
           RVRQTASFSNYGLSPTSP NSGSPSSRL+GS  SR MFEMDMVVDQA+ DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLVGSH-SRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of CmoCh13G004810 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 248.1 bits (632), Expect = 5.3e-66
Identity = 123/167 (73.65%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 8   RKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPL 67
           RKQ  G A+PCAACKLLRRRC ++CVF+PYFPAD+P KFANVH+VFGASNVNKMLQELP+
Sbjct: 6   RKQ--GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPI 65

Query: 68  HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 127
           HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQQQID LQ QLALAQAEVVHLRVRQ+ +
Sbjct: 66  HQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 125

Query: 128 FSNYGLSPTSPGNSGSPSSRLMGSQSSRPMF-EMDMVVDQAMGDSVW 174
           F  +GL P SP +SGSPSS+ +  Q ++ MF  MD+V + ++G+S+W
Sbjct: 126 FPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of CmoCh13G004810 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-46
Identity = 83/121 (68.60%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 11  GGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQR 70
           GG G++PCA+CKLLRRRC ++C+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR
Sbjct: 2   GGPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQR 61

Query: 71  GDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSN 130
            DAV+SLV+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++   +  +
Sbjct: 62  ADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQS 121

Query: 131 Y 132
           +
Sbjct: 122 H 122

[Close]

BLAST of CmoCh13G004810 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 164.1 bits (414), Expect = 1.0e-40
Identity = 79/119 (66.39%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 7   LRKQG---GGGAAPCAACKLLRRRC-GEECVFAPYFPADQPHKFANVHKVFGASNVNKML 66
           +R++G   G   +PCA CKLLRR+C  + CVFAPYFPA +P+KFA VHK+FGASNVNKML
Sbjct: 1   MRQKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKML 60

Query: 67  QELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLR 122
           QEL  + R DAV S+VYEANAR++DPVYGCVG ISSL +Q+++LQTQLA AQAE++H+R
Sbjct: 61  QELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of CmoCh13G004810 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-38
Identity = 70/111 (63.06%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 17  PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVSS 76
           PCAACKLLRRRC +EC F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 77  LVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTAS 128
           LVYEAN R+RDPVYGC+GAIS+LQQQ+ +LQ +L   ++E++  + R+  +
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVA 155

[Close]

BLAST of CmoCh13G004810 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-38
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 16  APCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPLHQRGDAVS 75
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 76  SLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHLRVRQTASFSNYGLSP 135
           SL YEA ARVRDPVYGCVGAIS LQ+Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 126

Query: 136 TSPGNSGS 144
           ++ G  G+
Sbjct: 130 SAAGAPGN 126

The following BLAST results are available for this feature:

BLAST of CmoCh13G004810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	7.5e-65	73.65	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	8.6e-45	68.60	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	1.4e-39	66.39	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8L5T5	2.3e-37	63.06	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9FML4	3.9e-37	60.16	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]

BLAST of CmoCh13G004810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP63	4.4e-92	100.00	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252...	[more]
A0A6J1EHY2	4.4e-92	100.00	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
A0A0A0LYG0	7.0e-82	93.64	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV...	[more]
A0A1S3CAK2	7.8e-81	92.49	LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=...	[more]
M5WJ97	2.5e-71	82.08	LOB domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G105700 PE=3 S...	[more]

BLAST of CmoCh13G004810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927419.1	9.1e-92	100.00	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB do...	[more]
KAG6583812.1	2.0e-91	99.42	LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038895183.1	1.5e-83	94.80	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004145462.1	1.4e-81	93.64	LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical prote...	[more]
XP_008459081.1	1.6e-80	92.49	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]

BLAST of CmoCh13G004810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	5.3e-66	73.65	LOB domain-containing protein 4	[more]
AT2G30130.1	6.1e-46	68.60	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	1.0e-40	66.39	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G40470.1	1.6e-38	63.06	LOB domain-containing protein 15	[more]
AT5G63090.2	2.8e-38	60.16	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..154
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 8..163
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 8..163
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 17..114 e-value: 2.0E-43 score: 147.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 16..117 score: 26.530319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004810.1	CmoCh13G004810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010087	phloem or xylem histogenesis
molecular_function	GO:0000976	transcription cis-regulatory region binding