CmoCh13G004060 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G004060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr13: 5147273 .. 5149907 (+)
RNA-Seq ExpressionCmoCh13G004060
SyntenyCmoCh13G004060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCAGAGGATGCACCATTGATAAGATTACTTACAATGGTCTGATAAAAGTATTTTGCAATGCTGGAAATGATGAAAAAGGATTGGAGTTATATGAACAAATGATAATGAATGGGCTTAGTGCTGATACTATATCGTGTAATATTCTGAACAACAGGGTCGGTAAAGTTGGAAAAGTGGACAACACATTTGAGTTTCTAAGACTTGATTAATCGAGGTTTTATGCCTGACATAGTCACTTATAACAGTGTTTTAAATGGACTTTGCAAGGTTGGATGTATCAAGAAAGCTTTTAAATGTATTTGATAAATTACAAGTTTAAGGTGTTTGCACCGTTTTTTTTACCTCTAACGCTTTTATCAGTTGGCACCGTAAAGAAGGCATGGTAAATGATGCTTGTTTATATCTATAGAGGTGTAGAGAATGATTCTGTACCTAGTAATGTGACTTGGAACGTGCTGGTCTATACTTCGGTAAAACAAAGTAACAATGAGAATTGTTTTTCCATGTCCAATGAGTTATGGTGATAAGACGTACTAGTGAAATAATTGTTCGTGTTAGATATTATTATGGTGGTAAAATGTACTAGTGAATTTGTTTTCTGAGACACTTCAGTTTCTTCTTGTGATTCACACGTTTGGCAGAAAGTTTAAGAATGCTAGTAATTTAGCGAATTGCTGGCACCCTTAGAAACAGAACCATAAGGCTAAGACAATTTTCACTTGATTAATTAAGTTTTATGCATATTTATGCCTCATTCAAATAGGCGTGACTTGGCTTGATTGGAGTTTCTTACTTCACTGTTTGCTCATGTATTGGTTCATTTCAGTATATTATGGTTTGATAAGCAAATTTCTCTGTCACTTGGTATGATAACTTTTGTTTACCTTCTTTTTTTAATGCAAGAAATAACTAAAACTTTTCATTAAGACAATGAAAATGTTAGAAAAGAAGGGAAAAAAAAAAAAGAAGATGTTGTACACAAAGCTCTTCTGGTTCACACAAAGATTAGATTTGCACCTAGAGCACCAATCATAATATATCTGCATGATCTAGAAGAGGATTTACGACATAGATTCTTTTATTGAGTTTCACCATAATAAAAAGAATAAAAGAAAAAAAAAAGAAAAAAAGAGAAAAAAGATCTTATTGATTACAAGATCTTCCCCCCTTTTAAAAAGATGACATCTGAGAACATAAGTTATGTGGGTGAGGCTATTAATTGGAAGAGCTGTTTGAATGGAAAGGGGGATTCGTTTCTCATATTTTTCCATCTAAAACAAGCATGTAGGGGAAAAAACTTTGATAATATGATTGTGTTTAGTTCTCTTCTTTGCGCACGGAATATGGGTCGATCTTATCATGCCTATTAATTCTTCATGAAAGCTCCTGAAAAAACTGACTTTATTCGGTTAATAACAATGCCACGTGAGTTGTGTAAATTAATATCTGAGATCTGGTTGAAAAGAGACTCCAATTGTCACATGTGACATGTGGCAACGGTAGCTACTCTTTTGATTTTTTTTTTGAGCTTTTGTGTATATGGCAATGTTTCACTTGAGCAAGTCATTCTTTGCCAATGTGATAATGTGATAATCCTTTGTTGTTCCGTCTCTCTGAAACCACTTTCCATGTTGATATTCATTATCAAGAGCCAGTTAGAGAGAGTGGCTTGCTTTAACTTAGAGAGAGCAGCTTGCTTCAACTTAGACAACAGAATATAGTTCAATTGATGATAATTATAAGTCTTGTTCTATCTATATTGGATGATATTTCTTATTTTTTGAGTTCATATTGTTTTAATGGATGATAAAATTGGGATGGTTGTCCATTGGCCGTGTGCAAAACATATCATCATTATTGAATTCGATCATGCTTGGCTAGTATCATCTTGTATATTTTGGTCTATTGGATGATTTGCAGTATATTTAATATCTTATTTCAAATTATTATGATGCAGTTACTCATCTGTCCTGGAAAATTGGATTATGGATACAACTGCTTAATAATAGCATATCATAATGTTGGTTATTGAGGCATTACTGTTTCTGTGTCGATATGTTTGTGTAAATGATTATTTTGACAATTAGCATCATCATCATCATTCTTATTATAACGCCTTTCATTATGTATTACTATTTGATATAAAAGTACAGAGTTGTAATTTGCTTCCATTAAAATGTTGCAACATTTTACTGTGCTTGCATACTGTCTTCTCACGGCATGTTCTTCTGAAAAAAATAGCATCATTCATCCCAATTATTTCCTCCGTAATGTTTTTAGAATTTTGGTTAATTATACTTTTTCTTACATAAATTTCTTTGTACATTTGTTTTCGTTCTTGGAATGGCCAGGCTGGGTTCAATATTGTGAAAGCTCCTGAATTCTTTACTTGATCTATTGAAGCTAACGCGGATTGGCACAAGATTACATTCTATTGCCCTTGTTTTTGCTTCTCTCTTCATCAGCTATTAGCTTCAGAACATAGGTACTCTCAGATTCTTTCCTTAATCCGTCAAGTGAGCACTCACAAAATCTCTCTGGCGTATTTTATGCCTTCTCTTCCTTCCAAGTTTCCTTTGTCTCACTATATTTTTTAATTCTATTTTTTTGATTGTGAATAGGCAATAG

mRNA sequence

ATGTTGTTCAGAGGATGCACCATTGATAAGATTACTTACAATGGTCTGATAAAAGTATTTTGCAATGCTGGAAATGATGAAAAAGGATTGGAGTTATATGAACAAATGATAATGAATGGGCTTAGTGCTGATACTATATCGTGTAATATTCTGAACAACAGGGTCGCTAACGCGGATTGGCACAAGATTACATTCTATTGCCCTTGTTTTTGCTTCTCTCTTCATCAGCTATTAGCTTCAGAACATAGGCAATAG

Coding sequence (CDS)

ATGTTGTTCAGAGGATGCACCATTGATAAGATTACTTACAATGGTCTGATAAAAGTATTTTGCAATGCTGGAAATGATGAAAAAGGATTGGAGTTATATGAACAAATGATAATGAATGGGCTTAGTGCTGATACTATATCGTGTAATATTCTGAACAACAGGGTCGCTAACGCGGATTGGCACAAGATTACATTCTATTGCCCTTGTTTTTGCTTCTCTCTTCATCAGCTATTAGCTTCAGAACATAGGCAATAG

Protein sequence

MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNNRVANADWHKITFYCPCFCFSLHQLLASEHRQ
Homology
[Close]
BLAST of CmoCh13G004060 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.0e-08
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           M+F+G  +D+ITYN LIK  C AG  +K   L+E+M+ +G +   ISCNIL N
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607

[Close]
BLAST of CmoCh13G004060 vs. ExPASy Swiss-Prot
Match: Q9SH60 (Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana OX=3702 GN=At1g64100 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 4   RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           RG   +  TYN LI  FC   N     +L+++MI +G+  DTI+CNIL
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNIL 508

[Close]
BLAST of CmoCh13G004060 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.2e-04
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           M+ + C  + +TYN LIK FC A   E+G+EL+ +M   GL  +T++ N L
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436

[Close]
BLAST of CmoCh13G004060 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-04
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           M+ + C  D +TYN LIK FC     E+G+E++ +M   GL  +T++ NIL
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437

[Close]
BLAST of CmoCh13G004060 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.1e-04
Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           M+ +GC  D +T+N LI  +C A   + GLEL+ +M + G+ A+T++ N L
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444

[Close]
BLAST of CmoCh13G004060 vs. ExPASy TrEMBL
Match: A0A5A7SWK3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00950 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNVEKGLELYEQMIMDGLGADTISCNIMIN 608

[Close]
BLAST of CmoCh13G004060 vs. ExPASy TrEMBL
Match: A0A1S3CJN8 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103501721 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNVEKGLELYEQMIMDGLGADTISCNIMIN 608

[Close]
BLAST of CmoCh13G004060 vs. ExPASy TrEMBL
Match: A0A6J1HNL7 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466303 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLF+GC +DKITYNGLIK FC AGN EKGLELYE+MIM+GLSADTISCNIL N
Sbjct: 557 MLFKGCILDKITYNGLIKAFCKAGNVEKGLELYEKMIMDGLSADTISCNILIN 609

[Close]
BLAST of CmoCh13G004060 vs. ExPASy TrEMBL
Match: A0A6J1EBE2 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432604 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGC +DKITYNGLIK FC AGN EKGLELYE+MIM+GL+ADTISCNIL N
Sbjct: 557 MLFRGCILDKITYNGLIKAFCKAGNVEKGLELYEKMIMDGLNADTISCNILIN 609

[Close]
BLAST of CmoCh13G004060 vs. ExPASy TrEMBL
Match: A0A6J1CMC3 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012598 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKI+YNGLIK FC  GN EKGL L+EQM M+GL  DTISCNIL N
Sbjct: 556 MLFRGCTLDKISYNGLIKAFCKVGNVEKGLGLFEQMTMDGLGTDTISCNILIN 608

[Close]
BLAST of CmoCh13G004060 vs. NCBI nr
Match: XP_038894135.1 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Benincasa hispida] >XP_038894137.1 pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC AGN EKGLELYEQMIM+GLS DTISCNIL N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKAGNVEKGLELYEQMIMDGLSVDTISCNILIN 608

[Close]
BLAST of CmoCh13G004060 vs. NCBI nr
Match: XP_031745945.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMIN 608

[Close]
BLAST of CmoCh13G004060 vs. NCBI nr
Match: XP_008463614.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNVEKGLELYEQMIMDGLGADTISCNIMIN 608

[Close]
BLAST of CmoCh13G004060 vs. NCBI nr
Match: KAA0035652.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK30891.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNVEKGLELYEQMIMDGLGADTISCNIMIN 608

[Close]
BLAST of CmoCh13G004060 vs. NCBI nr
Match: XP_004139614.1 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Cucumis sativus] >KAE8652865.1 hypothetical protein Csa_013028 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           MLFRGCT+DKITYNGLIK FC  GN EKGLELYEQMIM+GL ADTISCNI+ N
Sbjct: 556 MLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMIN 608

[Close]
BLAST of CmoCh13G004060 vs. TAIR 10
Match: AT5G64320.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-09
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNILNN 54
           M+F+G  +D+ITYN LIK  C AG  +K   L+E+M+ +G +   ISCNIL N
Sbjct: 555 MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607

[Close]
BLAST of CmoCh13G004060 vs. TAIR 10
Match: AT1G64100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 4   RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           RG   +  TYN LI  FC   N     +L+++MI +G+  DTI+CNIL
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNIL 508

[Close]
BLAST of CmoCh13G004060 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           M+ + C  + +TYN LIK FC A   E+G+EL+ +M   GL  +T++ N L
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436

[Close]
BLAST of CmoCh13G004060 vs. TAIR 10
Match: AT1G64100.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.8e-06
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 4   RGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           RG   +  TYN LI  FC   N     +L+++MI +G+  DTI+CNIL
Sbjct: 461 RGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNIL 508

[Close]
BLAST of CmoCh13G004060 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 1   MLFRGCTIDKITYNGLIKVFCNAGNDEKGLELYEQMIMNGLSADTISCNIL 52
           M+ + C  D +TYN LIK FC     E+G+E++ +M   GL  +T++ NIL
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437

The following BLAST results are available for this feature:
BLAST of CmoCh13G004060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FMF67.0e-0849.06Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
Q9SH601.2e-0443.75Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana OX... [more]
Q9LQ141.2e-0441.18Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop... [more]
Q9SXD11.6e-0441.18Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop... [more]
Q9LPX22.1e-0439.22Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh13G004060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWK36.5e-1783.02Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CJN86.5e-1783.02LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mito... [more]
A0A6J1HNL71.5e-1683.02pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Cucurbit... [more]
A0A6J1EBE21.5e-1683.02pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Cucurbit... [more]
A0A6J1CMC32.3e-1475.47pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Momordic... [more]
BLAST of CmoCh13G004060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038894135.12.7e-1786.79pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Benincasa ... [more]
XP_031745945.11.4e-1683.02LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g64320, mito... [more]
XP_008463614.11.4e-1683.02PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g... [more]
KAA0035652.11.4e-1683.02pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK30891... [more]
XP_004139614.11.4e-1683.02pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Cucumis sa... [more]
BLAST of CmoCh13G004060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G64320.15.0e-0949.06Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G64100.18.8e-0643.75pentatricopeptide (PPR) repeat-containing protein [more]
AT1G62930.18.8e-0641.18Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G64100.28.8e-0643.75pentatricopeptide (PPR) repeat-containing protein [more]
AT1G62670.11.1e-0541.18rna processing factor 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 4.5E-9
score: 33.9
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 4..36
e-value: 1.1E-7
score: 31.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 11.421732
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..64
e-value: 3.9E-11
score: 44.6
NoneNo IPR availablePANTHERPTHR45613PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 1..55
NoneNo IPR availablePANTHERPTHR45613:SF354OS10G0368902 PROTEINcoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G004060.1CmoCh13G004060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0016310 phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004797 thymidine kinase activity