CmoCh12G010950 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTTGCTCTCCCACAAACTTGGCTTCTTCCTCTACATTGTTGCCCATGGCTTGCTGCTATTGTCGTGCTCAGTACATGGCGATGGACCTAATGGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAGACACACACACAAACATATATGAGCTTCATAGTTCCTTGTCTTTGATGGTTCTTTCCTGTTGAGCTGTTTTACTGATAATTCCCCATTATCCATAGACATCATTTGTTATGGTTGAGGATTATTGGGAGTGAGTCCCACATTGGCTAATTTAGGGAATGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCGTACCAGTGTGGAGAGTCGTGATTCCTAACATGGTATCAGAGTCATGCCCTAAAACTTAGCTATGTTAATAGAATCCTCAAATATCGAACAAAGAATTGTGAGTCTCGAAGGTGTAGTCAAAAGTGACTAAAAGTGTCGAACAAAGGGTATACTTTGTTCGAGGGTTCCAGAGAAAGGAGTTAAGCCTCGATTAAGGGGAGACTGTTCGAGGGCTCCATAGGCCTTAGGGGAGGCTCTATAGTGTACTTTGTTCGAGTAGAGGATTGTTGGTTAATTTAGGGAATGATCATGGGTTTACGAGTAAGGTTCTCCATTGATATGAAGTCTTTTGGGAAGCCTAAAAGCAAAGCAACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATCGTGGAGAGTCGTGATTCCTAACACATAGCTCCTTGTCTTTGATGGTCTTTGATGGGTTCTTTCCTGTTGAACTGTTTTACTTGTAATTCCCCATTAGCCATAGACATCATTTGCTATATGCTATCTATCTCATAGAAACTCACACCTAAATCATCCATCATTTGCAGTGAAAGAAGACGTGCTTTTCCAAGCCATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAAATGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTGAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGGTGTTATCCGTGCTGTTGGGGTTGCTTCTTCTCTCGGGTTGAGGACCGTTTTCCTTTCCATCTCAAACGACATGTCGGTCGGGTTCTGGAAATTTCAAGCATCCTGCCACAATAATTACATTCTTTTTTTCTTTATTTTGTGTTCGTTTTTACAAGTGTTTTTCATCGAATTGTTATCTTAAATTCTTATCTTAAGGAGGAAAAAAAGAGTTTTTCTAAAGCCG ATGGCCTTGCTCTCCCACAAACTTGGCTTCTTCCTCTACATTGTTGCCCATGGCTTGCTGCTATTGTCGTGCTCAGTACATGGCGATGGACCTAATGTGAAAGAAGACGTGCTTTTCCAAGCCATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAAATGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTGAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGGTGTTATCCGTGCTGTTGGGGTTGCTTCTTCTCTCGGGTTGAGGACCGTTTTCCTTTCCATCTCAAACGACATGTCGGTCGGGTTCTGGAAATTTCAAGCATCCTGCCACAATAATTACATTCTTTTTTTCTTTATTTTGTGTTCGTTTTTACAAGTGTTTTTCATCGAATTGTTATCTTAAATTCTTATCTTAAGGAGGAAAAAAAGAGTTTTTCTAAAGCCG ATGGCCTTGCTCTCCCACAAACTTGGCTTCTTCCTCTACATTGTTGCCCATGGCTTGCTGCTATTGTCGTGCTCAGTACATGGCGATGGACCTAATGTGAAAGAAGACGTGCTTTTCCAAGCCATGAACAGCTATAGAAAGTCCATAAAACTTACCCCCATGAACAAGAACTCCAAAGCAGGCTGCCTAGTCAAGCAAATCGCTTGGGACTTCGACGACCAGTCGCCCCTCAGCATCTTCCTCAGCGGCTCCACCATTGCACCAAGCAACTTCTCCCAACTCCCTAGTCTACCCGACTACCTGTCCAAATGCAAAATCGAGCTCAATCACACAAAAAATGGCCTGATTTTGCCTCTCCATATCCCCACTTTGGCATTGAATCTTGTTCTCCATGAATGTACAAATTCCCAAATGGCTAAGTACTGGAGCAAACCTGAATTCACGTCGGTCGGAATTGGGTGTTTTGAACAATGGGTAGTGTTCGCTTTTGCCACCGATTCGCCTACCGGAAGCTTTTCTTCTGCCGTGAATTTGTCTGATTTGGGTCTTCGACATTTTTACTTGGTGTTATCCGTGCTGTTGGGGTTGCTTCTTCTCTCGGGTTGA MALLSHKLGFFLYIVAHGLLLLSCSVHGDGPNVKEDVLFQAMNSYRKSIKLTPMNKNSKAGCLVKQIAWDFDDQSPLSIFLSGSTIAPSNFSQLPSLPDYLSKCKIELNHTKNGLILPLHIPTLALNLVLHECTNSQMAKYWSKPEFTSVGIGCFEQWVVFAFATDSPTGSFSSAVNLSDLGLRHFYLVLSVLLGLLLLSG Homology
BLAST of CmoCh12G010950 vs. ExPASy Swiss-Prot
Match: P59833 (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 GN=At5g19250 PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21 Identity = 63/164 (38.41%), Postives = 88/164 (53.66%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy Swiss-Prot
Match: Q84MC0 (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 5.0e-20 Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy Swiss-Prot
Match: Q84VZ5 (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 GN=At5g19240 PE=2 SV=2) HSP 1 Score: 76.6 bits (187), Expect = 3.5e-13 Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy TrEMBL
Match: A0A6J1FI01 (uncharacterized GPI-anchored protein At5g19250-like OS=Cucurbita moschata OX=3662 GN=LOC111444310 PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 2.1e-109 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy TrEMBL
Match: A0A6J1HLK3 (uncharacterized GPI-anchored protein At5g19250-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111465647 PE=4 SV=1) HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102 Identity = 191/201 (95.02%), Postives = 193/201 (96.02%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy TrEMBL
Match: A0A6J1HMX6 (uncharacterized GPI-anchored protein At5g19250-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465647 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 7.9e-85 Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy TrEMBL
Match: A0A6J1HS73 (uncharacterized GPI-anchored protein At5g19250-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465647 PE=4 SV=1) HSP 1 Score: 323.2 bits (827), Expect = 7.9e-85 Identity = 161/169 (95.27%), Postives = 163/169 (96.45%), Query Frame = 0
BLAST of CmoCh12G010950 vs. ExPASy TrEMBL
Match: A6YTC6 (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 7.4e-75 Identity = 147/201 (73.13%), Postives = 164/201 (81.59%), Query Frame = 0
BLAST of CmoCh12G010950 vs. TAIR 10
Match: AT5G19250.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22 Identity = 63/164 (38.41%), Postives = 88/164 (53.66%), Query Frame = 0
BLAST of CmoCh12G010950 vs. TAIR 10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 101.7 bits (252), Expect = 7.2e-22 Identity = 59/170 (34.71%), Postives = 93/170 (54.71%), Query Frame = 0
BLAST of CmoCh12G010950 vs. TAIR 10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 99.4 bits (246), Expect = 3.6e-21 Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 0
BLAST of CmoCh12G010950 vs. TAIR 10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored ) HSP 1 Score: 76.6 bits (187), Expect = 2.5e-14 Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|