CmoCh12G007750 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G007750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 3
LocationCmo_Chr12: 6188100 .. 6188456 (+)
RNA-Seq ExpressionCmoCh12G007750
SyntenyCmoCh12G007750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTTTTCTAGTTTCTTTGATCCCACTCGGTCTTCATTTTCCATTTGCTTCTAATAGTTCAACCTATCTAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAAAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGTCACCTTTTCTTTTCCTTAGGCAGTACCTCTCAACAAGATTGATCTGTTTGGATCTTGGTCCATGATGGCCTTTTTATTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTTGGATCGGGAGTAA

mRNA sequence

ATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTTTTCTAGTTTCTTTGATCCCACTCGGTCTTCATTTTCCATTTGCTTCTAATAGTTCAACCTATCTAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAAAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGCAGTACCTCTCAACAAGATTGATCTGTTTGGATCTTGGTCCATGATGGCCTTTTTATTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTTGGATCGGGAGTAA

Coding sequence (CDS)

ATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTTTTCTAGTTTCTTTGATCCCACTCGGTCTTCATTTTCCATTTGCTTCTAATAGTTCAACCTATCTAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAAAAGTCGTTTCGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCTTGATCCGGAAGCAGTACCTCTCAACAAGATTGATCTGTTTGGATCTTGGTCCATGATGGCCTTTTTATTTATTTTGACGATTGGATTTCTCTATGAATGGAAAAGGGGTGCTTTGGATCGGGAGTAA

Protein sequence

MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRFYLVSILFIILDPEAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE
Homology
[Close]
BLAST of CmoCh12G007750 vs. ExPASy Swiss-Prot
Match: P27062 (NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng OX=4054 GN=ND3 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 9.1e-48
Identity = 99/118 (83.90%), Postives = 102/118 (86.44%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLG+ FPFASNSSTY +KLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISLLVSLIPLGVPFPFASNSSTYPDKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFII DPE       AVP NKID FGSWSMMAFL ILTIG LYEWKRGA DRE
Sbjct: 61  YLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy Swiss-Prot
Match: P60159 (NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus OX=4232 GN=ND3 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-44
Identity = 96/118 (81.36%), Postives = 98/118 (83.05%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           M EFAPICIYLVIS LVSLI LG+ F FASNSSTY EKLSAYECGFDP GDA+SRFDIRF
Sbjct: 1   MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRF 60

Query: 61  YLVSILFIILD-------PEAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFII D       P AV LNKIDLFG WSMMAFL ILTIGFLYEWKRGALD E
Sbjct: 61  YLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy Swiss-Prot
Match: Q36664 (NADH-ubiquinone oxidoreductase chain 3 OS=Pinus sylvestris OX=3349 GN=NAD3 PE=2 SV=2)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-44
Identity = 94/118 (79.66%), Postives = 97/118 (82.20%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LV LIPLG+ F FASN STY EKLSAYECGFDP GDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISLLVCLIPLGVPFLFASNGSTYPEKLSAYECGFDPFGDARSRFDIRF 60

Query: 61  YLVSILFIILD-------PEAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFII D       P AV LNKIDLFG WSMM FL ILTIGFLYEWK+GALD E
Sbjct: 61  YLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMVFLLILTIGFLYEWKKGALDWE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy Swiss-Prot
Match: P60160 (NADH-ubiquinone oxidoreductase chain 3 OS=Triticum aestivum OX=4565 GN=ND3 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-44
Identity = 96/118 (81.36%), Postives = 98/118 (83.05%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           M EFAPICIYLVIS LVSLI LG+ F FASNSSTY EKLSAYECGFDP GDA+SRFDIRF
Sbjct: 1   MLEFAPICIYLVISLLVSLILLGVPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRF 60

Query: 61  YLVSILFIILD-------PEAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFII D       P AV LNKIDLFG WSMMAFL ILTIGFLYEWKRGALD E
Sbjct: 61  YLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLLILTIGFLYEWKRGALDWE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy Swiss-Prot
Match: O99869 (NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum OX=4113 GN=ND3 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.7e-44
Identity = 96/118 (81.36%), Postives = 98/118 (83.05%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLGL F F+SNSSTY EK SAYECG DPSGDA+SR DIRF
Sbjct: 1   MSEFAPICIYLVISPLVSLIPLGLPFLFSSNSSTYPEKSSAYECGLDPSGDARSRVDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFII DPE       AVP NKID FGSWSMMAFL ILTIG LYEWKRGA DRE
Sbjct: 61  YLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy TrEMBL
Match: A0A7D5XZ34 (NADH-ubiquinone oxidoreductase chain 3 OS=Luffa acutangula OX=56866 GN=nad3 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLG+ FPFASNSSTY EKLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISPLVSLIPLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFIILDPE       AVPLNKIDLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 61  YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy TrEMBL
Match: G3EU38 (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo subsp. melo OX=412675 GN=nad3 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLGL FPFASNS+TY EKLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISPLVSLIPLGLPFPFASNSATYPEKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFIILDPE       AVPLNKIDLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 61  YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy TrEMBL
Match: G3EIY2 (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis sativus OX=3659 GN=nad3 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLGL FPF+SNSSTY EKLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISPLVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFIILDPE       AVPLNKIDLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 61  YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy TrEMBL
Match: A0A3Q9CSW0 (NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo var. momordica OX=2034244 GN=nad3 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLGL FPFASNS+TY EKLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISPLVSLIPLGLPFPFASNSATYPEKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFIILDPE       AVPLNKIDLFGSWSMMAFL ILTIGFLYEWKRGA DRE
Sbjct: 61  YLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. ExPASy TrEMBL
Match: A0A411GRU8 (NADH-ubiquinone oxidoreductase chain 3 OS=Morus notabilis OX=981085 GN=nad3 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.6e-47
Identity = 102/118 (86.44%), Postives = 104/118 (88.14%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPICIYLVIS LVSLIPLGL FPFASNSSTY +KLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPICIYLVISLLVSLIPLGLPFPFASNSSTYPDKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILDPE-------AVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILFIILDPE       AVPLNKID FGSWSMMAFL ILTIG LYEWKRGA DRE
Sbjct: 61  YLVSILFIILDPEVTFSFPWAVPLNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. TAIR 10
Match: AT2G07751.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-47
Identity = 98/118 (83.05%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPI IYLVIS LVSLI LG+ FPFASNSSTY EKLSAYECGFDPSGDA+SRFDIRF
Sbjct: 1   MSEFAPISIYLVISLLVSLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 60

Query: 61  YLVSILFIILD-------PEAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILF+I D       P AVP NKIDLFG WSMMAFLFILTIGFLYEWKRGA DRE
Sbjct: 61  YLVSILFLIPDLEVTFFFPWAVPPNKIDLFGFWSMMAFLFILTIGFLYEWKRGASDRE 118

[Close]
BLAST of CmoCh12G007750 vs. TAIR 10
Match: ATMG00990.1 (NADH dehydrogenase 3 )

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-47
Identity = 98/118 (83.05%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 1   MSEFAPICIYLVISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRF 60
           MSEFAPI IYLVIS LVSLI LG+ FPFASNSSTY EKLSAYECGFDPSGDA+SRFDIRF
Sbjct: 2   MSEFAPISIYLVISLLVSLILLGVPFPFASNSSTYPEKLSAYECGFDPSGDARSRFDIRF 61

Query: 61  YLVSILFIILD-------PEAVPLNKIDLFGSWSMMAFLFILTIGFLYEWKRGALDRE 112
           YLVSILF+I D       P AVP NKIDLFG WSMMAFLFILTIGFLYEWKRGA DRE
Sbjct: 62  YLVSILFLIPDLEVTFFFPWAVPPNKIDLFGFWSMMAFLFILTIGFLYEWKRGASDRE 119

[Close]
BLAST of CmoCh12G007750 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-10
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 12  VISFLVSLIPLGLHFPFASNSSTYLEKLSAYECGFDPSGDAKSRFDIRFYLVSILFIILD 71
           V++FL+S    G+  P         EKLS+YE G +P GDA  +F IR+Y+ +++F++ D
Sbjct: 22  VLAFLIS----GVLSPIRKGP----EKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFD 81

Query: 72  PEAVPL----NKIDLFG-SWSMMAFLF--ILTIGFLYEWKRGALD 110
            E V L       D+ G S  + AF+F  IL +G +Y W++GAL+
Sbjct: 82  VETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALE 118

The following BLAST results are available for this feature:
BLAST of CmoCh12G007750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P270629.1e-4883.90NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng OX=4054 GN=ND3 PE=3 SV=1[more]
P601591.6e-4481.36NADH-ubiquinone oxidoreductase chain 3 OS=Helianthus annuus OX=4232 GN=ND3 PE=2 ... [more]
Q366641.6e-4479.66NADH-ubiquinone oxidoreductase chain 3 OS=Pinus sylvestris OX=3349 GN=NAD3 PE=2 ... [more]
P601601.6e-4481.36NADH-ubiquinone oxidoreductase chain 3 OS=Triticum aestivum OX=4565 GN=ND3 PE=2 ... [more]
O998692.7e-4481.36NADH-ubiquinone oxidoreductase chain 3 OS=Solanum tuberosum OX=4113 GN=ND3 PE=3 ... [more]
BLAST of CmoCh12G007750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7D5XZ341.9e-4888.14NADH-ubiquinone oxidoreductase chain 3 OS=Luffa acutangula OX=56866 GN=nad3 PE=3... [more]
G3EU381.9e-4888.14NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo subsp. melo OX=412675 GN=... [more]
G3EIY21.9e-4888.14NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis sativus OX=3659 GN=nad3 PE=3 S... [more]
A0A3Q9CSW01.9e-4888.14NADH-ubiquinone oxidoreductase chain 3 OS=Cucumis melo var. momordica OX=2034244... [more]
A0A411GRU83.6e-4786.44NADH-ubiquinone oxidoreductase chain 3 OS=Morus notabilis OX=981085 GN=nad3 PE=3... [more]
BLAST of CmoCh12G007750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07751.11.6e-4783.05NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein [more]
ATMG00990.11.6e-4783.05NADH dehydrogenase 3 [more]
ATCG00440.13.5e-1038.10NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyGENE3D1.20.58.1610NADH:ubiquinone/plastoquinone oxidoreductase, chain 3coord: 1..109
e-value: 8.2E-30
score: 105.3
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PFAMPF00507Oxidored_q4coord: 30..109
e-value: 1.9E-23
score: 82.5
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PANTHERPTHR11058NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3coord: 1..111
NoneNo IPR availablePANTHERPTHR11058:SF19NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007750.1CmoCh12G007750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0070469 respirasome
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding