CmoCh12G007470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G007470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Cytochrome c oxidase subunit 1
Location	Cmo_Chr12: 5852972 .. 5854559 (+)
RNA-Seq Expression	CmoCh12G007470
Synteny	CmoCh12G007470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCTCCCCCTCCAGCGGGATCAGAAAAGGTTGTATTAAAGTTTCGATTGGTTAATAACATGGTAATAGCCCCTGCCAGTACCGGAAGTGATAATAAAAGTGGGAATGCTGTCACTAGAATGGACCAGACAAAGAGGGGTGATCTATGCATAGTCATTCCAGGTCCACGCATGTTGGAAATAGTCGTTATAAAATTGATAGAACCTAATATGGATGAAATACCAAATAGATGAAGACTAGAAATTGCTGAATCAACTGCTCCTCCAGAATGGCTGGTAATACCACTTAAGGGCAGATAGACCGTCCACCCAGTGTCGTTACCCACTTCTACTAAGGCTGAGCTTAATAGGAGCAAGAGACTTCATGGCAACAACTAGAATGAAATATTATTTAATCGAGGAAATGCCATGTCAGGTGCACCTATCAGAATCGAAACAGACCAATTACCAGATCCACCTATCATCGCCGGCATAACCATAAAAAAGATCATTAAAAAAGCTTGAGCCGTTATTAAAACATTATAAAGTTGATGATTCCACCAAGAATTTGATCGCCGGGTCGTGCTAATTCCATACGGATCAGTACTGAGAAGCATGTGCCCATCACTCCTGCAATGGCACCGAAGATGAAATATAGAGTCCCTATATCGTTGTGGTTAGTGGAGAACAGCCATCGAACCAGATTTCTCATCAAATTGAGATTCTTTCGTTTCCTTCCTTATCAGAGAGGGGCCCTTTACTGACTTTAGGGAGCGGCGGGGCTGATTTATTGAAAAAGTGGGAATGAGAGGGGAAGGAAGAATGGAAAGGGGGTGGGGAAAGTCCGGAAAGGCCTCACTTTATTGATGGGACATTTTGATGTCCTTTTCCTCTCACCCCGGTTCTGGTTCAAGAAAGGGTCAACACAAGGATCTGACTTCGAAGCAATCTCTGGAGTTTGACCTTATCCGAACGGGTCTTGCAAGACAAATAGGATTTCATCTTGAGCTCCAAATATACGCTATTGGGATAGGATGGCTCCTACTAGCTCTCCCCCCCGTAAGAACCGCACGTGCGAGTTACCCCGCATACGGCTCAAGTGGCGAAGGCCCTTTCCTTTGCGCTTGGTAAGCGCTTCGCTTTAGCCAAGCTTACTGCTAGCCTTATTCCGTCACCCGAGATCCAAGTCAGCACCGGAAAAGATCTCTTTCTTCCTCGATGCCGGGCCGGCTTGGAAGCAAGCTACCTGTCGCCTATCTCACCCCCTTTTTCTTATTAGTCAGATAGGTTGCCCTTTTCTCTAATAATCAGGTTTATGCCATCCTTCTTTTCTTTTAGGGTGAGTCTTAATAATAAGGGTGAGCCTTCGCTTTTTGGATTGTCTTCTGCCCAATGCAGTACCCTCCCGTTTTTTGGTTCCCATTGGGTTTACCTTGTTTACAGATCGACCTCATGGCAGCAAGAAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTCCCAAATCATATTCCGTGAATCGAAAGGGGAAGCTTACTCATCCATCAGCTCATTCACCTATCGGTGCAGTTTGA

mRNA sequence

ATGGGGTCTCCCCCTCCAGCGGGATCAGAAAAGGTTGTATTAAAGTTTCGATTGGTTAATAACATGGTAATAGCCCCTGCCAGTACCGGAAGTGATAATAAAAGTGGGAATGCTGTCACTAGAATGGACCAGACAAAGAGGGGTGATCTATGCATAGTCATTCCAGGTTTATGCCATCCTTCTTTTCTTTTAGGATCGACCTCATGGCAGCAAGAAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTCCCAAATCATATTCCGTGAATCGAAAGGGGAAGCTTACTCATCCATCAGCTCATTCACCTATCGGTGCAGTTTGA

Coding sequence (CDS)

ATGGGGTCTCCCCCTCCAGCGGGATCAGAAAAGGTTGTATTAAAGTTTCGATTGGTTAATAACATGGTAATAGCCCCTGCCAGTACCGGAAGTGATAATAAAAGTGGGAATGCTGTCACTAGAATGGACCAGACAAAGAGGGGTGATCTATGCATAGTCATTCCAGGTTTATGCCATCCTTCTTTTCTTTTAGGATCGACCTCATGGCAGCAAGAAAAAGGCGATCTTGTGCTATACTCCGGTGATCTCTTTCCTACCGAGGCACGCAAACTCCCATCGTGTCCCAAATCATATTCCGTGAATCGAAAGGGGAAGCTTACTCATCCATCAGCTCATTCACCTATCGGTGCAGTTTGA

Protein sequence

MGSPPPAGSEKVVLKFRLVNNMVIAPASTGSDNKSGNAVTRMDQTKRGDLCIVIPGLCHPSFLLGSTSWQQEKGDLVLYSGDLFPTEARKLPSCPKSYSVNRKGKLTHPSAHSPIGAV

Homology

[Close]

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL
Match: A0A2G2WLJ2 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_15265 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-20
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGSPPPAGSEKVVLKFRLVNNMVIAPASTGSDNKSGNAVTRMDQTKRGDLCIVIPG 57
          MGSPPPAGSEKVVLKFR VNNMVIAPASTGSDNKSGNAVTR D T RGDLCIVIPG
Sbjct: 1  MGSPPPAGSEKVVLKFRSVNNMVIAPASTGSDNKSGNAVTRTDHTNRGDLCIVIPG 56

[Close]

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL
Match: A0A251U8D1 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0236101 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-20
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGSPPPAGSEKVVLKFRLVNNMVIAPASTGSDNKSGNAVTRMDQTKRGDLCIVIPG 57
          MGSPPPAGSEKVVLKFR VNNMVIAPASTGSDNKSGNAVTR D T RGDLCIVIPG
Sbjct: 1  MGSPPPAGSEKVVLKFRSVNNMVIAPASTGSDNKSGNAVTRTDHTNRGDLCIVIPG 56

[Close]

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL
Match: A0A6A5LBR8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001714 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGSPPPAGSEKVVLKFRLVNNMVIAPASTGSDNKSGNAVTRMDQTKRGDLCIVIPG 57
          MGSPPPAGSEKVVLKFR VNN+VIAPASTGSDNKSGNAVT  D TKRGDLCIVIPG
Sbjct: 1  MGSPPPAGSEKVVLKFRSVNNIVIAPASTGSDNKSGNAVTGTDHTKRGDLCIVIPG 56

[Close]

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL
Match: A0A2K3NWF0 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g003851 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 66  STSWQQE-KGDLVLYSGDLFPTEARKLPSCPKSYSVNRKGKLTHPSA 112
           ST WQQE KGDLVLYSGDLFPTEARK PSCP+S+SVNRKGK THPSA
Sbjct: 177 STPWQQEKKGDLVLYSGDLFPTEARKPPSCPRSHSVNRKGKPTHPSA 223

[Close]

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL
Match: A0A6A5L804 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001821 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.1e-13
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 61  SFLLGSTSWQQE-KGDLVLYSGDLFPTEARKLPSCPKSYSVNRKGKLTHPSA 112
           S  + ST WQQE K DLVLYSGDLFPTEARK PSCP+S+SVNRKGK THPSA
Sbjct: 77  SLRIRSTPWQQEIKCDLVLYSGDLFPTEARKPPSCPRSHSVNRKGKPTHPSA 128

The following BLAST results are available for this feature:

BLAST of CmoCh12G007470 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2WLJ2	3.1e-20	92.86	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_15265 PE=4 SV=1	[more]
A0A251U8D1	3.1e-20	92.86	Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr08g0236101 PE...	[more]
A0A6A5LBR8	1.5e-19	91.07	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001714 PE=4 SV=1	[more]
A0A2K3NWF0	1.2e-13	87.23	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g003851 PE=4 SV=1	[more]
A0A6A5L804	8.1e-13	78.85	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00001821 PE=4 SV=1	[more]

BLAST of CmoCh12G007470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G007470.1	CmoCh12G007470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion