CmoCh12G007410 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G007410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
LocationCmo_Chr12: 5842195 .. 5842872 (-)
RNA-Seq ExpressionCmoCh12G007410
SyntenyCmoCh12G007410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACGGATGAGGGGAAAATCTCATGTACGGTTTTGTAATAGCGATGAGAACAGTGATGGTATTACCGACTATGGTTATAGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTATTTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGGTATCAAATTTAGTTGATTTTCTCTTGCTTGCTTCCTATCTAAATTAGTTTCTTCGTTATTTGTAACGGTTCTTTACTTCGGTGGGTGGGATATCTCCATCTTATGAATTGAAATAAATAAATAAAGCGTATTCAGGCAGTCTTTGGAATGACAATTAGTCTCTTTATTAGATTAGGCTAAAACTTCTTTCTTTTTGTTCATTTCTATAGCAAGAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAACTTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA

mRNA sequence

ATGGCCACGGATGAGGGGAAAATCTCATGTACGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTATTTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGCAAGAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAACTTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA

Coding sequence (CDS)

ATGGCCACGGATGAGGGGAAAATCTCATGTACGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTATTTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGCAAGAAGATGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAACTTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA

Protein sequence

MATDEGKISCTKSSSTVDIVEAQSREFLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESSFGKKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLLTKQTNNFLSTLFTVKEYYISRYYSDTIRNQLQGE
Homology
BLAST of CmoCh12G007410 vs. ExPASy Swiss-Prot
Match: A1XG10 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena OX=77108 GN=ndhA PE=3 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 8.8e-16
Identity = 61/131 (46.56%), Postives = 76/131 (58.02%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 184 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFIISSLAECERLPFDLPEAEEELVAGYQ 243

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLLTK-QTNNF----L 124
           TE S   FG       ++   +    TI Y  GW   +P   +  L  K QT+      +
Sbjct: 244 TEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNLSIPYIPITELFEKNQTSEVFGTTI 303

BLAST of CmoCh12G007410 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-15
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGFVI  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFVIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISL 100
           TE S   FG       ++   +    T+ Y  GW   +P  L
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWDISIPYIL 287

BLAST of CmoCh12G007410 vs. ExPASy Swiss-Prot
Match: Q0G9Q7 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota OX=4039 GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-15
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP 97
           TE S   FG       ++   +    T+ Y  GW   LP
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSLP 284

BLAST of CmoCh12G007410 vs. ExPASy Swiss-Prot
Match: Q8S8U5 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Atropa belladonna OX=33113 GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-15
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSR-EFLA----AIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+  FL       PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFLGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP 97
           TE S   FG       ++   +    T+ Y  GW   +P
Sbjct: 246 TEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNLSIP 284

BLAST of CmoCh12G007410 vs. ExPASy Swiss-Prot
Match: A0A390 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=13443 GN=ndhA PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.6e-15
Identity = 53/99 (53.54%), Postives = 62/99 (62.63%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP 97
           TE S   FG       ++   +    T+ Y  GW   +P
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLSIP 284

BLAST of CmoCh12G007410 vs. ExPASy TrEMBL
Match: A0A4Y5PTU8 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Azima tetracantha OX=43153 GN=ndhA PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.7e-15
Identity = 65/140 (46.43%), Postives = 80/140 (57.14%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+  L        PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGLWGWNLWRQPIGFIIFIISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLL-TKQTNNFLSTLF 130
           TE S   FG       ++   +    T+ Y  GW F +P   +  L   K+ N  L T F
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYIFIPGLFEIKKGNEILETTF 305

Query: 131 ----TVKEYYISRYYSDTIR 133
               T+ + Y+  + S T R
Sbjct: 306 DLFITLAKTYLLLFISITTR 325

BLAST of CmoCh12G007410 vs. ExPASy TrEMBL
Match: A0A220NI03 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Limnopoa meeboldii OX=2017773 GN=ndhA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 64/140 (45.71%), Postives = 79/140 (56.43%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+  L        PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 185 SNSSSTVDIVEAQSKYGLFGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ 244

Query: 71  TESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-ISLLNPL-LTKQTNNF---L 130
           TE S            ++   +    TI Y  GW F +P ISL     + K    F   +
Sbjct: 245 TEYSGIKYGLFYLASYLNLLVSSLFVTILYLGGWNFSIPYISLFGFFQMNKMVGIFEIIM 304

Query: 131 STLFTVKEYYISRYYSDTIR 133
             L T+ + Y+  + S TIR
Sbjct: 305 GILITLTKAYLFLFISITIR 324

BLAST of CmoCh12G007410 vs. ExPASy TrEMBL
Match: A0A2S1U680 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Leuconotis anceps OX=2066941 GN=ndhA PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 62/139 (44.60%), Postives = 78/139 (56.12%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPL----LTKQTNNFLS 130
           TE S   FG       ++   +    TI Y  GW F +P   +  +    +TK     +S
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNFSIPYIFVPKIFDINITKVGKTIIS 305

Query: 131 TLFTVKEYYISRYYSDTIR 133
              T+ + Y+  + S   R
Sbjct: 306 IFITLAKTYLFLFISIATR 324

BLAST of CmoCh12G007410 vs. ExPASy TrEMBL
Match: A0A0K0LT06 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sedum oryzifolium OX=91144 GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 63/138 (45.65%), Postives = 77/138 (55.80%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLLTKQTNNF---LST 130
           TE S   FG       ++   +     I Y  GW F +P  L   L  K    F   +S 
Sbjct: 246 TEYSGIKFGLFFVASYLNLLVSSFFVIILYLGGWNFSIPYILSPELFEKAGGGFGTIISI 305

Query: 131 LFTVKEYYISRYYSDTIR 133
           L T+ + Y+  +   T R
Sbjct: 306 LITLVKTYLFLFIPITTR 323

BLAST of CmoCh12G007410 vs. ExPASy TrEMBL
Match: A0A1W6CAZ0 (NADH-quinone oxidoreductase subunit H OS=Aloysia citrodora OX=925377 GN=ndhA PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 63/140 (45.00%), Postives = 83/140 (59.29%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQ
Sbjct: 186 SNSSSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPISLLNPL--LTKQTNNFLSTL 130
           TE S   FG       ++   +    T+ Y  GW F +P   +  L  +TK++  F +T+
Sbjct: 246 TEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNFSIPYISVPELFDITKRSQVFGTTI 305

Query: 131 ---FTVKEYYISRYYSDTIR 133
               T+ + Y+  + S T R
Sbjct: 306 GIFITLAKTYLFLFISITTR 325

BLAST of CmoCh12G007410 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 54/104 (51.92%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 11  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQ 70
           + S STVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEEL+AGYQ
Sbjct: 186 SNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQ 245

Query: 71  TESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP-ISLL 101
           TE S   FG       ++   +    T+ Y  GW   +P IS+L
Sbjct: 246 TEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNISIPYISIL 289

BLAST of CmoCh12G007410 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-06
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 10  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE 69
           C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E
Sbjct: 161 CVGPRNSSEIVMAQ-KQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVE 220

Query: 70  -SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISLLNPL 104
            SS G  + F              T+ +P GW  +L + +   +
Sbjct: 221 YSSMGSALFFLGEYANMILMSGPCTLFFPGGWPPILDLPIFKKI 263

BLAST of CmoCh12G007410 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-06
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 10  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE 69
           C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E
Sbjct: 161 CVGPRNSSEIVMAQ-KQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVE 220

Query: 70  -SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISLLNPL 104
            SS G  + F              T+ +P GW  +L + +   +
Sbjct: 221 YSSMGSALFFLGEYANMILMSGPCTLFFPGGWPPILDLPIFKKI 263

BLAST of CmoCh12G007410 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-06
Identity = 36/104 (34.62%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 10  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE 69
           C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E
Sbjct: 161 CVGPRNSSEIVMAQ-KQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVE 220

Query: 70  -SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISLLNPL 104
            SS G  + F              T+ +P GW  +L + +   +
Sbjct: 221 YSSMGSALFFLGEYANMILMSGPCTLFFPGGWPPILDLPIFKKI 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A1XG108.8e-1646.56NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nuphar advena OX=7710... [more]
Q2QD362.0e-1553.92NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36... [more]
Q0G9Q72.0e-1553.54NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota OX=4039... [more]
Q8S8U52.6e-1553.54NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Atropa belladonna OX=... [more]
A0A3902.6e-1553.54NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=134... [more]
Match NameE-valueIdentityDescription
A0A4Y5PTU87.7e-1546.43NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Azima tetracantha OX=... [more]
A0A220NI032.9e-1445.71NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Limnopoa meeboldii OX... [more]
A0A2S1U6802.9e-1444.60NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Leuconotis anceps OX=... [more]
A0A0K0LT063.8e-1445.65NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sedum oryzifolium OX=... [more]
A0A1W6CAZ03.8e-1445.00NADH-quinone oxidoreductase subunit H OS=Aloysia citrodora OX=925377 GN=ndhA PE=... [more]
Match NameE-valueIdentityDescription
ATCG01100.11.2e-1551.92NADH dehydrogenase family protein [more]
ATMG01120.14.9e-0634.62NADH dehydrogenase 1B [more]
ATMG00516.14.9e-0634.62NADH dehydrogenase 1C [more]
ATMG01275.14.9e-0634.62NADH dehydrogenase 1A [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPFAMPF00146NADHdhcoord: 10..69
e-value: 3.5E-16
score: 59.4
IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HPANTHERPTHR11432NADH DEHYDROGENASE SUBUNIT 1coord: 12..70
NoneNo IPR availablePANTHERPTHR11432:SF3NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1coord: 12..70
IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved sitePROSITEPS00668COMPLEX1_ND1_2coord: 50..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007410.1CmoCh12G007410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular anatomical structure
cellular_component GO:0016020 membrane